Wall clock time and date at job start Tue Mar 31 2020 15:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46876 * 2 1 4 4 N 1.46499 * 109.47158 * 119.99497 * 2 1 3 5 5 N 1.39839 * 125.39333 * 299.96015 * 4 2 1 6 6 C 1.30229 * 110.09251 * 180.02562 * 5 4 2 7 7 C 1.45854 * 107.65914 * 359.97438 * 6 5 4 8 8 C 1.40000 * 134.25439 * 180.30073 * 7 6 5 9 9 C 1.37017 * 118.15179 * 180.19340 * 8 7 6 10 10 C 1.50699 * 120.17806 * 179.74372 * 9 8 7 11 11 N 1.46900 * 109.47353 * 269.73362 * 10 9 8 12 12 C 1.47448 * 111.00041 * 69.15552 * 11 10 9 13 13 C 1.54321 * 107.23159 * 123.26094 * 12 11 10 14 14 C 1.55422 * 103.04810 * 22.28093 * 13 12 11 15 15 O 1.42906 * 111.00250 * 82.39224 * 14 13 12 16 16 C 1.50702 * 111.10698 * 206.29460 * 14 13 12 17 17 H 1.08002 * 119.99583 * 112.17314 * 16 14 13 18 18 C 1.37874 * 120.00111 * 292.17739 * 16 14 13 19 19 N 1.31511 * 119.99903 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99891 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47036 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46987 * 119.99992 * 20 18 16 23 23 H 1.48503 * 109.46798 * 239.99732 * 20 18 16 24 24 C 1.47846 * 111.00020 * 189.99682 * 11 10 9 25 25 C 1.38803 * 119.64815 * 359.47910 * 9 8 7 26 26 N 1.31515 * 121.58767 * 0.27026 * 25 9 8 27 27 C 1.32756 * 121.47045 * 0.02562 * 26 25 9 28 28 H 1.09006 * 109.47114 * 300.00327 * 1 2 3 29 29 H 1.09000 * 109.47136 * 60.00104 * 1 2 3 30 30 H 1.08999 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47442 * 240.00193 * 2 1 3 32 32 H 1.09000 * 109.47153 * 299.99886 * 3 2 1 33 33 H 1.08996 * 109.47448 * 59.99855 * 3 2 1 34 34 H 1.09003 * 109.46730 * 179.97438 * 3 2 1 35 35 H 1.08006 * 126.16937 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.92577 * 359.97129 * 8 7 6 37 37 H 1.09001 * 109.47333 * 149.72861 * 10 9 8 38 38 H 1.09001 * 109.46990 * 29.72981 * 10 9 8 39 39 H 1.08999 * 109.88737 * 242.66366 * 12 11 10 40 40 H 1.09000 * 109.88899 * 3.85249 * 12 11 10 41 41 H 1.09004 * 110.70290 * 140.66846 * 13 12 11 42 42 H 1.09005 * 110.69934 * 263.71964 * 13 12 11 43 43 H 0.96696 * 113.99639 * 67.88556 * 15 14 13 44 44 H 0.97006 * 120.00009 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.37464 * 332.46590 * 24 11 10 46 46 H 1.08999 * 110.37318 * 94.69366 * 24 11 10 47 47 H 1.07993 * 119.20533 * 180.29049 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7516 -0.3118 2.5156 6 6 2.3326 -1.1328 3.3429 7 6 3.0385 -2.1334 2.5506 8 6 3.8221 -3.2511 2.8618 9 6 4.3449 -3.9822 1.8277 10 6 5.1996 -5.1907 2.1106 11 7 6.6082 -4.7839 2.2014 12 6 6.8477 -3.9752 3.4109 13 6 7.9570 -4.6800 4.2198 14 6 8.6812 -5.5399 3.1467 15 8 9.6304 -4.7579 2.4188 16 6 9.3411 -6.7429 3.7701 17 1 8.9699 -7.7341 3.5554 18 6 10.4184 -6.5780 4.6146 19 7 10.8705 -5.3710 4.8756 20 14 11.2358 -8.0691 5.3878 21 1 10.5425 -9.3027 4.9376 22 1 12.6610 -8.1226 4.9739 23 1 11.1534 -7.9673 6.8670 24 6 7.4989 -5.9632 2.2397 25 6 4.0785 -3.6072 0.5181 26 7 3.3363 -2.5578 0.2395 27 6 2.8079 -1.8081 1.1992 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 2.2972 -1.0823 4.4212 36 1 4.0122 -3.5272 3.8885 37 1 5.0820 -5.9156 1.3050 38 1 4.8902 -5.6419 3.0534 39 1 7.1735 -2.9740 3.1290 40 1 5.9355 -3.9172 4.0048 41 1 8.6402 -3.9500 4.6540 42 1 7.5254 -5.3114 4.9965 43 1 10.3886 -4.4697 2.9451 44 1 11.6287 -5.2550 5.4695 45 1 6.9779 -6.8185 2.6700 46 1 7.8558 -6.2020 1.2379 47 1 4.4903 -4.1914 -0.2915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:13 Heat of formation + Delta-G solvation = 56.003883 kcal Electronic energy + Delta-G solvation = -28105.328186 eV Core-core repulsion = 24289.477676 eV Total energy + Delta-G solvation = -3815.850510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61763 -38.96749 -37.87035 -35.70729 -34.96175 -32.84273 -32.05721 -30.80287 -30.26285 -28.79103 -28.05348 -27.57271 -25.52644 -24.25698 -23.80486 -23.11685 -21.69051 -20.20001 -19.62096 -19.52070 -17.94548 -17.10451 -16.74612 -15.93903 -15.65674 -15.18050 -14.93309 -14.83039 -14.65108 -14.60308 -13.97877 -13.76066 -13.54273 -13.45060 -12.91459 -12.71842 -12.56816 -12.51745 -12.36983 -12.22731 -12.00121 -11.67338 -11.66594 -11.49105 -11.25906 -11.18246 -11.04486 -10.83734 -10.69082 -10.42828 -10.41813 -10.29311 -9.89352 -9.43928 -9.24181 -8.97944 -8.61541 -8.23020 -8.04546 -7.62470 -6.24307 -4.32268 0.78242 1.31832 2.03692 2.39581 3.18983 3.28065 3.31648 3.74991 4.07219 4.16827 4.27167 4.54725 4.61667 4.66172 4.75896 4.84175 4.90610 4.98902 5.04824 5.17783 5.23292 5.26298 5.40006 5.43331 5.48776 5.63619 5.65785 5.77716 5.83145 5.85222 5.86158 5.99158 6.06688 6.12133 6.23966 6.34848 6.45377 6.53846 6.65925 6.82558 6.85482 7.04558 7.39153 7.41005 7.45040 7.60034 7.73082 7.81218 7.91924 8.12233 8.70152 9.37137 9.60825 10.82818 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002356 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.737477 B =11881.304614 C =12013.457928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 C -0.161 4.161 4 N -0.390 5.390 5 N -0.242 5.242 6 C 0.081 3.919 7 C -0.228 4.228 8 C 0.009 3.991 9 C -0.157 4.157 10 C 0.096 3.904 11 N -0.522 5.522 12 C 0.046 3.954 13 C -0.149 4.149 14 C 0.253 3.747 15 O -0.580 6.580 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.058 3.942 25 C 0.192 3.808 26 N -0.508 5.508 27 C 0.309 3.691 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.198 0.802 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.382 0.618 44 H 0.267 0.733 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.359 8.191 -5.318 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 C -0.219 4.219 4 N -0.182 5.182 5 N -0.054 5.054 6 C -0.117 4.117 7 C -0.238 4.238 8 C -0.020 4.020 9 C -0.161 4.161 10 C -0.033 4.033 11 N -0.246 5.246 12 C -0.081 4.081 13 C -0.188 4.188 14 C 0.213 3.787 15 O -0.390 6.390 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.069 4.069 25 C 0.023 3.977 26 N -0.222 5.222 27 C 0.071 3.929 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.215 0.785 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.233 0.767 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.566 9.918 -7.278 23.112 hybrid contribution 1.393 -1.979 2.694 3.622 sum -18.173 7.940 -4.584 20.354 Atomic orbital electron populations 1.22140 0.93759 1.02740 1.03130 1.21251 0.94973 0.93581 0.83841 1.22147 1.01922 0.94709 1.03106 1.48373 1.43431 1.22091 1.04329 1.76579 1.20039 1.21628 0.87110 1.25000 0.95343 0.91657 0.99742 1.20474 1.08038 1.01410 0.93862 1.20724 0.90889 0.90479 0.99892 1.20334 1.01434 1.00435 0.93915 1.21036 0.88801 0.92606 1.00839 1.63662 1.02076 1.19909 1.38980 1.22836 0.97672 0.97810 0.89813 1.23341 0.96758 0.99774 0.98902 1.19543 0.85311 0.88169 0.85726 1.86107 1.37126 1.73222 1.42529 1.21616 1.14993 0.93328 1.27403 0.91958 1.25010 0.96441 0.96252 0.95477 1.69594 1.25984 1.20887 1.37213 0.86412 0.79325 0.82699 0.78800 1.19664 1.20768 1.20926 1.23025 0.93030 0.90170 1.00693 1.22624 0.89433 0.89888 0.95785 1.66793 1.13298 1.07032 1.35077 1.19014 0.93520 0.89816 0.90593 0.91328 0.90781 0.92274 0.87621 0.90778 0.91321 0.92105 0.78544 0.84556 0.90060 0.93959 0.91922 0.94525 0.90907 0.92662 0.76693 0.92271 0.93479 0.90916 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.44 37.16 0.35 -0.95 16 2 C 0.16 1.65 3.67 -67.93 -0.25 1.40 16 3 C -0.16 -1.39 9.43 37.16 0.35 -1.04 16 4 N -0.39 -5.01 3.32 -53.93 -0.18 -5.19 16 5 N -0.24 -3.02 12.21 31.85 0.39 -2.63 16 6 C 0.08 0.92 12.29 -15.19 -0.19 0.73 16 7 C -0.23 -3.05 6.38 -105.18 -0.67 -3.72 16 8 C 0.01 0.12 8.83 -39.36 -0.35 -0.23 16 9 C -0.16 -2.14 5.07 -104.86 -0.53 -2.67 16 10 C 0.10 1.38 4.76 -4.98 -0.02 1.36 16 11 N -0.52 -9.60 5.15 -232.68 -1.20 -10.80 16 12 C 0.05 0.88 6.26 -2.83 -0.02 0.86 16 13 C -0.15 -3.32 5.65 -24.75 -0.14 -3.46 16 14 C 0.25 6.15 0.89 -89.48 -0.08 6.07 16 15 O -0.58 -15.24 13.18 -35.23 -0.46 -15.71 16 16 C -0.53 -13.98 8.26 -34.44 -0.28 -14.26 16 17 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 19 N -0.90 -23.66 10.80 55.43 0.60 -23.06 16 20 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.06 1.20 5.85 -2.30 -0.01 1.18 16 25 C 0.19 2.59 10.82 -17.48 -0.19 2.40 16 26 N -0.51 -7.41 10.40 -12.34 -0.13 -7.53 16 27 C 0.31 4.45 7.92 -156.11 -1.24 3.21 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.11 1.06 8.05 -51.93 -0.42 0.65 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.14 1.54 6.97 -52.49 -0.37 1.18 16 37 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 38 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.04 0.60 5.50 -51.93 -0.29 0.32 16 41 H 0.07 1.75 7.85 -51.93 -0.41 1.34 16 42 H 0.05 1.24 8.04 -51.93 -0.42 0.82 16 43 H 0.38 10.24 6.93 45.56 0.32 10.55 16 44 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 46 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 47 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -29.77 381.05 -10.20 -39.97 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.58 Total: 11.34 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.36 Total: -7.38 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.52 Total: -49.21 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.46 Total: -15.71 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.77 -10.20 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.975 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds