Wall clock time and date at job start Tue Mar 31 2020 15:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46876 * 2 1 4 4 N 1.46499 * 109.47158 * 119.99497 * 2 1 3 5 5 N 1.39839 * 125.39333 * 299.96015 * 4 2 1 6 6 C 1.30229 * 110.09251 * 180.02562 * 5 4 2 7 7 C 1.45854 * 107.65914 * 359.97438 * 6 5 4 8 8 C 1.40000 * 134.25439 * 180.30073 * 7 6 5 9 9 C 1.37017 * 118.15179 * 180.19340 * 8 7 6 10 10 C 1.50699 * 120.17806 * 179.74372 * 9 8 7 11 11 N 1.46900 * 109.47353 * 269.73362 * 10 9 8 12 12 C 1.47448 * 111.00041 * 69.15552 * 11 10 9 13 13 C 1.54321 * 107.23159 * 123.26094 * 12 11 10 14 14 C 1.55422 * 103.04810 * 22.28093 * 13 12 11 15 15 O 1.42906 * 111.00250 * 82.39224 * 14 13 12 16 16 C 1.50702 * 111.10698 * 206.29460 * 14 13 12 17 17 H 1.08002 * 119.99583 * 112.17314 * 16 14 13 18 18 C 1.37874 * 120.00111 * 292.17739 * 16 14 13 19 19 N 1.31511 * 119.99903 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99891 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47036 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46987 * 119.99992 * 20 18 16 23 23 H 1.48503 * 109.46798 * 239.99732 * 20 18 16 24 24 C 1.47846 * 111.00020 * 189.99682 * 11 10 9 25 25 C 1.38803 * 119.64815 * 359.47910 * 9 8 7 26 26 N 1.31515 * 121.58767 * 0.27026 * 25 9 8 27 27 C 1.32756 * 121.47045 * 0.02562 * 26 25 9 28 28 H 1.09006 * 109.47114 * 300.00327 * 1 2 3 29 29 H 1.09000 * 109.47136 * 60.00104 * 1 2 3 30 30 H 1.08999 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47442 * 240.00193 * 2 1 3 32 32 H 1.09000 * 109.47153 * 299.99886 * 3 2 1 33 33 H 1.08996 * 109.47448 * 59.99855 * 3 2 1 34 34 H 1.09003 * 109.46730 * 179.97438 * 3 2 1 35 35 H 1.08006 * 126.16937 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.92577 * 359.97129 * 8 7 6 37 37 H 1.09001 * 109.47333 * 149.72861 * 10 9 8 38 38 H 1.09001 * 109.46990 * 29.72981 * 10 9 8 39 39 H 1.08999 * 109.88737 * 242.66366 * 12 11 10 40 40 H 1.09000 * 109.88899 * 3.85249 * 12 11 10 41 41 H 1.09004 * 110.70290 * 140.66846 * 13 12 11 42 42 H 1.09005 * 110.69934 * 263.71964 * 13 12 11 43 43 H 0.96696 * 113.99639 * 67.88556 * 15 14 13 44 44 H 0.97006 * 120.00009 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.37464 * 332.46590 * 24 11 10 46 46 H 1.08999 * 110.37318 * 94.69366 * 24 11 10 47 47 H 1.07993 * 119.20533 * 180.29049 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7516 -0.3118 2.5156 6 6 2.3326 -1.1328 3.3429 7 6 3.0385 -2.1334 2.5506 8 6 3.8221 -3.2511 2.8618 9 6 4.3449 -3.9822 1.8277 10 6 5.1996 -5.1907 2.1106 11 7 6.6082 -4.7839 2.2014 12 6 6.8477 -3.9752 3.4109 13 6 7.9570 -4.6800 4.2198 14 6 8.6812 -5.5399 3.1467 15 8 9.6304 -4.7579 2.4188 16 6 9.3411 -6.7429 3.7701 17 1 8.9699 -7.7341 3.5554 18 6 10.4184 -6.5780 4.6146 19 7 10.8705 -5.3710 4.8756 20 14 11.2358 -8.0691 5.3878 21 1 10.5425 -9.3027 4.9376 22 1 12.6610 -8.1226 4.9739 23 1 11.1534 -7.9673 6.8670 24 6 7.4989 -5.9632 2.2397 25 6 4.0785 -3.6072 0.5181 26 7 3.3363 -2.5578 0.2395 27 6 2.8079 -1.8081 1.1992 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 2.2972 -1.0823 4.4212 36 1 4.0122 -3.5272 3.8885 37 1 5.0820 -5.9156 1.3050 38 1 4.8902 -5.6419 3.0534 39 1 7.1735 -2.9740 3.1290 40 1 5.9355 -3.9172 4.0048 41 1 8.6402 -3.9500 4.6540 42 1 7.5254 -5.3114 4.9965 43 1 10.3886 -4.4697 2.9451 44 1 11.6287 -5.2550 5.4695 45 1 6.9779 -6.8185 2.6700 46 1 7.8558 -6.2020 1.2379 47 1 4.4903 -4.1914 -0.2915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:12 Heat of formation + Delta-G solvation = 36.582021 kcal Electronic energy + Delta-G solvation = -28106.170381 eV Core-core repulsion = 24289.477676 eV Total energy + Delta-G solvation = -3816.692705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57057 -40.29868 -39.15764 -36.63992 -36.48996 -34.12467 -33.99149 -32.01567 -31.22285 -30.14099 -29.77553 -28.23943 -27.03170 -25.68718 -24.93611 -23.96215 -22.84070 -21.51963 -21.34315 -20.62581 -19.07101 -18.81495 -17.77111 -16.94573 -16.90300 -16.84730 -16.56197 -16.11721 -15.74807 -15.66717 -15.45001 -14.80216 -14.62046 -14.44496 -14.20847 -14.09694 -13.75776 -13.66913 -13.46126 -13.22464 -13.12757 -13.07536 -13.03290 -12.75058 -12.69472 -12.53115 -12.42459 -12.25177 -12.21444 -12.13185 -11.73035 -11.62640 -11.38801 -11.09241 -10.58369 -10.44930 -10.02312 -9.96676 -9.23631 -9.02936 -8.20420 -6.35616 -0.18210 0.28725 1.16676 1.40642 1.44592 1.48814 1.54651 2.39379 2.70182 3.04543 3.18418 3.26390 3.38904 3.68189 3.75524 3.87657 3.94637 4.00464 4.08663 4.09032 4.13907 4.20412 4.35405 4.42110 4.50037 4.56520 4.63624 4.70910 4.74350 4.76668 4.79835 4.82960 4.89345 4.97165 5.10535 5.13155 5.16954 5.27396 5.32165 5.37908 5.51374 5.58615 5.61216 5.83388 5.90151 6.00043 6.24976 6.34260 6.45896 6.71292 6.92261 7.36624 7.54622 8.85210 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002356 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.737477 B =11881.304614 C =12013.457928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 C -0.153 4.153 4 N -0.395 5.395 5 N -0.256 5.256 6 C 0.088 3.912 7 C -0.243 4.243 8 C 0.013 3.987 9 C -0.166 4.166 10 C 0.100 3.900 11 N -0.529 5.529 12 C 0.059 3.941 13 C -0.141 4.141 14 C 0.232 3.768 15 O -0.592 6.592 16 C -0.556 4.556 17 H 0.059 0.941 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.279 1.279 24 C 0.067 3.933 25 C 0.186 3.814 26 N -0.525 5.525 27 C 0.287 3.713 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.235 0.765 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.374 0.626 44 H 0.269 0.731 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.914 7.994 -4.989 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 C -0.210 4.210 4 N -0.187 5.187 5 N -0.068 5.068 6 C -0.110 4.110 7 C -0.253 4.253 8 C -0.016 4.016 9 C -0.170 4.170 10 C -0.028 4.028 11 N -0.253 5.253 12 C -0.069 4.069 13 C -0.180 4.180 14 C 0.191 3.809 15 O -0.401 6.401 16 C -0.594 4.594 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.205 1.205 24 C -0.060 4.060 25 C 0.017 3.983 26 N -0.240 5.240 27 C 0.048 3.952 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.251 0.749 36 H 0.173 0.827 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.224 0.776 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -21.152 9.734 -6.964 24.303 hybrid contribution 1.850 -1.878 2.564 3.677 sum -19.302 7.856 -4.399 21.299 Atomic orbital electron populations 1.22075 0.92233 1.02324 1.04156 1.21511 0.96193 0.93954 0.82945 1.22093 1.00707 0.94066 1.04183 1.48696 1.43134 1.21839 1.05067 1.76565 1.20760 1.22266 0.87219 1.25627 0.93844 0.90273 1.01221 1.20751 1.08550 1.02064 0.93932 1.20941 0.90093 0.89936 1.00626 1.20261 1.02009 1.00574 0.94195 1.21084 0.86236 0.93385 1.02132 1.63568 1.04199 1.19035 1.38542 1.22673 0.97628 0.96704 0.89893 1.23159 0.97224 0.99017 0.98615 1.19881 0.85932 0.87900 0.87147 1.86100 1.37325 1.73613 1.43077 1.21903 1.15730 0.93867 1.27902 0.92242 1.25717 0.96992 0.98660 0.95928 1.69685 1.26190 1.22301 1.37449 0.85476 0.78143 0.79809 0.77966 1.19231 1.20782 1.20509 1.22852 0.92318 0.91317 0.99527 1.22932 0.89106 0.89756 0.96466 1.66810 1.14020 1.07602 1.35563 1.19378 0.94040 0.90463 0.91305 0.91821 0.88152 0.93350 0.88088 0.88086 0.91796 0.93834 0.74917 0.82749 0.88334 0.92837 0.93276 0.91516 0.93452 0.92999 0.77569 0.92183 0.92334 0.91621 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.44 71.98 0.68 -1.56 16 2 C 0.15 2.97 3.67 44.99 0.17 3.14 16 3 C -0.15 -2.48 9.43 71.98 0.68 -1.81 16 4 N -0.40 -9.89 3.32 -324.55 -1.08 -10.96 16 5 N -0.26 -6.09 12.21 -53.15 -0.65 -6.74 16 6 C 0.09 1.83 12.29 86.90 1.07 2.89 16 7 C -0.24 -6.12 6.38 -20.23 -0.13 -6.25 16 8 C 0.01 0.30 8.83 22.41 0.20 0.50 16 9 C -0.17 -4.20 5.07 -20.02 -0.10 -4.31 16 10 C 0.10 2.62 4.76 85.56 0.41 3.03 16 11 N -0.53 -18.65 5.15 -890.07 -4.59 -23.24 16 12 C 0.06 2.15 6.26 86.65 0.54 2.69 16 13 C -0.14 -6.30 5.65 31.88 0.18 -6.12 16 14 C 0.23 11.29 0.89 -10.05 -0.01 11.28 16 15 O -0.59 -31.71 13.18 -148.98 -1.96 -33.68 16 16 C -0.56 -29.08 8.26 25.60 0.21 -28.86 16 17 H 0.06 3.06 7.77 -2.91 -0.02 3.04 16 18 C 0.03 1.40 5.30 84.65 0.45 1.85 16 19 N -0.92 -48.85 10.80 21.45 0.23 -48.62 16 20 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.07 2.73 5.85 86.77 0.51 3.24 16 25 C 0.19 4.81 10.82 84.88 0.92 5.73 16 26 N -0.53 -15.02 10.40 -192.96 -2.01 -17.03 16 27 C 0.29 8.06 7.92 134.12 1.06 9.12 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 2.00 8.05 -2.39 -0.02 1.98 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.23 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.15 3.01 6.97 -2.91 -0.02 2.99 16 37 H 0.10 2.26 8.03 -2.39 -0.02 2.25 16 38 H 0.05 1.32 7.92 -2.39 -0.02 1.30 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.02 5.50 -2.39 -0.01 2.01 16 41 H 0.05 2.32 7.85 -2.38 -0.02 2.30 16 42 H 0.05 2.30 8.04 -2.38 -0.02 2.28 16 43 H 0.37 20.69 6.93 -74.06 -0.51 20.18 16 44 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 45 H 0.06 2.21 7.68 -2.39 -0.02 2.20 16 46 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -64.33 381.05 -0.73 -65.06 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.46 Total: 37.18 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 6.83 Total: -5.43 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -8.09 Total: -106.59 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.96 Total: -33.68 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -64.33 -0.73 -65.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.646 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds