Wall clock time and date at job start Tue Mar 31 2020 15:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 O 1.42903 * 109.46930 * 65.00104 * 3 2 1 6 6 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 7 7 N 1.46905 * 109.47031 * 180.02562 * 6 3 2 8 8 C 1.46900 * 110.99821 * 180.02562 * 7 6 3 9 9 C 1.50697 * 109.47121 * 180.02562 * 8 7 6 10 10 C 1.35072 * 126.07642 * 259.68900 * 9 8 7 11 11 N 1.35046 * 107.98696 * 179.87240 * 10 9 8 12 12 C 1.46508 * 125.92631 * 180.11011 * 11 10 9 13 13 C 1.50702 * 109.46585 * 125.29853 * 12 11 10 14 14 H 1.07994 * 120.00431 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99754 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47014 * 90.00546 * 17 15 13 19 19 H 1.48499 * 109.46995 * 210.00649 * 17 15 13 20 20 H 1.48502 * 109.46907 * 330.00402 * 17 15 13 21 21 N 1.40065 * 108.14542 * 0.39220 * 11 10 9 22 22 C 1.31650 * 108.09956 * 359.75492 * 21 11 10 23 23 C 1.48371 * 126.04140 * 180.02562 * 22 21 11 24 24 C 1.39772 * 120.90533 * 144.71965 * 23 22 21 25 25 C 1.37968 * 119.01920 * 179.77769 * 24 23 22 26 26 N 1.31931 * 120.87999 * 0.51185 * 25 24 23 27 27 C 1.31941 * 122.00398 * 359.73816 * 26 25 24 28 28 C 1.37954 * 120.88275 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96694 * 114.00128 * 60.00073 * 5 3 2 35 35 H 1.08996 * 109.47443 * 300.00108 * 6 3 2 36 36 H 1.09000 * 109.46961 * 60.00367 * 6 3 2 37 37 H 1.00901 * 110.99927 * 303.95206 * 7 6 3 38 38 H 1.09005 * 109.46899 * 299.99975 * 8 7 6 39 39 H 1.09001 * 109.47772 * 59.99757 * 8 7 6 40 40 H 1.08001 * 126.00246 * 0.02562 * 10 9 8 41 41 H 1.08993 * 109.47088 * 245.29841 * 12 11 10 42 42 H 1.08996 * 109.47145 * 5.30297 * 12 11 10 43 43 H 0.96996 * 119.99635 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.48726 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.55560 * 180.22777 * 25 24 23 46 46 H 1.08005 * 119.55486 * 180.02562 * 27 26 25 47 47 H 1.07994 * 120.49215 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8294 -0.1251 8 6 5.5180 2.8703 -0.2452 9 6 5.9825 4.3039 -0.2404 10 6 6.3242 5.0330 -1.3249 11 7 6.6800 6.2657 -0.9035 12 6 7.1184 7.3727 -1.7572 13 6 6.2585 8.5817 -1.4928 14 1 5.4653 8.5308 -0.7618 15 6 6.4853 9.7533 -2.1836 16 7 7.4517 9.8154 -3.0735 17 14 5.4200 11.2522 -1.8554 18 1 6.0290 12.0647 -0.7717 19 1 5.3215 12.0697 -3.0912 20 1 4.0626 10.8139 -1.4423 21 7 6.5636 6.3002 0.4918 22 6 6.1433 5.1200 0.8965 23 6 5.8844 4.7202 2.3017 24 6 4.8406 3.8464 2.6187 25 6 4.6376 3.4969 3.9379 26 7 5.4062 3.9838 4.8933 27 6 6.3984 4.8149 4.6372 28 6 6.6743 5.2115 3.3450 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0141 1.6542 2.0139 35 1 3.9995 0.9053 0.7161 36 1 3.8532 0.9571 -1.0571 37 1 3.6167 3.3680 -0.8574 38 1 5.9665 2.3406 0.5954 39 1 5.8197 2.3934 -1.1777 40 1 6.3122 4.6909 -2.3492 41 1 8.1588 7.6115 -1.5369 42 1 7.0259 7.0830 -2.8039 43 1 7.6110 10.6395 -3.5597 44 1 4.2050 3.4474 1.8421 45 1 3.8359 2.8194 4.1922 46 1 7.0032 5.1891 5.4500 47 1 7.4882 5.8917 3.1425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594973328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:31 Heat of formation + Delta-G solvation = 49.714081 kcal Electronic energy + Delta-G solvation = -27813.878620 eV Core-core repulsion = 23997.755364 eV Total energy + Delta-G solvation = -3816.123256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.75543 -39.44484 -38.44522 -35.65502 -33.97500 -33.01182 -32.83157 -31.12901 -30.88762 -30.27913 -28.22425 -27.00463 -24.52946 -24.17069 -23.07811 -22.65827 -22.02719 -21.60038 -20.02390 -19.42206 -17.05336 -16.69836 -16.48079 -16.18994 -15.76931 -15.65291 -15.34946 -15.13666 -14.89416 -14.56783 -14.30673 -14.02658 -13.62653 -13.48944 -13.35466 -13.23993 -13.05507 -12.55067 -12.46722 -12.28667 -12.15274 -12.00323 -11.81053 -11.59893 -11.28633 -11.24925 -11.00221 -10.97087 -10.90699 -10.31560 -10.12094 -10.01157 -9.94378 -9.44249 -9.26261 -8.86908 -8.70226 -8.47745 -8.33506 -7.73402 -6.31482 -4.36806 1.31255 1.45695 2.60372 3.20022 3.21298 3.27167 3.30686 3.40371 3.99405 4.20490 4.26909 4.39884 4.56818 4.69304 4.77767 4.80941 4.82995 5.00990 5.05235 5.11143 5.18629 5.26650 5.36448 5.40703 5.45334 5.46653 5.54587 5.57002 5.59457 5.63879 5.75947 5.93485 5.96689 5.97471 6.04843 6.19688 6.28459 6.44595 6.65312 6.85491 6.92712 6.95217 7.01665 7.19890 7.33858 7.59078 7.61800 7.77746 7.86645 8.20996 8.42899 8.71852 9.29698 10.77511 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.003294 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.670748 B = 8497.722397 C =10070.470216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.095 0.905 5 O -0.546 6.546 6 C 0.023 3.977 7 N -0.675 5.675 8 C 0.144 3.856 9 C -0.246 4.246 10 C 0.055 3.945 11 N -0.317 5.317 12 C 0.256 3.744 13 C -0.530 4.530 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.259 5.259 22 C 0.086 3.914 23 C 0.048 3.952 24 C -0.156 4.156 25 C 0.085 3.915 26 N -0.494 5.494 27 C 0.086 3.914 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.370 0.630 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.346 0.654 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.165 0.835 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.268 0.732 44 H 0.177 0.823 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -20.265 5.565 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.049 3.951 4 H 0.113 0.887 5 O -0.350 6.350 6 C -0.107 4.107 7 N -0.307 5.307 8 C 0.015 3.985 9 C -0.259 4.259 10 C -0.095 4.095 11 N -0.097 5.097 12 C 0.139 3.861 13 C -0.569 4.569 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.084 5.084 22 C -0.077 4.077 23 C 0.038 3.962 24 C -0.177 4.177 25 C -0.072 4.072 26 N -0.204 5.204 27 C -0.070 4.070 28 C -0.174 4.174 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.217 0.783 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.165 0.835 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.182 0.818 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.194 0.806 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.115 -18.589 6.762 21.021 hybrid contribution 0.036 -0.176 -1.898 1.906 sum -7.080 -18.765 4.864 20.638 Atomic orbital electron populations 1.21691 0.95059 1.01291 1.02548 1.22215 0.97213 0.97329 1.02612 1.21941 0.92388 0.92273 0.88515 0.88697 1.86641 1.76245 1.57023 1.15071 1.22738 0.95996 0.90995 1.00983 1.60386 1.05969 1.10667 1.53683 1.20024 0.86804 0.91955 0.99699 1.19554 1.17048 0.97799 0.91453 1.22242 1.01248 0.86715 0.99292 1.49424 1.45812 1.10114 1.04312 1.19799 0.96815 0.81955 0.87577 1.21226 1.17074 0.95088 1.23484 0.91213 1.24939 0.95508 0.98972 0.94530 1.69916 1.30421 1.28158 1.24810 0.86314 0.80646 0.81713 0.77811 1.20223 1.20932 1.19601 1.77672 1.20928 1.18831 0.90931 1.20287 1.02828 0.92306 0.92256 1.18207 0.94086 0.94432 0.89518 1.23110 0.97893 0.97400 0.99250 1.22591 0.97617 0.98184 0.88787 1.67546 1.05182 1.10086 1.37596 1.22530 0.94693 0.94452 0.95345 1.22278 1.01070 1.00670 0.93351 0.91910 0.93030 0.92798 0.91588 0.91322 0.78298 0.90752 0.94571 0.83501 0.90925 0.94985 0.81791 0.93550 0.92635 0.92247 0.80595 0.83229 0.83168 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.81 37.16 0.36 -0.61 16 2 C -0.16 -0.94 5.61 -26.73 -0.15 -1.09 16 3 C 0.11 0.83 3.17 -26.73 -0.08 0.74 16 4 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 5 O -0.55 -5.00 12.74 -35.23 -0.45 -5.45 16 6 C 0.02 0.18 5.35 -3.82 -0.02 0.16 16 7 N -0.68 -7.17 3.96 -115.05 -0.46 -7.63 16 8 C 0.14 1.73 5.11 -4.98 -0.03 1.71 16 9 C -0.25 -4.00 5.60 -104.76 -0.59 -4.59 16 10 C 0.06 0.98 11.33 -17.26 -0.20 0.78 16 11 N -0.32 -6.94 3.67 -62.58 -0.23 -7.17 16 12 C 0.26 6.27 6.26 -5.19 -0.03 6.24 16 13 C -0.53 -14.51 9.24 -34.44 -0.32 -14.83 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.06 1.73 5.46 -17.81 -0.10 1.63 16 16 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 17 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.26 -5.80 12.42 33.42 0.42 -5.38 16 22 C 0.09 1.62 6.78 -82.78 -0.56 1.06 16 23 C 0.05 0.79 5.83 -104.58 -0.61 0.18 16 24 C -0.16 -2.20 8.90 -39.11 -0.35 -2.55 16 25 C 0.08 1.11 11.17 -17.61 -0.20 0.91 16 26 N -0.49 -7.18 10.35 -13.34 -0.14 -7.32 16 27 C 0.09 1.21 11.17 -17.61 -0.20 1.01 16 28 C -0.15 -2.39 9.87 -39.11 -0.39 -2.78 16 29 H 0.06 0.46 7.82 -51.93 -0.41 0.06 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.37 2.28 9.04 45.56 0.41 2.69 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.35 3.95 8.72 -39.29 -0.34 3.61 16 38 H 0.07 0.87 7.80 -51.93 -0.41 0.47 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.18 2.34 4.88 -52.49 -0.26 2.08 16 45 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 46 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -31.23 395.90 -9.08 -40.31 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.46 Total: 6.64 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.44 Total: -12.02 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.33 Total: -51.71 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.45 Total: -5.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.23 -9.08 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594973328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.023 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds