Wall clock time and date at job start Tue Mar 31 2020 15:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 O 1.42903 * 109.46930 * 65.00104 * 3 2 1 6 6 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 7 7 N 1.46905 * 109.47031 * 180.02562 * 6 3 2 8 8 C 1.46900 * 110.99821 * 180.02562 * 7 6 3 9 9 C 1.50697 * 109.47121 * 180.02562 * 8 7 6 10 10 C 1.35072 * 126.07642 * 259.68900 * 9 8 7 11 11 N 1.35046 * 107.98696 * 179.87240 * 10 9 8 12 12 C 1.46508 * 125.92631 * 180.11011 * 11 10 9 13 13 C 1.50702 * 109.46585 * 125.29853 * 12 11 10 14 14 H 1.07994 * 120.00431 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99754 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47014 * 90.00546 * 17 15 13 19 19 H 1.48499 * 109.46995 * 210.00649 * 17 15 13 20 20 H 1.48502 * 109.46907 * 330.00402 * 17 15 13 21 21 N 1.40065 * 108.14542 * 0.39220 * 11 10 9 22 22 C 1.31650 * 108.09956 * 359.75492 * 21 11 10 23 23 C 1.48371 * 126.04140 * 180.02562 * 22 21 11 24 24 C 1.39772 * 120.90533 * 144.71965 * 23 22 21 25 25 C 1.37968 * 119.01920 * 179.77769 * 24 23 22 26 26 N 1.31931 * 120.87999 * 0.51185 * 25 24 23 27 27 C 1.31941 * 122.00398 * 359.73816 * 26 25 24 28 28 C 1.37954 * 120.88275 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96694 * 114.00128 * 60.00073 * 5 3 2 35 35 H 1.08996 * 109.47443 * 300.00108 * 6 3 2 36 36 H 1.09000 * 109.46961 * 60.00367 * 6 3 2 37 37 H 1.00901 * 110.99927 * 303.95206 * 7 6 3 38 38 H 1.09005 * 109.46899 * 299.99975 * 8 7 6 39 39 H 1.09001 * 109.47772 * 59.99757 * 8 7 6 40 40 H 1.08001 * 126.00246 * 0.02562 * 10 9 8 41 41 H 1.08993 * 109.47088 * 245.29841 * 12 11 10 42 42 H 1.08996 * 109.47145 * 5.30297 * 12 11 10 43 43 H 0.96996 * 119.99635 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.48726 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.55560 * 180.22777 * 25 24 23 46 46 H 1.08005 * 119.55486 * 180.02562 * 27 26 25 47 47 H 1.07994 * 120.49215 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8294 -0.1251 8 6 5.5180 2.8703 -0.2452 9 6 5.9825 4.3039 -0.2404 10 6 6.3242 5.0330 -1.3249 11 7 6.6800 6.2657 -0.9035 12 6 7.1184 7.3727 -1.7572 13 6 6.2585 8.5817 -1.4928 14 1 5.4653 8.5308 -0.7618 15 6 6.4853 9.7533 -2.1836 16 7 7.4517 9.8154 -3.0735 17 14 5.4200 11.2522 -1.8554 18 1 6.0290 12.0647 -0.7717 19 1 5.3215 12.0697 -3.0912 20 1 4.0626 10.8139 -1.4423 21 7 6.5636 6.3002 0.4918 22 6 6.1433 5.1200 0.8965 23 6 5.8844 4.7202 2.3017 24 6 4.8406 3.8464 2.6187 25 6 4.6376 3.4969 3.9379 26 7 5.4062 3.9838 4.8933 27 6 6.3984 4.8149 4.6372 28 6 6.6743 5.2115 3.3450 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0141 1.6542 2.0139 35 1 3.9995 0.9053 0.7161 36 1 3.8532 0.9571 -1.0571 37 1 3.6167 3.3680 -0.8574 38 1 5.9665 2.3406 0.5954 39 1 5.8197 2.3934 -1.1777 40 1 6.3122 4.6909 -2.3492 41 1 8.1588 7.6115 -1.5369 42 1 7.0259 7.0830 -2.8039 43 1 7.6110 10.6395 -3.5597 44 1 4.2050 3.4474 1.8421 45 1 3.8359 2.8194 4.1922 46 1 7.0032 5.1891 5.4500 47 1 7.4882 5.8917 3.1425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594973328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:30 Heat of formation + Delta-G solvation = 28.437028 kcal Electronic energy + Delta-G solvation = -27814.801262 eV Core-core repulsion = 23997.755364 eV Total energy + Delta-G solvation = -3817.045898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17324 -40.61833 -39.08520 -36.62823 -35.65208 -34.41575 -33.56629 -32.51756 -32.08127 -31.53208 -29.51643 -28.31242 -25.86507 -25.48896 -24.21192 -23.67418 -23.16821 -22.19095 -21.43952 -20.76108 -18.69792 -18.17305 -17.42802 -17.08585 -16.93276 -16.84853 -16.43084 -16.20708 -16.03353 -15.80876 -15.47737 -15.12734 -14.81496 -14.63932 -14.44451 -14.25059 -14.15713 -14.01224 -13.70926 -13.55008 -13.21754 -12.93884 -12.83637 -12.77467 -12.64082 -12.48350 -12.42642 -12.23691 -11.79635 -11.75674 -11.55626 -11.49221 -10.97783 -10.76583 -10.62248 -10.39534 -9.99028 -9.86119 -9.32308 -9.09853 -8.38859 -6.52399 0.07769 0.34821 1.16447 1.33873 1.35693 1.46482 1.80746 1.90704 2.30874 2.93399 3.02954 3.29111 3.53625 3.69247 3.80029 3.86054 3.94036 4.13622 4.24199 4.24396 4.27012 4.29688 4.37284 4.40379 4.51259 4.62967 4.68405 4.77343 4.84068 4.87664 4.89048 4.97779 5.00755 5.03890 5.07453 5.17390 5.19714 5.21021 5.42266 5.47812 5.51190 5.59822 5.71701 5.81747 5.91364 6.13946 6.25122 6.47736 6.59228 6.94170 7.10074 7.11892 7.17959 8.69168 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.003294 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.670748 B = 8497.722397 C =10070.470216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.081 0.919 5 O -0.567 6.567 6 C 0.028 3.972 7 N -0.683 5.683 8 C 0.153 3.847 9 C -0.234 4.234 10 C 0.050 3.950 11 N -0.346 5.346 12 C 0.272 3.728 13 C -0.548 4.548 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.269 1.269 20 H -0.274 1.274 21 N -0.317 5.317 22 C 0.087 3.913 23 C 0.021 3.979 24 C -0.149 4.149 25 C 0.092 3.908 26 N -0.503 5.503 27 C 0.089 3.911 28 C -0.168 4.168 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.383 0.617 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.341 0.659 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.196 0.804 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.273 0.727 44 H 0.187 0.813 45 H 0.189 0.811 46 H 0.177 0.823 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -22.499 6.265 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.052 3.948 4 H 0.099 0.901 5 O -0.373 6.373 6 C -0.101 4.101 7 N -0.314 5.314 8 C 0.024 3.976 9 C -0.246 4.246 10 C -0.098 4.098 11 N -0.126 5.126 12 C 0.153 3.847 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.193 1.193 20 H -0.198 1.198 21 N -0.141 5.141 22 C -0.077 4.077 23 C 0.011 3.989 24 C -0.170 4.170 25 C -0.064 4.064 26 N -0.213 5.213 27 C -0.067 4.067 28 C -0.189 4.189 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.232 0.768 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.213 0.787 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.204 0.796 45 H 0.206 0.794 46 H 0.194 0.806 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.527 -20.857 7.470 23.739 hybrid contribution 0.433 0.390 -2.020 2.102 sum -8.095 -20.467 5.451 22.675 Atomic orbital electron populations 1.21692 0.95660 1.01600 1.01722 1.22148 0.96580 0.96284 1.03628 1.21901 0.92184 0.92963 0.87709 0.90051 1.86610 1.76730 1.57917 1.16074 1.22763 0.95921 0.89291 1.02081 1.60307 1.04905 1.12556 1.53611 1.19993 0.87773 0.88874 1.00954 1.20029 1.15216 0.99461 0.89889 1.22890 1.00311 0.85304 1.01290 1.49108 1.48366 1.10890 1.04224 1.19298 0.94880 0.82422 0.88063 1.21357 1.17139 0.96829 1.23263 0.93326 1.25694 0.96602 1.01433 0.94210 1.69983 1.31367 1.29089 1.25309 0.85400 0.78738 0.78476 0.78153 1.19977 1.19340 1.19836 1.77582 1.23748 1.21339 0.91434 1.20846 1.01030 0.91716 0.94070 1.18408 0.95807 0.96090 0.88620 1.23237 0.96986 0.96558 1.00210 1.23195 0.97669 0.97635 0.87910 1.67666 1.05398 1.10232 1.38039 1.22885 0.94692 0.93863 0.95225 1.22309 1.01263 1.01140 0.94184 0.92901 0.92151 0.93485 0.90357 0.90452 0.76841 0.89509 0.93408 0.84087 0.90388 0.93030 0.78702 0.96296 0.92397 0.91756 0.79635 0.79401 0.80635 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 71.98 0.71 -0.99 16 2 C -0.15 -1.39 5.61 30.59 0.17 -1.22 16 3 C 0.11 1.45 3.17 30.59 0.10 1.54 16 4 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 5 O -0.57 -9.13 12.74 -148.98 -1.90 -11.03 16 6 C 0.03 0.35 5.35 86.30 0.46 0.82 16 7 N -0.68 -12.91 3.96 -517.92 -2.05 -14.96 16 8 C 0.15 3.32 5.11 85.56 0.44 3.76 16 9 C -0.23 -7.47 5.60 -19.95 -0.11 -7.58 16 10 C 0.05 1.78 11.33 83.47 0.95 2.72 16 11 N -0.35 -15.76 3.67 -351.91 -1.29 -17.05 16 12 C 0.27 14.01 6.26 85.63 0.54 14.54 16 13 C -0.55 -31.14 9.24 25.60 0.24 -30.90 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 15 C 0.02 1.18 5.46 84.66 0.46 1.64 16 16 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 N -0.32 -14.85 12.42 -48.17 -0.60 -15.45 16 22 C 0.09 3.33 6.78 42.51 0.29 3.62 16 23 C 0.02 0.69 5.83 -19.84 -0.12 0.57 16 24 C -0.15 -3.94 8.90 22.58 0.20 -3.74 16 25 C 0.09 2.14 11.17 84.61 0.95 3.08 16 26 N -0.50 -13.41 10.35 -196.13 -2.03 -15.44 16 27 C 0.09 2.39 11.17 84.61 0.95 3.33 16 28 C -0.17 -5.29 9.87 22.57 0.22 -5.07 16 29 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.38 3.60 9.04 -74.06 -0.67 2.93 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.34 7.20 8.72 -89.69 -0.78 6.42 16 38 H 0.08 1.65 7.80 -2.38 -0.02 1.63 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.20 5.35 8.06 -2.91 -0.02 5.33 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 2.89 8.07 -2.39 -0.02 2.87 16 43 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.19 4.49 4.88 -2.91 -0.01 4.47 16 45 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 46 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.81 395.90 0.41 -69.40 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.46 Total: 23.95 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 6.43 Total: -13.87 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -5.69 Total: -114.68 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -1.90 Total: -11.03 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.81 0.41 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594973328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.839 kcal (2) G-P(sol) polarization free energy of solvation -69.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds