Wall clock time and date at job start Tue Mar 31 2020 15:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99684 * 2 1 4 4 N 1.46507 * 109.46746 * 125.00257 * 3 2 1 5 5 C 1.46497 * 119.99809 * 269.99841 * 4 3 2 6 6 C 1.50703 * 109.47083 * 270.00220 * 5 4 3 7 7 H 1.07999 * 119.99859 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00359 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46782 * 59.99837 * 10 8 6 12 12 H 1.48493 * 109.46918 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46927 * 299.99956 * 10 8 6 14 14 C 1.34772 * 120.00036 * 89.99649 * 4 3 2 15 15 O 1.21279 * 119.99776 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00199 * 359.97438 * 14 4 3 17 17 C 1.53005 * 109.47154 * 179.97438 * 16 14 4 18 18 C 1.53121 * 109.52154 * 174.99868 * 17 16 14 19 19 C 1.53039 * 109.27826 * 177.62051 * 18 17 16 20 20 N 1.46844 * 109.52732 * 300.82778 * 19 18 17 21 21 C 1.46897 * 110.99958 * 185.83801 * 20 19 18 22 22 C 1.52996 * 109.47429 * 76.81778 * 21 20 19 23 23 F 1.39903 * 109.46944 * 294.21495 * 22 21 20 24 24 F 1.39906 * 109.46951 * 54.21190 * 22 21 20 25 25 C 1.46847 * 111.19943 * 61.73424 * 20 19 18 26 26 C 1.53034 * 109.52735 * 298.26183 * 25 20 19 27 27 H 1.08002 * 119.99788 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99729 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.99729 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47321 * 5.00217 * 3 2 1 31 31 H 1.08996 * 109.46863 * 244.99464 * 3 2 1 32 32 H 1.09001 * 109.47175 * 29.99912 * 5 4 3 33 33 H 1.08997 * 109.47116 * 149.99965 * 5 4 3 34 34 H 0.96996 * 120.00445 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46943 * 59.99970 * 16 14 4 36 36 H 1.09001 * 109.47288 * 299.99997 * 16 14 4 37 37 H 1.08994 * 109.51860 * 54.87885 * 17 16 14 38 38 H 1.09005 * 109.50058 * 57.68784 * 18 17 16 39 39 H 1.08997 * 109.50916 * 297.56891 * 18 17 16 40 40 H 1.08994 * 109.46001 * 180.80263 * 19 18 17 41 41 H 1.09001 * 109.44640 * 60.83424 * 19 18 17 42 42 H 1.09002 * 109.47087 * 316.81238 * 21 20 19 43 43 H 1.09001 * 109.46950 * 196.81755 * 21 20 19 44 44 H 1.08995 * 109.47569 * 174.21265 * 22 21 20 45 45 H 1.09002 * 109.46079 * 58.28074 * 25 20 19 46 46 H 1.09001 * 109.46145 * 178.24056 * 25 20 19 47 47 H 1.09004 * 109.50548 * 299.24176 * 26 25 20 48 48 H 1.09003 * 109.50580 * 179.12004 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0664 3.6087 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8993 3.6778 11 1 2.1378 6.5872 2.5867 12 1 2.4338 6.4393 4.9893 13 1 4.3317 6.1281 3.5126 14 6 4.2497 0.8661 0.9824 15 8 5.0199 0.8887 1.9190 16 6 4.6969 0.3173 -0.3479 17 6 6.1535 -0.1402 -0.2472 18 6 6.5708 -0.8113 -1.5588 19 6 8.0450 -1.2133 -1.4739 20 7 8.8659 -0.0202 -1.2307 21 6 10.2972 -0.3469 -1.2810 22 6 10.7338 -0.5032 -2.7389 23 9 10.0965 -1.6151 -3.2999 24 9 10.3841 0.6459 -3.4562 25 6 8.5153 0.6143 0.0463 26 6 7.0552 1.0710 0.0067 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4887 1.6965 2.5459 33 1 3.0989 1.3602 3.2259 34 1 1.7317 3.9741 5.4300 35 1 4.6120 1.0937 -1.1083 36 1 4.0677 -0.5297 -0.6216 37 1 6.2565 -0.8496 0.5738 38 1 6.4308 -0.1141 -2.3849 39 1 5.9604 -1.6991 -1.7237 40 1 8.3491 -1.6786 -2.4114 41 1 8.1817 -1.9209 -0.6561 42 1 10.4760 -1.2797 -0.7461 43 1 10.8694 0.4549 -0.8143 44 1 11.8139 -0.6436 -2.7818 45 1 8.6500 -0.1019 0.8568 46 1 9.1611 1.4765 0.2128 47 1 6.9227 1.7977 -0.7948 48 1 6.7908 1.5279 0.9604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602153891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:59 Heat of formation + Delta-G solvation = -123.947964 kcal Electronic energy + Delta-G solvation = -29195.395945 eV Core-core repulsion = 24921.052951 eV Total energy + Delta-G solvation = -4274.342994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.09316 -47.08250 -39.69751 -38.50097 -35.73754 -34.58374 -33.14797 -32.04282 -30.78717 -30.49355 -28.22729 -26.80422 -25.34242 -23.70458 -23.09049 -22.45719 -21.51371 -19.92033 -19.63111 -18.23603 -17.81884 -17.49603 -16.56924 -16.49214 -16.21011 -15.65494 -15.41216 -14.98685 -14.86042 -14.49677 -14.35589 -14.11864 -14.02077 -13.79449 -13.43823 -13.23119 -12.96773 -12.91923 -12.67293 -12.41533 -12.25342 -12.12541 -11.71255 -11.62032 -11.58159 -11.30511 -11.21967 -11.12727 -10.95260 -10.87339 -10.57912 -10.45540 -10.19193 -10.17716 -10.10078 -9.62673 -9.16334 -8.74095 -8.53307 -8.41491 -7.64004 -6.02407 -4.07146 2.46842 3.32705 3.37029 3.39119 3.46085 3.50038 3.69871 4.01526 4.05383 4.25398 4.46110 4.65635 4.80918 4.87260 4.97093 5.09715 5.15319 5.18891 5.28612 5.31261 5.34332 5.41961 5.42396 5.55118 5.56152 5.68616 5.71674 5.78309 5.88347 5.98157 6.03272 6.07805 6.10452 6.20448 6.25701 6.55554 6.64061 6.80833 6.83670 6.93449 6.97048 7.12914 7.47867 7.59358 7.94323 8.26110 8.46834 8.92801 9.15013 9.57971 11.05606 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.002884 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.850152 B = 9705.600270 C =11101.166300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.248 3.752 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.505 3.495 15 O -0.539 6.539 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.110 4.110 19 C 0.043 3.957 20 N -0.533 5.533 21 C 0.000 4.000 22 C 0.270 3.730 23 F -0.207 7.207 24 F -0.195 7.195 25 C 0.060 3.940 26 C -0.116 4.116 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 -10.737 -15.377 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.293 3.707 15 O -0.417 6.417 16 C -0.176 4.176 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.130 4.130 22 C 0.216 3.784 23 F -0.188 7.188 24 F -0.177 7.177 25 C -0.067 4.067 26 C -0.154 4.154 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.435 -10.327 -15.056 22.090 hybrid contribution 0.100 0.410 0.665 0.788 sum 12.535 -9.917 -14.390 21.507 Atomic orbital electron populations 1.23812 0.95874 1.01714 1.00801 1.23434 0.96371 0.99083 0.99709 1.20568 0.93128 0.95180 0.89893 1.48245 1.10676 1.60257 1.13438 1.19234 0.95274 0.93682 0.78949 1.21406 1.40457 0.93393 1.01177 0.92530 1.24928 0.95095 0.98676 0.95363 1.69920 1.42095 1.36242 1.05173 0.86583 0.78837 0.85018 0.77127 1.20252 1.21220 1.20179 1.20390 0.82136 0.78421 0.89799 1.90617 1.52312 1.56600 1.42220 1.21776 0.97231 1.01715 0.96884 1.20923 0.93090 0.97774 0.97138 1.21648 0.94372 1.00540 0.98263 1.22441 0.93943 0.90506 1.01585 1.61930 1.01536 1.27508 1.34820 1.23209 0.92352 1.03130 0.94272 1.21981 0.96031 0.71852 0.88557 1.92896 1.84613 1.54026 1.87265 1.93005 1.94081 1.50540 1.80043 1.22143 0.98180 0.98138 0.88203 1.21772 0.92009 0.97518 1.04059 0.88846 0.88311 0.87853 0.89613 0.90720 0.95186 0.93997 0.92709 0.89515 0.89804 0.90882 0.91038 0.91571 0.89283 0.94896 0.91678 0.87963 0.87350 0.94626 0.90791 0.91752 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 14.32 29.01 0.42 -1.99 16 2 C -0.17 -2.37 9.74 -36.03 -0.35 -2.72 16 3 C 0.14 2.21 5.65 -5.19 -0.03 2.19 16 4 N -0.60 -12.45 2.44 -176.44 -0.43 -12.88 16 5 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 6 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.51 10.18 7.41 -10.99 -0.08 10.10 16 15 O -0.54 -12.98 13.57 5.56 0.08 -12.90 16 16 C -0.14 -1.97 3.73 -27.88 -0.10 -2.07 16 17 C -0.07 -0.97 1.89 -90.49 -0.17 -1.14 16 18 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 19 C 0.04 0.47 5.23 -3.83 -0.02 0.45 16 20 N -0.53 -5.98 4.40 -234.68 -1.03 -7.02 16 21 C 0.00 0.00 5.38 -3.83 -0.02 -0.02 16 22 C 0.27 2.12 5.59 37.16 0.21 2.33 16 23 F -0.21 -2.00 14.68 2.25 0.03 -1.97 16 24 F -0.20 -2.15 17.15 2.25 0.04 -2.11 16 25 C 0.06 0.75 5.42 -3.84 -0.02 0.73 16 26 C -0.12 -1.71 5.09 -26.65 -0.14 -1.85 16 27 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 29 H 0.10 1.38 7.83 -52.49 -0.41 0.97 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 31 H 0.07 1.01 6.44 -51.93 -0.33 0.68 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 36 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 37 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.95 5.47 -51.93 -0.28 0.67 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.46 7.98 -51.93 -0.41 0.04 16 43 H 0.10 0.69 7.77 -51.93 -0.40 0.29 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 1.74 6.04 -51.93 -0.31 1.43 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -33.24 387.91 -8.55 -41.79 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.89 Total: 0.85 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.90 Total: -2.49 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.73 Total: -45.89 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.24 -8.55 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602153891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.159 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds