Wall clock time and date at job start Tue Mar 31 2020 15:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99684 * 2 1 4 4 N 1.46507 * 109.46746 * 125.00257 * 3 2 1 5 5 C 1.46497 * 119.99809 * 269.99841 * 4 3 2 6 6 C 1.50703 * 109.47083 * 270.00220 * 5 4 3 7 7 H 1.07999 * 119.99859 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00359 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46782 * 59.99837 * 10 8 6 12 12 H 1.48493 * 109.46918 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46927 * 299.99956 * 10 8 6 14 14 C 1.34772 * 120.00036 * 89.99649 * 4 3 2 15 15 O 1.21279 * 119.99776 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00199 * 359.97438 * 14 4 3 17 17 C 1.53005 * 109.47154 * 179.97438 * 16 14 4 18 18 C 1.53121 * 109.52154 * 174.99868 * 17 16 14 19 19 C 1.53039 * 109.27826 * 177.62051 * 18 17 16 20 20 N 1.46844 * 109.52732 * 300.82778 * 19 18 17 21 21 C 1.46897 * 110.99958 * 185.83801 * 20 19 18 22 22 C 1.52996 * 109.47429 * 76.81778 * 21 20 19 23 23 F 1.39903 * 109.46944 * 294.21495 * 22 21 20 24 24 F 1.39906 * 109.46951 * 54.21190 * 22 21 20 25 25 C 1.46847 * 111.19943 * 61.73424 * 20 19 18 26 26 C 1.53034 * 109.52735 * 298.26183 * 25 20 19 27 27 H 1.08002 * 119.99788 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99729 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.99729 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47321 * 5.00217 * 3 2 1 31 31 H 1.08996 * 109.46863 * 244.99464 * 3 2 1 32 32 H 1.09001 * 109.47175 * 29.99912 * 5 4 3 33 33 H 1.08997 * 109.47116 * 149.99965 * 5 4 3 34 34 H 0.96996 * 120.00445 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46943 * 59.99970 * 16 14 4 36 36 H 1.09001 * 109.47288 * 299.99997 * 16 14 4 37 37 H 1.08994 * 109.51860 * 54.87885 * 17 16 14 38 38 H 1.09005 * 109.50058 * 57.68784 * 18 17 16 39 39 H 1.08997 * 109.50916 * 297.56891 * 18 17 16 40 40 H 1.08994 * 109.46001 * 180.80263 * 19 18 17 41 41 H 1.09001 * 109.44640 * 60.83424 * 19 18 17 42 42 H 1.09002 * 109.47087 * 316.81238 * 21 20 19 43 43 H 1.09001 * 109.46950 * 196.81755 * 21 20 19 44 44 H 1.08995 * 109.47569 * 174.21265 * 22 21 20 45 45 H 1.09002 * 109.46079 * 58.28074 * 25 20 19 46 46 H 1.09001 * 109.46145 * 178.24056 * 25 20 19 47 47 H 1.09004 * 109.50548 * 299.24176 * 26 25 20 48 48 H 1.09003 * 109.50580 * 179.12004 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3436 2.4805 7 1 3.3040 3.8369 1.6369 8 6 2.5193 4.0664 3.6087 9 7 1.9599 3.4657 4.6361 10 14 2.8737 5.8993 3.6778 11 1 2.1378 6.5872 2.5867 12 1 2.4338 6.4393 4.9893 13 1 4.3317 6.1281 3.5126 14 6 4.2497 0.8661 0.9824 15 8 5.0199 0.8887 1.9190 16 6 4.6969 0.3173 -0.3479 17 6 6.1535 -0.1402 -0.2472 18 6 6.5708 -0.8113 -1.5588 19 6 8.0450 -1.2133 -1.4739 20 7 8.8659 -0.0202 -1.2307 21 6 10.2972 -0.3469 -1.2810 22 6 10.7338 -0.5032 -2.7389 23 9 10.0965 -1.6151 -3.2999 24 9 10.3841 0.6459 -3.4562 25 6 8.5153 0.6143 0.0463 26 6 7.0552 1.0710 0.0067 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4887 1.6965 2.5459 33 1 3.0989 1.3602 3.2259 34 1 1.7317 3.9741 5.4300 35 1 4.6120 1.0937 -1.1083 36 1 4.0677 -0.5297 -0.6216 37 1 6.2565 -0.8496 0.5738 38 1 6.4308 -0.1141 -2.3849 39 1 5.9604 -1.6991 -1.7237 40 1 8.3491 -1.6786 -2.4114 41 1 8.1817 -1.9209 -0.6561 42 1 10.4760 -1.2797 -0.7461 43 1 10.8694 0.4549 -0.8143 44 1 11.8139 -0.6436 -2.7818 45 1 8.6500 -0.1019 0.8568 46 1 9.1611 1.4765 0.2128 47 1 6.9227 1.7977 -0.7948 48 1 6.7908 1.5279 0.9604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602153891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:58 Heat of formation + Delta-G solvation = -144.243803 kcal Electronic energy + Delta-G solvation = -29196.276039 eV Core-core repulsion = 24921.052951 eV Total energy + Delta-G solvation = -4275.223087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.75936 -47.77515 -41.06752 -39.68274 -37.23155 -35.68532 -35.04248 -33.63899 -31.77252 -31.51704 -29.78299 -28.13235 -26.82306 -25.14927 -24.15653 -23.63380 -22.55915 -21.11158 -20.68010 -19.74987 -18.62382 -18.47941 -18.16816 -17.73366 -17.26470 -17.25393 -16.43190 -16.34851 -16.12052 -15.85354 -15.57177 -15.27183 -14.96350 -14.76686 -14.58086 -14.20905 -14.17534 -14.13634 -13.95845 -13.71908 -13.35671 -13.32243 -13.11664 -12.98916 -12.90701 -12.66608 -12.58835 -12.51109 -12.23400 -12.19342 -12.08879 -12.06496 -11.68228 -11.55840 -11.20198 -11.15467 -10.64579 -10.35845 -10.29569 -9.41175 -9.37567 -8.21990 -6.36943 1.34252 1.36165 1.39854 1.47261 1.91122 2.35250 2.55312 2.73056 3.07259 3.09256 3.48633 3.66587 3.69375 3.80137 3.84289 4.03210 4.12709 4.14895 4.26706 4.29791 4.35903 4.44108 4.46883 4.55014 4.61082 4.63084 4.66719 4.78392 4.84429 4.89581 4.93366 4.98746 5.05215 5.09302 5.11507 5.22117 5.24416 5.39988 5.51203 5.55127 5.72151 5.78141 5.98491 5.98748 6.06353 6.07955 6.70966 6.84038 7.29503 7.55213 8.84817 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.002884 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.850152 B = 9705.600270 C =11101.166300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.495 3.505 15 O -0.589 6.589 16 C -0.121 4.121 17 C -0.066 4.066 18 C -0.102 4.102 19 C 0.043 3.957 20 N -0.545 5.545 21 C -0.004 4.004 22 C 0.265 3.735 23 F -0.218 7.218 24 F -0.216 7.216 25 C 0.068 3.932 26 C -0.114 4.114 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.016 0.984 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.155 0.845 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.921 -11.095 -17.833 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.145 3.855 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.285 3.715 15 O -0.470 6.470 16 C -0.161 4.161 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.084 4.084 20 N -0.270 5.270 21 C -0.133 4.133 22 C 0.211 3.789 23 F -0.199 7.199 24 F -0.197 7.197 25 C -0.059 4.059 26 C -0.152 4.152 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.034 0.966 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.172 0.828 45 H 0.047 0.953 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.104 -10.702 -17.564 24.388 hybrid contribution -0.132 0.484 1.458 1.542 sum 12.972 -10.218 -16.106 23.067 Atomic orbital electron populations 1.24040 0.95631 1.02767 0.98646 1.23351 0.96745 0.98385 1.01580 1.20800 0.92688 0.96148 0.89249 1.48251 1.12046 1.60094 1.12848 1.18626 0.93552 0.92634 0.80734 1.21687 1.40477 0.94514 1.01334 0.92876 1.25851 0.94676 1.03703 0.94869 1.70045 1.42892 1.38188 1.05770 0.85501 0.78542 0.79104 0.77878 1.18474 1.20350 1.20267 1.21440 0.81164 0.77446 0.91423 1.90597 1.53544 1.58391 1.44452 1.21776 0.97967 1.02983 0.93326 1.20877 0.92482 0.96987 0.98124 1.21597 0.95071 1.01069 0.96230 1.22458 0.93687 0.90425 1.01865 1.61907 1.03524 1.27911 1.33609 1.23373 0.90460 1.04371 0.95107 1.22462 0.98183 0.70669 0.87560 1.92869 1.85105 1.54544 1.87417 1.92964 1.94427 1.51793 1.80528 1.21978 0.96656 0.98366 0.88942 1.21649 0.94141 0.97883 1.01541 0.86552 0.88535 0.86559 0.90916 0.87519 0.96554 0.98722 0.92447 0.87586 0.86756 0.92837 0.90817 0.89534 0.88536 0.94978 0.90290 0.86588 0.82823 0.95302 0.90224 0.91918 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 14.32 67.77 0.97 -3.23 16 2 C -0.18 -4.87 9.74 25.64 0.25 -4.62 16 3 C 0.13 4.23 5.65 85.63 0.48 4.71 16 4 N -0.60 -25.80 2.44 -830.53 -2.03 -27.82 16 5 C 0.27 14.65 5.16 85.63 0.44 15.09 16 6 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 10 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 C 0.50 20.46 7.41 87.66 0.65 21.11 16 15 O -0.59 -30.02 13.57 -3.03 -0.04 -30.06 16 16 C -0.12 -3.35 3.73 29.85 0.11 -3.24 16 17 C -0.07 -1.78 1.89 -10.71 -0.02 -1.80 16 18 C -0.10 -2.08 5.38 30.65 0.16 -1.91 16 19 C 0.04 0.86 5.23 86.33 0.45 1.31 16 20 N -0.54 -11.40 4.40 -896.39 -3.95 -15.34 16 21 C 0.00 -0.06 5.38 86.30 0.46 0.40 16 22 C 0.26 3.45 5.59 71.98 0.40 3.85 16 23 F -0.22 -3.70 14.68 44.97 0.66 -3.04 16 24 F -0.22 -4.33 17.15 44.97 0.77 -3.56 16 25 C 0.07 1.67 5.42 86.32 0.47 2.14 16 26 C -0.11 -3.45 5.09 30.65 0.16 -3.29 16 27 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.10 2.38 7.84 -2.91 -0.02 2.35 16 29 H 0.12 2.83 7.83 -2.91 -0.02 2.80 16 30 H 0.07 2.48 7.72 -2.39 -0.02 2.46 16 31 H 0.11 2.65 6.44 -2.39 -0.02 2.64 16 32 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 33 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.11 2.58 7.40 -2.38 -0.02 2.56 16 36 H 0.11 2.51 7.77 -2.39 -0.02 2.49 16 37 H 0.05 1.66 7.95 -2.39 -0.02 1.65 16 38 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.83 5.47 -2.39 -0.01 1.82 16 41 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.91 7.98 -2.39 -0.02 0.90 16 43 H 0.12 1.29 7.77 -2.39 -0.02 1.28 16 44 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 1.82 7.92 -2.39 -0.02 1.81 16 47 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.05 2.06 6.04 -2.39 -0.01 2.05 16 Total: -1.00 -76.56 387.91 4.36 -72.21 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.93 Total: 16.95 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.70 Total: 0.00 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.69 Total: -99.96 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.04 Total: -30.06 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.43 Total: -6.60 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.56 4.36 -72.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602153891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.036 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds