Wall clock time and date at job start Tue Mar 31 2020 16:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47308 * 2 1 4 4 O 1.42897 * 109.47088 * 120.00297 * 2 1 3 5 5 C 1.42903 * 114.00251 * 90.00031 * 4 2 1 6 6 H 1.09002 * 109.46771 * 29.99319 * 5 4 2 7 7 C 1.53000 * 109.47279 * 149.99863 * 5 4 2 8 8 N 1.46497 * 109.47224 * 294.99989 * 7 5 4 9 9 C 1.35313 * 125.86667 * 125.29209 * 8 7 5 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33776 * 106.49865 * 359.59278 * 10 9 8 22 22 N 1.28634 * 108.88055 * 0.26390 * 21 10 9 23 23 C 1.50699 * 109.46596 * 269.99844 * 5 4 2 24 24 C 1.38229 * 120.00529 * 324.72552 * 23 5 4 25 25 C 1.38237 * 120.00514 * 179.78937 * 24 23 5 26 26 C 1.38235 * 119.99446 * 0.44197 * 25 24 23 27 27 C 1.38234 * 120.00264 * 359.81235 * 26 25 24 28 28 C 1.38234 * 120.00020 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47024 * 299.99956 * 1 2 3 30 30 H 1.08997 * 109.46921 * 59.99778 * 1 2 3 31 31 H 1.09000 * 109.47380 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47024 * 240.00043 * 2 1 3 33 33 H 1.08998 * 109.47107 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46885 * 300.00240 * 3 2 1 35 35 H 1.09000 * 109.47042 * 60.00055 * 3 2 1 36 36 H 1.08997 * 109.46709 * 174.99711 * 7 5 4 37 37 H 1.09004 * 109.46796 * 55.00226 * 7 5 4 38 38 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 39 39 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 40 40 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 41 41 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 42 42 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 43 43 H 1.08001 * 120.00200 * 0.02562 * 24 23 5 44 44 H 1.07995 * 120.00671 * 180.27635 * 25 24 23 45 45 H 1.07999 * 120.00120 * 179.83414 * 26 25 24 46 46 H 1.08007 * 120.00316 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00018 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0783 0.9885 6 1 2.4627 -2.2799 -0.0500 7 6 3.3297 -2.5573 1.9026 8 7 4.5901 -1.9365 1.4878 9 6 5.4194 -1.2195 2.2808 10 6 6.4525 -0.8345 1.4957 11 6 7.6425 -0.0088 1.9118 12 7 8.7503 -0.8965 2.2737 13 6 9.9441 -0.3682 2.6871 14 1 10.0704 0.7030 2.7422 15 6 10.9936 -1.2093 3.0305 16 7 10.8415 -2.5147 2.9583 17 14 12.6223 -0.4885 3.5937 18 1 12.4057 0.3309 4.8131 19 1 13.5716 -1.5891 3.8986 20 1 13.1845 0.3655 2.5169 21 7 6.2124 -1.3360 0.2789 22 7 5.1013 -1.9835 0.3075 23 6 0.9286 -2.8087 1.3361 24 6 0.1239 -2.3466 2.3606 25 6 -1.0446 -3.0142 2.6766 26 6 -1.4038 -4.1491 1.9739 27 6 -0.5964 -4.6143 0.9528 28 6 0.5698 -3.9442 0.6340 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.4183 -3.6414 1.8329 37 1 3.1078 -2.2763 2.9322 38 1 5.2832 -0.9969 3.3289 39 1 7.3751 0.6071 2.7705 40 1 7.9465 0.6331 1.0849 41 1 8.6382 -1.8585 2.2205 42 1 11.5750 -3.1024 3.1979 43 1 0.4062 -1.4618 2.9119 44 1 -1.6756 -2.6506 3.4741 45 1 -2.3153 -4.6722 2.2224 46 1 -0.8773 -5.5008 0.4035 47 1 1.2008 -4.3079 -0.1635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603236826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:50 Heat of formation + Delta-G solvation = 90.172164 kcal Electronic energy + Delta-G solvation = -27812.368472 eV Core-core repulsion = 23997.999610 eV Total energy + Delta-G solvation = -3814.368862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.85593 -40.19862 -38.31530 -35.47947 -34.53339 -32.98723 -31.80349 -31.70020 -31.24724 -29.84680 -28.68359 -27.44280 -25.71307 -24.70026 -23.05393 -22.75220 -21.86781 -21.48444 -21.28699 -20.30178 -17.88809 -17.31769 -16.97729 -16.69425 -16.24630 -15.78108 -15.18304 -15.01944 -14.77481 -14.51967 -14.45334 -13.87558 -13.75115 -13.69347 -13.38692 -13.25894 -13.09641 -12.95436 -12.64973 -12.50447 -12.41545 -12.01847 -11.90425 -11.71525 -11.48685 -11.35027 -11.14229 -10.93949 -10.83921 -10.75423 -10.34756 -10.16046 -10.05851 -9.76916 -9.62583 -9.29215 -9.14455 -8.82535 -8.72187 -6.86136 -5.68980 -2.98224 0.88010 1.03232 1.96035 2.51161 3.01829 3.14264 3.37768 3.49674 3.53644 3.55110 4.25477 4.42416 4.46727 4.58837 4.63804 4.66622 4.67613 4.78025 4.79760 4.81732 4.89265 4.96162 5.11182 5.16124 5.25546 5.32354 5.39982 5.47982 5.54323 5.55118 5.56735 5.62108 5.67777 5.71342 5.89036 5.95130 5.99598 6.07537 6.14423 6.15767 6.24483 6.50397 6.59583 6.75075 6.83259 6.87911 6.91540 7.75314 8.48529 8.94554 9.60048 10.16704 10.52801 11.53857 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.002386 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.290523 B =11734.187005 C =12554.262522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 C -0.150 4.150 4 O -0.364 6.364 5 C 0.122 3.878 6 H 0.088 0.912 7 C 0.128 3.872 8 N -0.293 5.293 9 C -0.033 4.033 10 C -0.008 4.008 11 C 0.234 3.766 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.285 1.285 21 N -0.253 5.253 22 N -0.101 5.101 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.186 0.814 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.616 -0.335 -2.567 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 C -0.207 4.207 4 O -0.284 6.284 5 C 0.063 3.937 6 H 0.106 0.894 7 C 0.006 3.994 8 N -0.087 5.087 9 C -0.184 4.184 10 C -0.146 4.146 11 C 0.105 3.895 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.212 1.212 21 N -0.121 5.121 22 N -0.080 5.080 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.203 0.797 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -30.624 -0.650 -3.788 30.865 hybrid contribution 0.709 0.075 1.286 1.470 sum -29.915 -0.575 -2.502 30.025 Atomic orbital electron populations 1.22348 0.95841 1.02507 1.02345 1.22177 0.93528 0.93918 0.87574 1.21854 1.02259 0.94186 1.02378 1.87947 1.86102 1.18141 1.36164 1.21206 0.90408 0.82138 0.99939 0.89391 1.22122 0.78307 0.98735 1.00272 1.47057 1.17385 1.35920 1.08290 1.23361 0.93562 1.01751 0.99746 1.22409 0.98735 1.03546 0.89919 1.18925 0.82944 0.90752 0.96925 1.42308 1.09392 1.05202 1.80158 1.19194 0.89357 0.91925 1.36486 0.90966 1.24757 0.98363 0.95331 1.02553 1.69673 1.32178 1.01515 1.54784 0.86233 0.83660 0.77579 0.78500 1.21258 1.21771 1.21218 1.75066 1.06550 1.09200 1.21265 1.78152 1.06606 1.20321 1.02958 1.20175 0.97001 0.96670 0.97664 1.21029 0.94018 0.99401 0.96196 1.21192 0.97041 0.95886 1.00060 1.21223 0.99619 0.96544 0.95934 1.21135 0.94848 1.00054 0.97926 1.21084 0.97003 0.94888 0.99539 0.91905 0.91909 0.92214 0.92031 0.91763 0.91228 0.91833 0.87181 0.86972 0.79655 0.94554 0.94459 0.78120 0.93509 0.85351 0.85962 0.86098 0.85886 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.06 37.16 0.34 -1.01 16 2 C 0.09 0.81 3.34 -26.73 -0.09 0.72 16 3 C -0.15 -1.40 9.56 37.16 0.36 -1.05 16 4 O -0.36 -3.82 8.77 -35.23 -0.31 -4.13 16 5 C 0.12 1.15 2.40 -27.88 -0.07 1.09 16 6 H 0.09 0.91 7.13 -51.93 -0.37 0.54 16 7 C 0.13 1.28 6.10 -4.04 -0.02 1.26 16 8 N -0.29 -4.28 3.39 -61.26 -0.21 -4.49 16 9 C -0.03 -0.53 11.50 -17.05 -0.20 -0.73 16 10 C -0.01 -0.16 6.61 -82.78 -0.55 -0.71 16 11 C 0.23 5.07 6.82 -5.20 -0.04 5.04 16 12 N -0.73 -19.45 5.59 -61.08 -0.34 -19.79 16 13 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 17 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 N -0.25 -5.28 12.41 33.29 0.41 -4.86 16 22 N -0.10 -1.81 12.82 60.35 0.77 -1.03 16 23 C -0.11 -0.92 3.59 -104.62 -0.38 -1.30 16 24 C -0.09 -0.68 8.72 -39.59 -0.35 -1.03 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 27 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 28 C -0.11 -0.80 9.68 -39.58 -0.38 -1.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 32 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.39 11.12 7.66 -40.82 -0.31 10.81 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.13 0.98 7.64 -52.49 -0.40 0.58 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.62 395.90 -8.08 -42.70 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.27 Total: 6.31 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.81 Total: -10.04 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 1.36 Total: -58.62 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.31 Total: -4.13 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.62 -8.08 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603236826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.873 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds