Wall clock time and date at job start Tue Mar 31 2020 16:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47308 * 2 1 4 4 O 1.42897 * 109.47088 * 120.00297 * 2 1 3 5 5 C 1.42903 * 114.00251 * 90.00031 * 4 2 1 6 6 H 1.09002 * 109.46771 * 29.99319 * 5 4 2 7 7 C 1.53000 * 109.47279 * 149.99863 * 5 4 2 8 8 N 1.46497 * 109.47224 * 294.99989 * 7 5 4 9 9 C 1.35313 * 125.86667 * 125.29209 * 8 7 5 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33776 * 106.49865 * 359.59278 * 10 9 8 22 22 N 1.28634 * 108.88055 * 0.26390 * 21 10 9 23 23 C 1.50699 * 109.46596 * 269.99844 * 5 4 2 24 24 C 1.38229 * 120.00529 * 324.72552 * 23 5 4 25 25 C 1.38237 * 120.00514 * 179.78937 * 24 23 5 26 26 C 1.38235 * 119.99446 * 0.44197 * 25 24 23 27 27 C 1.38234 * 120.00264 * 359.81235 * 26 25 24 28 28 C 1.38234 * 120.00020 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47024 * 299.99956 * 1 2 3 30 30 H 1.08997 * 109.46921 * 59.99778 * 1 2 3 31 31 H 1.09000 * 109.47380 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47024 * 240.00043 * 2 1 3 33 33 H 1.08998 * 109.47107 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46885 * 300.00240 * 3 2 1 35 35 H 1.09000 * 109.47042 * 60.00055 * 3 2 1 36 36 H 1.08997 * 109.46709 * 174.99711 * 7 5 4 37 37 H 1.09004 * 109.46796 * 55.00226 * 7 5 4 38 38 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 39 39 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 40 40 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 41 41 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 42 42 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 43 43 H 1.08001 * 120.00200 * 0.02562 * 24 23 5 44 44 H 1.07995 * 120.00671 * 180.27635 * 25 24 23 45 45 H 1.07999 * 120.00120 * 179.83414 * 26 25 24 46 46 H 1.08007 * 120.00316 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00018 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0783 0.9885 6 1 2.4627 -2.2799 -0.0500 7 6 3.3297 -2.5573 1.9026 8 7 4.5901 -1.9365 1.4878 9 6 5.4194 -1.2195 2.2808 10 6 6.4525 -0.8345 1.4957 11 6 7.6425 -0.0088 1.9118 12 7 8.7503 -0.8965 2.2737 13 6 9.9441 -0.3682 2.6871 14 1 10.0704 0.7030 2.7422 15 6 10.9936 -1.2093 3.0305 16 7 10.8415 -2.5147 2.9583 17 14 12.6223 -0.4885 3.5937 18 1 12.4057 0.3309 4.8131 19 1 13.5716 -1.5891 3.8986 20 1 13.1845 0.3655 2.5169 21 7 6.2124 -1.3360 0.2789 22 7 5.1013 -1.9835 0.3075 23 6 0.9286 -2.8087 1.3361 24 6 0.1239 -2.3466 2.3606 25 6 -1.0446 -3.0142 2.6766 26 6 -1.4038 -4.1491 1.9739 27 6 -0.5964 -4.6143 0.9528 28 6 0.5698 -3.9442 0.6340 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.4183 -3.6414 1.8329 37 1 3.1078 -2.2763 2.9322 38 1 5.2832 -0.9969 3.3289 39 1 7.3751 0.6071 2.7705 40 1 7.9465 0.6331 1.0849 41 1 8.6382 -1.8585 2.2205 42 1 11.5750 -3.1024 3.1979 43 1 0.4062 -1.4618 2.9119 44 1 -1.6756 -2.6506 3.4741 45 1 -2.3153 -4.6722 2.2224 46 1 -0.8773 -5.5008 0.4035 47 1 1.2008 -4.3079 -0.1635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603236826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:48 Heat of formation + Delta-G solvation = 68.680946 kcal Electronic energy + Delta-G solvation = -27813.300401 eV Core-core repulsion = 23997.999610 eV Total energy + Delta-G solvation = -3815.300791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.19517 -40.84693 -38.97316 -36.95967 -35.99572 -34.05309 -33.52143 -32.42832 -31.76866 -31.57619 -29.62153 -28.13364 -27.55686 -25.55935 -24.74391 -23.60089 -22.83568 -22.45027 -22.18618 -21.49790 -19.34136 -18.63492 -18.00067 -17.49776 -17.40545 -16.63771 -16.42212 -16.01334 -15.78136 -15.62816 -15.51659 -15.38478 -15.07500 -14.54470 -14.34593 -14.22832 -14.19309 -13.90275 -13.69996 -13.54695 -13.23249 -13.13275 -13.02442 -12.72847 -12.65593 -12.60816 -12.35806 -12.13852 -12.09794 -11.92147 -11.86501 -11.75053 -11.64378 -11.14285 -10.93616 -10.68842 -10.15558 -9.81751 -9.70883 -9.00992 -7.92033 -5.22527 0.31985 0.50821 0.68760 1.42635 1.48466 1.53705 1.54743 1.60974 2.39411 2.60716 2.82787 3.38425 3.44080 3.55417 3.72393 3.73744 3.90684 3.96849 4.07391 4.08707 4.14418 4.18356 4.22106 4.22333 4.28470 4.32156 4.39890 4.60966 4.63736 4.67303 4.68676 4.81513 4.85974 4.87968 4.89776 5.03228 5.16805 5.17758 5.19853 5.20947 5.27711 5.51532 5.55947 5.59408 5.63847 5.69383 6.08891 6.14917 6.27481 7.34159 7.55337 8.05606 8.32123 9.31840 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.002386 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.290523 B =11734.187005 C =12554.262522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 C -0.146 4.146 4 O -0.377 6.377 5 C 0.130 3.870 6 H 0.074 0.926 7 C 0.117 3.883 8 N -0.277 5.277 9 C -0.015 4.015 10 C -0.038 4.038 11 C 0.237 3.763 12 N -0.739 5.739 13 C -0.244 4.244 14 H 0.084 0.916 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.980 3.020 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.279 1.279 21 N -0.297 5.297 22 N -0.110 5.110 23 C -0.118 4.118 24 C -0.094 4.094 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.127 4.127 28 C -0.117 4.117 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.221 0.779 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.127 0.873 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.623 0.048 -1.345 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.203 4.203 4 O -0.296 6.296 5 C 0.071 3.929 6 H 0.092 0.908 7 C -0.003 4.003 8 N -0.070 5.070 9 C -0.167 4.167 10 C -0.177 4.177 11 C 0.109 3.891 12 N -0.381 5.381 13 C -0.376 4.376 14 H 0.102 0.898 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.809 3.191 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.205 1.205 21 N -0.164 5.164 22 N -0.089 5.089 23 C -0.119 4.119 24 C -0.112 4.112 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.145 4.145 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.238 0.762 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -32.683 -0.236 -2.584 32.785 hybrid contribution 1.151 -0.056 0.886 1.454 sum -31.531 -0.292 -1.698 31.578 Atomic orbital electron populations 1.22242 0.94260 1.02467 1.03003 1.22243 0.94710 0.93611 0.86931 1.21843 1.00516 0.94552 1.03429 1.87913 1.86403 1.18688 1.36598 1.21084 0.90936 0.81941 0.98958 0.90805 1.22635 0.76406 0.99513 1.01755 1.47385 1.18007 1.34472 1.07160 1.23756 0.92188 1.00022 1.00741 1.22220 0.99525 1.05269 0.90655 1.18933 0.82514 0.90417 0.97189 1.42510 1.10370 1.05048 1.80218 1.19670 0.90155 0.92565 1.35196 0.89816 1.25662 1.02163 0.95707 1.03518 1.69854 1.33031 1.02950 1.56585 0.85113 0.78893 0.76688 0.78454 1.19720 1.22351 1.20483 1.75001 1.08111 1.10729 1.22539 1.78052 1.06106 1.20322 1.04409 1.19996 0.96533 0.96978 0.98409 1.21071 0.94438 0.99551 0.96175 1.21435 0.96850 0.95860 1.00437 1.21525 1.00182 0.96398 0.95423 1.21388 0.94480 1.00495 0.98117 1.21219 0.97615 0.94958 0.99762 0.91670 0.90755 0.92557 0.93081 0.94316 0.89605 0.91386 0.85575 0.84450 0.76213 0.92205 0.95453 0.79835 0.94066 0.85472 0.84310 0.84101 0.84300 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.06 71.98 0.65 -1.67 16 2 C 0.08 1.52 3.34 30.59 0.10 1.62 16 3 C -0.15 -2.69 9.56 71.98 0.69 -2.00 16 4 O -0.38 -7.58 8.77 -148.98 -1.31 -8.89 16 5 C 0.13 2.34 2.40 29.85 0.07 2.41 16 6 H 0.07 1.54 7.13 -2.39 -0.02 1.52 16 7 C 0.12 2.16 6.10 86.38 0.53 2.69 16 8 N -0.28 -7.85 3.39 -347.74 -1.18 -9.02 16 9 C -0.02 -0.46 11.50 83.49 0.96 0.50 16 10 C -0.04 -1.51 6.61 41.59 0.28 -1.23 16 11 C 0.24 10.35 6.82 85.63 0.58 10.93 16 12 N -0.74 -40.04 5.59 -347.17 -1.94 -41.98 16 13 C -0.24 -14.06 9.99 84.04 0.84 -13.22 16 14 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 15 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 16 N -0.97 -61.92 13.06 21.65 0.28 -61.63 16 17 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 N -0.30 -12.65 12.41 -48.60 -0.60 -13.26 16 22 N -0.11 -3.95 12.82 37.02 0.47 -3.48 16 23 C -0.12 -1.75 3.59 -19.87 -0.07 -1.82 16 24 C -0.09 -1.28 8.72 22.27 0.19 -1.09 16 25 C -0.13 -1.45 10.05 22.27 0.22 -1.22 16 26 C -0.12 -1.23 10.05 22.27 0.22 -1.01 16 27 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 28 C -0.12 -1.61 9.68 22.27 0.22 -1.40 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.85 6.54 -2.39 -0.02 0.83 16 32 H 0.05 1.03 7.37 -2.39 -0.02 1.02 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.14 1.88 8.07 -2.39 -0.02 1.86 16 38 H 0.22 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.37 21.92 7.66 -92.71 -0.71 21.21 16 42 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.13 1.73 7.64 -2.91 -0.02 1.70 16 44 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 46 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -75.52 395.90 4.19 -71.34 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.25 Total: 29.79 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 6.18 Total: -11.94 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -2.97 Total: -129.37 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.31 Total: -8.89 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.52 4.19 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603236826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.017 kcal (2) G-P(sol) polarization free energy of solvation -75.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds