Wall clock time and date at job start Tue Mar 31 2020 16:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46918 * 2 1 4 4 O 1.42901 * 109.46896 * 120.00124 * 2 1 3 5 5 C 1.42904 * 114.00036 * 88.71468 * 4 2 1 6 6 H 1.09001 * 109.47037 * 325.91902 * 5 4 2 7 7 C 1.52997 * 109.46702 * 205.91945 * 5 4 2 8 8 N 1.46499 * 109.47005 * 64.50314 * 7 5 4 9 9 C 1.35320 * 125.86567 * 124.35598 * 8 7 5 10 10 C 1.35353 * 106.17218 * 180.02562 * 9 8 7 11 11 C 1.50699 * 126.75202 * 180.02562 * 10 9 8 12 12 N 1.46501 * 109.47034 * 95.00327 * 11 10 9 13 13 C 1.36935 * 119.99800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00434 * 359.72762 * 13 12 11 15 15 C 1.38814 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31615 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00240 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47306 * 89.99752 * 17 15 13 19 19 H 1.48498 * 109.47402 * 209.99792 * 17 15 13 20 20 H 1.48504 * 109.47177 * 330.00177 * 17 15 13 21 21 N 1.33770 * 106.49650 * 0.26337 * 10 9 8 22 22 N 1.28633 * 108.88588 * 359.56482 * 21 10 9 23 23 C 1.50699 * 109.46901 * 85.91860 * 5 4 2 24 24 C 1.38240 * 119.99839 * 39.73188 * 23 5 4 25 25 C 1.38235 * 119.99615 * 179.80487 * 24 23 5 26 26 C 1.38238 * 120.00219 * 0.39708 * 25 24 23 27 27 C 1.38239 * 119.99877 * 359.85409 * 26 25 24 28 28 C 1.38233 * 119.99975 * 219.99618 * 23 5 4 29 29 H 1.09006 * 109.46995 * 183.98245 * 1 2 3 30 30 H 1.08997 * 109.47327 * 303.98602 * 1 2 3 31 31 H 1.08999 * 109.46935 * 63.98551 * 1 2 3 32 32 H 1.09004 * 109.46755 * 240.00139 * 2 1 3 33 33 H 1.09000 * 109.46835 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47695 * 299.99526 * 3 2 1 35 35 H 1.08997 * 109.47299 * 60.00083 * 3 2 1 36 36 H 1.08997 * 109.47714 * 304.49957 * 7 5 4 37 37 H 1.09002 * 109.46503 * 184.49814 * 7 5 4 38 38 H 1.08001 * 126.91474 * 359.97438 * 9 8 7 39 39 H 1.09006 * 109.46959 * 335.00327 * 11 10 9 40 40 H 1.08998 * 109.47340 * 215.00669 * 11 10 9 41 41 H 0.96996 * 120.00122 * 0.02562 * 12 11 10 42 42 H 0.97000 * 120.00105 * 179.97438 * 16 15 13 43 43 H 1.07997 * 120.00086 * 359.97438 * 24 23 5 44 44 H 1.08002 * 119.99975 * 180.22424 * 25 24 23 45 45 H 1.07999 * 119.99864 * 179.83323 * 26 25 24 46 46 H 1.07996 * 119.99996 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99967 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1724 -2.0829 0.9972 6 1 1.4054 -2.4604 0.3210 7 6 2.0436 -2.7784 2.3539 8 7 0.6839 -2.5971 2.8683 9 6 -0.1628 -3.5863 3.2368 10 6 -1.2996 -2.9764 3.6463 11 6 -2.5493 -3.6469 4.1561 12 7 -2.5130 -3.6993 5.6197 13 6 -3.5492 -4.2689 6.3102 14 1 -4.3953 -4.6756 5.7762 15 6 -3.5151 -4.3182 7.6971 16 7 -2.4866 -3.8179 8.3482 17 14 -4.9283 -5.0958 8.6391 18 1 -4.6594 -6.5439 8.8288 19 1 -5.0606 -4.4392 9.9644 20 1 -6.1886 -4.9227 7.8729 21 7 -1.0976 -1.6617 3.5046 22 7 0.0892 -1.4697 3.0469 23 6 3.5350 -2.3618 0.4170 24 6 4.6310 -1.6377 0.8477 25 6 5.8816 -1.8964 0.3184 26 6 6.0348 -2.8734 -0.6474 27 6 4.9379 -3.5938 -1.0819 28 6 3.6880 -3.3379 -0.5497 29 1 -0.3633 -1.0252 0.0714 30 1 -0.3634 0.5744 0.8521 31 1 -0.3633 0.4507 -0.9235 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.7577 -2.3447 3.0539 37 1 2.2492 -3.8425 2.2375 38 1 0.0295 -4.6487 3.2089 39 1 -2.6065 -4.6598 3.7575 40 1 -3.4228 -3.0799 3.8343 41 1 -1.7550 -3.3306 6.0996 42 1 -2.4629 -3.8519 9.3173 43 1 4.5107 -0.8719 1.5997 44 1 6.7385 -1.3332 0.6575 45 1 7.0114 -3.0735 -1.0629 46 1 5.0575 -4.3568 -1.8367 47 1 2.8310 -3.9009 -0.8890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603236848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:54 Heat of formation + Delta-G solvation = 91.779623 kcal Electronic energy + Delta-G solvation = -27825.975904 eV Core-core repulsion = 24011.676747 eV Total energy + Delta-G solvation = -3814.299157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.81907 -40.13352 -38.27152 -35.43134 -34.52685 -32.96177 -31.76891 -31.60454 -31.22966 -29.81714 -28.71330 -27.33321 -25.70407 -24.66127 -23.02732 -22.75389 -21.94445 -21.42627 -21.04801 -20.29498 -17.72254 -17.36761 -17.26160 -16.74873 -16.01121 -15.64348 -15.15801 -15.03892 -14.61173 -14.54418 -14.37458 -13.91662 -13.78203 -13.73357 -13.39596 -13.12682 -13.04496 -12.82204 -12.55442 -12.40499 -12.30197 -12.00461 -11.82670 -11.77635 -11.43368 -11.40106 -11.08477 -10.82833 -10.80051 -10.75157 -10.31785 -10.05341 -9.93523 -9.75854 -9.60653 -9.30787 -9.19738 -8.83198 -8.69893 -6.86200 -5.69143 -2.98457 0.86120 1.01505 1.98029 2.52849 3.05385 3.26502 3.38201 3.48582 3.53586 3.55911 4.20827 4.33002 4.45513 4.61933 4.62770 4.67392 4.71471 4.76010 4.83359 4.91196 4.92885 5.02852 5.10072 5.16227 5.28544 5.39927 5.45898 5.53218 5.55608 5.58393 5.66580 5.69469 5.71818 5.73063 5.97030 6.02104 6.04790 6.12987 6.15499 6.22734 6.24399 6.50731 6.58182 6.75019 6.84573 6.91735 7.01659 7.75363 8.48267 9.02173 9.59866 10.16661 10.52682 11.53708 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.002404 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.216783 B =11643.718236 C =12457.705704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 C -0.146 4.146 4 O -0.348 6.348 5 C 0.124 3.876 6 H 0.075 0.925 7 C 0.128 3.872 8 N -0.299 5.299 9 C -0.054 4.054 10 C -0.006 4.006 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.238 4.238 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 N -0.262 5.262 22 N -0.064 5.064 23 C -0.119 4.119 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.186 0.814 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.032 2.862 -23.987 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.030 3.970 3 C -0.204 4.204 4 O -0.266 6.266 5 C 0.065 3.935 6 H 0.093 0.907 7 C 0.006 3.994 8 N -0.094 5.094 9 C -0.204 4.204 10 C -0.143 4.143 11 C 0.104 3.896 12 N -0.370 5.370 13 C -0.369 4.369 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 N -0.130 5.130 22 N -0.043 5.043 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.203 0.797 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.030 4.420 -23.889 30.861 hybrid contribution -0.369 -1.743 0.561 1.868 sum 18.662 2.677 -23.328 29.993 Atomic orbital electron populations 1.22252 0.95493 1.02449 1.02543 1.22058 0.93864 0.93648 0.87466 1.21820 1.01363 0.94467 1.02719 1.88107 1.85947 1.16861 1.35732 1.21051 0.93201 0.84261 0.95006 0.90729 1.22091 0.79587 1.02419 0.95295 1.47176 1.13235 1.05511 1.43463 1.23393 0.91844 0.96589 1.08547 1.22417 0.98161 0.90324 1.03430 1.18920 0.89029 0.95315 0.86308 1.42312 1.24219 1.71734 0.98774 1.19234 0.98160 1.30439 0.89095 0.90936 1.24759 0.98117 1.01752 0.96401 1.69684 1.30390 1.50932 1.07061 0.86159 0.81741 0.78636 0.79465 1.21779 1.21821 1.20694 1.75141 1.07320 1.16315 1.14255 1.78442 1.02039 1.07313 1.16555 1.20240 0.95434 0.97975 0.98322 1.21077 0.91692 0.98591 0.99211 1.21218 0.97419 0.98186 0.97253 1.21235 0.98818 0.96038 0.97157 1.21130 0.92642 1.00008 1.00279 1.21063 0.97817 0.97385 0.96306 0.93091 0.90794 0.92250 0.92829 0.92278 0.91465 0.91346 0.87617 0.86567 0.79731 0.94684 0.94489 0.78090 0.93549 0.85181 0.85860 0.86045 0.85902 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.49 37.16 0.35 -1.52 16 2 C 0.09 0.86 3.11 -26.73 -0.08 0.78 16 3 C -0.15 -1.27 9.56 37.15 0.36 -0.92 16 4 O -0.35 -3.93 7.98 -35.23 -0.28 -4.21 16 5 C 0.12 1.17 2.32 -27.89 -0.06 1.10 16 6 H 0.07 0.70 7.33 -51.93 -0.38 0.32 16 7 C 0.13 1.28 6.15 -4.04 -0.02 1.26 16 8 N -0.30 -4.35 3.44 -61.26 -0.21 -4.57 16 9 C -0.05 -0.84 11.50 -17.04 -0.20 -1.04 16 10 C -0.01 -0.12 6.61 -82.78 -0.55 -0.66 16 11 C 0.23 5.05 6.82 -5.19 -0.04 5.01 16 12 N -0.73 -19.46 5.59 -61.08 -0.34 -19.80 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -29.23 13.06 55.49 0.72 -28.50 16 17 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 N -0.26 -5.47 12.41 33.29 0.41 -5.05 16 22 N -0.06 -1.15 12.09 60.35 0.73 -0.42 16 23 C -0.12 -0.96 4.72 -104.62 -0.49 -1.45 16 24 C -0.09 -0.71 9.36 -39.58 -0.37 -1.08 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 26 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 27 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 28 C -0.11 -0.76 9.67 -39.58 -0.38 -1.15 16 29 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.12 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.19 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.39 11.17 7.66 -40.82 -0.31 10.86 16 42 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.13 1.07 7.77 -52.49 -0.41 0.67 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.12 0.70 8.04 -52.49 -0.42 0.28 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -35.09 398.21 -8.28 -43.37 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.36 Total: 6.12 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.93 Total: -10.77 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 1.31 Total: -58.34 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.28 Total: -4.21 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.09 -8.28 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603236848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.154 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds