Wall clock time and date at job start Tue Mar 31 2020 16:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46918 * 2 1 4 4 O 1.42901 * 109.46896 * 120.00124 * 2 1 3 5 5 C 1.42904 * 114.00036 * 88.71468 * 4 2 1 6 6 H 1.09001 * 109.47037 * 325.91902 * 5 4 2 7 7 C 1.52997 * 109.46702 * 205.91945 * 5 4 2 8 8 N 1.46499 * 109.47005 * 64.50314 * 7 5 4 9 9 C 1.35320 * 125.86567 * 124.35598 * 8 7 5 10 10 C 1.35353 * 106.17218 * 180.02562 * 9 8 7 11 11 C 1.50699 * 126.75202 * 180.02562 * 10 9 8 12 12 N 1.46501 * 109.47034 * 95.00327 * 11 10 9 13 13 C 1.36935 * 119.99800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00434 * 359.72762 * 13 12 11 15 15 C 1.38814 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31615 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00240 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47306 * 89.99752 * 17 15 13 19 19 H 1.48498 * 109.47402 * 209.99792 * 17 15 13 20 20 H 1.48504 * 109.47177 * 330.00177 * 17 15 13 21 21 N 1.33770 * 106.49650 * 0.26337 * 10 9 8 22 22 N 1.28633 * 108.88588 * 359.56482 * 21 10 9 23 23 C 1.50699 * 109.46901 * 85.91860 * 5 4 2 24 24 C 1.38240 * 119.99839 * 39.73188 * 23 5 4 25 25 C 1.38235 * 119.99615 * 179.80487 * 24 23 5 26 26 C 1.38238 * 120.00219 * 0.39708 * 25 24 23 27 27 C 1.38239 * 119.99877 * 359.85409 * 26 25 24 28 28 C 1.38233 * 119.99975 * 219.99618 * 23 5 4 29 29 H 1.09006 * 109.46995 * 183.98245 * 1 2 3 30 30 H 1.08997 * 109.47327 * 303.98602 * 1 2 3 31 31 H 1.08999 * 109.46935 * 63.98551 * 1 2 3 32 32 H 1.09004 * 109.46755 * 240.00139 * 2 1 3 33 33 H 1.09000 * 109.46835 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47695 * 299.99526 * 3 2 1 35 35 H 1.08997 * 109.47299 * 60.00083 * 3 2 1 36 36 H 1.08997 * 109.47714 * 304.49957 * 7 5 4 37 37 H 1.09002 * 109.46503 * 184.49814 * 7 5 4 38 38 H 1.08001 * 126.91474 * 359.97438 * 9 8 7 39 39 H 1.09006 * 109.46959 * 335.00327 * 11 10 9 40 40 H 1.08998 * 109.47340 * 215.00669 * 11 10 9 41 41 H 0.96996 * 120.00122 * 0.02562 * 12 11 10 42 42 H 0.97000 * 120.00105 * 179.97438 * 16 15 13 43 43 H 1.07997 * 120.00086 * 359.97438 * 24 23 5 44 44 H 1.08002 * 119.99975 * 180.22424 * 25 24 23 45 45 H 1.07999 * 119.99864 * 179.83323 * 26 25 24 46 46 H 1.07996 * 119.99996 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99967 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1724 -2.0829 0.9972 6 1 1.4054 -2.4604 0.3210 7 6 2.0436 -2.7784 2.3539 8 7 0.6839 -2.5971 2.8683 9 6 -0.1628 -3.5863 3.2368 10 6 -1.2996 -2.9764 3.6463 11 6 -2.5493 -3.6469 4.1561 12 7 -2.5130 -3.6993 5.6197 13 6 -3.5492 -4.2689 6.3102 14 1 -4.3953 -4.6756 5.7762 15 6 -3.5151 -4.3182 7.6971 16 7 -2.4866 -3.8179 8.3482 17 14 -4.9283 -5.0958 8.6391 18 1 -4.6594 -6.5439 8.8288 19 1 -5.0606 -4.4392 9.9644 20 1 -6.1886 -4.9227 7.8729 21 7 -1.0976 -1.6617 3.5046 22 7 0.0892 -1.4697 3.0469 23 6 3.5350 -2.3618 0.4170 24 6 4.6310 -1.6377 0.8477 25 6 5.8816 -1.8964 0.3184 26 6 6.0348 -2.8734 -0.6474 27 6 4.9379 -3.5938 -1.0819 28 6 3.6880 -3.3379 -0.5497 29 1 -0.3633 -1.0252 0.0714 30 1 -0.3634 0.5744 0.8521 31 1 -0.3633 0.4507 -0.9235 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.7577 -2.3447 3.0539 37 1 2.2492 -3.8425 2.2375 38 1 0.0295 -4.6487 3.2089 39 1 -2.6065 -4.6598 3.7575 40 1 -3.4228 -3.0799 3.8343 41 1 -1.7550 -3.3306 6.0996 42 1 -2.4629 -3.8519 9.3173 43 1 4.5107 -0.8719 1.5997 44 1 6.7385 -1.3332 0.6575 45 1 7.0114 -3.0735 -1.0629 46 1 5.0575 -4.3568 -1.8367 47 1 2.8310 -3.9009 -0.8890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603236848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:52 Heat of formation + Delta-G solvation = 69.865136 kcal Electronic energy + Delta-G solvation = -27826.926188 eV Core-core repulsion = 24011.676747 eV Total energy + Delta-G solvation = -3815.249441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.13695 -40.76991 -38.95193 -36.93002 -35.96215 -34.04070 -33.50468 -32.32224 -31.74876 -31.53478 -29.63196 -28.14268 -27.53548 -25.49434 -24.74010 -23.55462 -22.80374 -22.57886 -21.89592 -21.47626 -19.32838 -18.49767 -18.20153 -17.70956 -17.08934 -16.61628 -16.28725 -16.02614 -15.76542 -15.61913 -15.52138 -15.20106 -15.06185 -14.60644 -14.42830 -14.25229 -14.10450 -13.82193 -13.58329 -13.45279 -13.14096 -13.10144 -13.00292 -12.76738 -12.69346 -12.56896 -12.35304 -12.08368 -12.05141 -11.95571 -11.86778 -11.70975 -11.58667 -11.01279 -10.94526 -10.58761 -10.10910 -9.82005 -9.75000 -9.00943 -7.92380 -5.22825 0.32031 0.50385 0.73310 1.46258 1.49647 1.52662 1.58399 1.62575 2.54385 2.60378 2.83042 3.37576 3.41065 3.55091 3.72726 3.79940 3.90750 4.03785 4.08255 4.09775 4.15951 4.18397 4.23299 4.25459 4.31251 4.32540 4.46735 4.62119 4.62808 4.67942 4.71573 4.83992 4.87252 4.90952 4.93349 5.03693 5.16789 5.20910 5.23738 5.28226 5.30447 5.51393 5.55211 5.60793 5.63585 5.74387 6.08768 6.27020 6.27285 7.33802 7.65327 8.05758 8.31890 9.31742 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.002404 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.216783 B =11643.718236 C =12457.705704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 C -0.143 4.143 4 O -0.370 6.370 5 C 0.129 3.871 6 H 0.075 0.925 7 C 0.117 3.883 8 N -0.285 5.285 9 C -0.029 4.029 10 C -0.040 4.040 11 C 0.237 3.763 12 N -0.739 5.739 13 C -0.243 4.243 14 H 0.084 0.916 15 C -0.080 4.080 16 N -0.974 5.974 17 Si 0.980 3.020 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.267 1.267 21 N -0.307 5.307 22 N -0.077 5.077 23 C -0.123 4.123 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.111 4.111 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.154 0.846 38 H 0.226 0.774 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.120 0.880 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.177 1.025 -26.007 32.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 C -0.200 4.200 4 O -0.289 6.289 5 C 0.070 3.930 6 H 0.093 0.907 7 C -0.002 4.002 8 N -0.079 5.079 9 C -0.180 4.180 10 C -0.178 4.178 11 C 0.109 3.891 12 N -0.382 5.382 13 C -0.374 4.374 14 H 0.102 0.898 15 C -0.272 4.272 16 N -0.625 5.625 17 Si 0.809 3.191 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.192 1.192 21 N -0.175 5.175 22 N -0.057 5.057 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.172 0.828 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.201 0.799 42 H 0.059 0.941 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.180 2.590 -25.971 32.991 hybrid contribution -0.603 -1.163 1.051 1.680 sum 19.577 1.427 -24.920 31.722 Atomic orbital electron populations 1.22198 0.96610 1.01037 1.02235 1.22112 0.92858 0.94355 0.87620 1.21806 1.01674 0.93760 1.02750 1.88088 1.86056 1.18051 1.36671 1.21035 0.94167 0.83319 0.94497 0.90723 1.22626 0.76992 1.05009 0.95620 1.47519 1.14296 1.04452 1.41640 1.23841 0.90281 0.98164 1.05705 1.22245 0.99060 0.90474 1.06011 1.18937 0.89991 0.96596 0.83552 1.42528 1.23267 1.71459 1.00932 1.19707 0.98686 1.29353 0.89654 0.89774 1.25666 1.00901 1.03065 0.97522 1.69864 1.32685 1.53029 1.06900 0.85039 0.78944 0.77695 0.77456 1.20872 1.22571 1.19219 1.75075 1.08930 1.17549 1.15898 1.78365 1.01518 1.08709 1.17071 1.20073 0.94398 0.98824 0.99113 1.21091 0.92397 0.98800 0.99566 1.21421 0.97395 0.98576 0.97406 1.21540 0.99891 0.95439 0.96636 1.21430 0.92310 1.00245 1.00405 1.21256 0.98730 0.97087 0.95873 0.94600 0.93589 0.90358 0.91473 0.91707 0.89701 0.93036 0.87475 0.82798 0.75730 0.92069 0.95620 0.79891 0.94096 0.86190 0.84649 0.84076 0.83907 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.49 71.98 0.68 -2.96 16 2 C 0.09 1.70 3.11 30.59 0.10 1.79 16 3 C -0.14 -2.42 9.56 71.98 0.69 -1.73 16 4 O -0.37 -8.27 7.98 -148.98 -1.19 -9.46 16 5 C 0.13 2.25 2.32 29.85 0.07 2.32 16 6 H 0.07 1.29 7.33 -2.39 -0.02 1.28 16 7 C 0.12 2.13 6.15 86.38 0.53 2.66 16 8 N -0.28 -7.98 3.44 -347.73 -1.19 -9.18 16 9 C -0.03 -0.85 11.50 83.49 0.96 0.11 16 10 C -0.04 -1.56 6.61 41.60 0.28 -1.29 16 11 C 0.24 10.24 6.82 85.63 0.58 10.82 16 12 N -0.74 -40.07 5.59 -347.17 -1.94 -42.01 16 13 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 14 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 15 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 16 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 17 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 N -0.31 -13.15 12.41 -48.60 -0.60 -13.76 16 22 N -0.08 -2.82 12.09 37.02 0.45 -2.38 16 23 C -0.12 -1.77 4.72 -19.87 -0.09 -1.86 16 24 C -0.10 -1.50 9.36 22.27 0.21 -1.29 16 25 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 26 C -0.12 -1.20 10.05 22.27 0.22 -0.98 16 27 C -0.13 -1.26 10.05 22.27 0.22 -1.04 16 28 C -0.11 -1.29 9.67 22.27 0.22 -1.07 16 29 H 0.03 0.88 7.75 -2.38 -0.02 0.87 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.11 7.70 -2.39 -0.02 1.10 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.15 1.62 8.07 -2.39 -0.02 1.60 16 38 H 0.23 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.37 22.00 7.66 -92.71 -0.71 21.29 16 42 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.12 1.97 7.77 -2.91 -0.02 1.95 16 44 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 46 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 47 H 0.14 1.14 8.04 -2.91 -0.02 1.12 16 Total: -1.00 -77.85 398.21 4.27 -73.58 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.25 Total: 29.22 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 6.19 Total: -13.25 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -3.01 Total: -129.26 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.19 Total: -9.46 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.85 4.27 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603236848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.441 kcal (2) G-P(sol) polarization free energy of solvation -77.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds