Wall clock time and date at job start Tue Mar 31 2020 15:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 H 1.09008 * 109.46557 * 305.30954 * 3 2 1 5 5 O 1.42895 * 109.47071 * 65.30662 * 3 2 1 6 6 C 1.42904 * 114.00103 * 208.17207 * 5 3 2 7 7 C 1.52994 * 109.47389 * 180.47220 * 6 5 3 8 8 N 1.46501 * 109.47293 * 179.97438 * 7 6 5 9 9 C 1.35311 * 125.86587 * 125.32565 * 8 7 6 10 10 C 1.35352 * 106.17559 * 180.11947 * 9 8 7 11 11 C 1.50697 * 126.75649 * 179.85330 * 10 9 8 12 12 N 1.46496 * 109.47317 * 94.70857 * 11 10 9 13 13 C 1.36936 * 120.00096 * 179.72300 * 12 11 10 14 14 H 1.07993 * 120.00001 * 0.28490 * 13 12 11 15 15 C 1.38816 * 120.00074 * 180.27696 * 13 12 11 16 16 N 1.31623 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47215 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47190 * 120.00263 * 17 15 13 20 20 H 1.48494 * 109.47340 * 239.99943 * 17 15 13 21 21 N 1.33776 * 106.49297 * 359.59314 * 10 9 8 22 22 N 1.28635 * 108.88594 * 0.25869 * 21 10 9 23 23 C 1.50702 * 109.47087 * 185.31148 * 3 2 1 24 24 C 1.38228 * 119.99835 * 279.72393 * 23 3 2 25 25 C 1.38242 * 119.99910 * 179.78853 * 24 23 3 26 26 C 1.38227 * 119.99508 * 0.44205 * 25 24 23 27 27 C 1.38237 * 120.00473 * 359.80948 * 26 25 24 28 28 C 1.38227 * 119.99641 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.47002 * 294.80566 * 1 2 3 30 30 H 1.08994 * 109.46972 * 54.80648 * 1 2 3 31 31 H 1.09002 * 109.47547 * 174.80803 * 1 2 3 32 32 H 1.09005 * 109.46853 * 239.99793 * 2 1 3 33 33 H 1.09002 * 109.47163 * 119.99905 * 2 1 3 34 34 H 1.09002 * 109.47025 * 60.46979 * 6 5 3 35 35 H 1.09008 * 109.46928 * 300.47504 * 6 5 3 36 36 H 1.09002 * 109.47234 * 59.99887 * 7 6 5 37 37 H 1.09006 * 109.46817 * 300.00196 * 7 6 5 38 38 H 1.08002 * 126.91570 * 359.97410 * 9 8 7 39 39 H 1.09007 * 109.46815 * 334.71279 * 11 10 9 40 40 H 1.08999 * 109.47018 * 214.71174 * 11 10 9 41 41 H 0.97008 * 120.00092 * 0.02562 * 12 11 10 42 42 H 0.97001 * 119.99741 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.00073 * 359.97438 * 24 23 3 44 44 H 1.07995 * 119.99694 * 180.27352 * 25 24 23 45 45 H 1.08007 * 119.99390 * 179.83169 * 26 25 24 46 46 H 1.08005 * 119.99761 * 179.97438 * 27 26 25 47 47 H 1.08012 * 119.99514 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6011 1.9830 -0.8387 5 8 1.6683 2.0791 1.2240 6 6 1.5018 3.4944 1.1159 7 6 1.1179 4.0685 2.4811 8 7 0.9479 5.5194 2.3704 9 6 -0.1523 6.2186 2.7329 10 6 0.1181 7.5162 2.4584 11 6 -0.7951 8.6942 2.6806 12 7 -0.4962 9.3060 3.9777 13 6 -1.2004 10.4035 4.3956 14 1 -1.9792 10.8153 3.7710 15 6 -0.9134 10.9867 5.6222 16 7 0.0361 10.4849 6.3833 17 14 -1.8745 12.4834 6.1925 18 1 -2.8798 12.8482 5.1623 19 1 -2.5657 12.1708 7.4692 20 1 -0.9425 13.6206 6.3999 21 7 1.3577 7.5478 1.9565 22 7 1.8218 6.3487 1.9174 23 6 3.5414 1.4444 -0.1315 24 6 4.3325 1.2068 0.9768 25 6 5.7096 1.2043 0.8553 26 6 6.2954 1.4484 -0.3727 27 6 5.5043 1.6912 -1.4800 28 6 4.1273 1.6893 -1.3593 29 1 -0.3633 0.4312 0.9329 30 1 -0.3633 0.5923 -0.8398 31 1 -0.3634 -1.0234 -0.0930 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7142 3.7136 0.3950 35 1 2.4362 3.9456 0.7817 36 1 1.9055 3.8493 3.2020 37 1 0.1836 3.6172 2.8152 38 1 -1.0639 5.8212 3.1542 39 1 -1.8318 8.3577 2.6678 40 1 -0.6412 9.4275 1.8889 41 1 0.2035 8.9362 4.5387 42 1 0.2364 10.8921 7.2406 43 1 3.8748 1.0202 1.9370 44 1 6.3276 1.0142 1.7203 45 1 7.3713 1.4491 -0.4671 46 1 5.9621 1.8823 -2.4394 47 1 3.5092 1.8794 -2.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603254477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:31 Heat of formation + Delta-G solvation = 87.067004 kcal Electronic energy + Delta-G solvation = -26766.816766 eV Core-core repulsion = 22952.313255 eV Total energy + Delta-G solvation = -3814.503512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.95326 -40.13116 -38.25737 -35.57996 -34.62339 -33.72133 -31.81571 -31.41342 -31.20282 -30.06872 -29.48453 -26.36371 -25.76037 -24.26025 -22.94932 -22.77621 -22.57683 -21.53715 -21.12163 -20.36972 -17.81338 -17.38357 -17.23945 -16.59444 -16.45601 -15.99121 -15.20782 -15.09715 -14.90246 -14.59396 -14.54740 -14.21556 -14.10920 -13.72422 -13.66400 -13.28922 -13.07333 -12.96660 -12.62883 -12.53661 -12.29619 -12.05267 -11.88310 -11.64117 -11.43446 -11.36169 -11.21572 -11.08243 -10.87220 -10.80903 -10.43213 -10.08252 -10.04218 -9.87158 -9.70170 -9.23793 -9.10793 -8.87122 -8.82731 -6.89426 -5.71856 -3.01474 0.96922 1.08790 1.82096 2.22883 2.92437 3.33341 3.45929 3.47075 3.52432 3.55008 4.19588 4.25631 4.42735 4.52328 4.62006 4.64957 4.70469 4.71068 4.78609 4.81481 4.84908 4.88081 5.08370 5.14731 5.22095 5.23664 5.31541 5.35023 5.39596 5.49919 5.53261 5.63505 5.65494 5.67091 5.71195 5.87239 5.88821 6.11765 6.16246 6.19826 6.20786 6.42476 6.66302 6.66889 6.68248 6.78615 6.82697 7.73682 8.45368 8.84722 9.57142 10.13102 10.48975 11.51000 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.001936 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.823329 B =14459.611612 C =15167.534519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.135 3.865 4 H 0.071 0.929 5 O -0.370 6.370 6 C 0.053 3.947 7 C 0.124 3.876 8 N -0.299 5.299 9 C -0.040 4.040 10 C -0.006 4.006 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.074 0.926 15 C -0.015 4.015 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.292 1.292 21 N -0.252 5.252 22 N -0.096 5.096 23 C -0.118 4.118 24 C -0.092 4.092 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.190 0.810 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -27.730 -15.782 32.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.089 0.911 5 O -0.288 6.288 6 C -0.024 4.024 7 C 0.001 3.999 8 N -0.094 5.094 9 C -0.190 4.190 10 C -0.143 4.143 11 C 0.104 3.896 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.092 0.908 15 C -0.211 4.211 16 N -0.580 5.580 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 N -0.120 5.120 22 N -0.075 5.075 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.207 0.793 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.044 -27.571 -16.204 32.747 hybrid contribution -1.087 0.591 0.878 1.517 sum 5.957 -26.980 -15.327 31.596 Atomic orbital electron populations 1.21754 0.94891 1.01795 1.02469 1.21607 0.96607 0.93710 1.03181 1.21033 0.89666 0.94527 0.87016 0.91149 1.87813 1.89567 1.18724 1.32742 1.22612 1.01787 0.81938 0.96094 1.21638 1.05627 0.73953 0.98635 1.47062 1.11328 1.08505 1.42508 1.23439 0.94602 0.92815 1.08177 1.22491 0.94257 0.95217 1.02382 1.18948 0.92295 0.87963 0.90421 1.42328 1.44059 1.34283 1.16435 1.19279 1.12893 1.04054 1.00728 0.90815 1.24774 0.99144 0.99753 0.97385 1.69698 1.33359 1.42570 1.12407 0.86077 0.79000 0.82598 0.78269 1.20465 1.21935 1.21868 1.75106 1.09248 1.11178 1.16418 1.78256 1.16472 0.94537 1.18269 1.20385 0.96040 1.01305 0.94076 1.20998 0.93325 0.98163 0.98550 1.21213 0.94986 1.00153 0.97668 1.21210 0.99935 0.99374 0.93022 1.21127 0.93682 1.00328 0.98847 1.21018 0.95114 0.99940 0.96887 0.91811 0.92875 0.92468 0.90455 0.90723 0.92372 0.91214 0.87694 0.86945 0.79285 0.94434 0.94323 0.78098 0.93571 0.85552 0.85958 0.86090 0.86005 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.76 37.16 0.36 -0.50 16 2 C -0.11 -0.69 5.62 -26.73 -0.15 -0.84 16 3 C 0.14 1.00 2.30 -27.88 -0.06 0.94 16 4 H 0.07 0.49 7.68 -51.92 -0.40 0.09 16 5 O -0.37 -3.13 8.95 -35.23 -0.32 -3.45 16 6 C 0.05 0.49 5.85 37.15 0.22 0.71 16 7 C 0.12 1.19 6.82 -4.04 -0.03 1.17 16 8 N -0.30 -4.28 3.44 -61.26 -0.21 -4.49 16 9 C -0.04 -0.61 11.50 -17.05 -0.20 -0.81 16 10 C -0.01 -0.11 6.62 -82.78 -0.55 -0.66 16 11 C 0.23 4.96 6.82 -5.20 -0.04 4.92 16 12 N -0.73 -19.26 5.59 -61.09 -0.34 -19.60 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 17 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 N -0.25 -5.23 12.41 33.29 0.41 -4.82 16 22 N -0.10 -1.73 12.91 60.35 0.78 -0.95 16 23 C -0.12 -0.98 4.88 -104.63 -0.51 -1.49 16 24 C -0.09 -0.80 9.36 -39.58 -0.37 -1.17 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 27 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 28 C -0.11 -0.88 9.67 -39.59 -0.38 -1.26 16 29 H 0.06 0.41 7.97 -51.93 -0.41 0.00 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.07 0.76 8.09 -51.92 -0.42 0.34 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.39 11.04 7.66 -40.82 -0.31 10.73 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.13 1.03 7.77 -52.49 -0.41 0.62 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.12 0.75 8.04 -52.48 -0.42 0.33 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -34.83 400.80 -8.49 -43.32 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.41 Total: 5.08 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.14 Total: -10.51 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 1.36 Total: -58.17 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -0.32 Total: -3.45 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.83 -8.49 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603254477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.384 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds