Wall clock time and date at job start Tue Mar 31 2020 15:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 H 1.09008 * 109.46557 * 305.30954 * 3 2 1 5 5 O 1.42895 * 109.47071 * 65.30662 * 3 2 1 6 6 C 1.42904 * 114.00103 * 208.17207 * 5 3 2 7 7 C 1.52994 * 109.47389 * 180.47220 * 6 5 3 8 8 N 1.46501 * 109.47293 * 179.97438 * 7 6 5 9 9 C 1.35311 * 125.86587 * 125.32565 * 8 7 6 10 10 C 1.35352 * 106.17559 * 180.11947 * 9 8 7 11 11 C 1.50697 * 126.75649 * 179.85330 * 10 9 8 12 12 N 1.46496 * 109.47317 * 94.70857 * 11 10 9 13 13 C 1.36936 * 120.00096 * 179.72300 * 12 11 10 14 14 H 1.07993 * 120.00001 * 0.28490 * 13 12 11 15 15 C 1.38816 * 120.00074 * 180.27696 * 13 12 11 16 16 N 1.31623 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47215 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47190 * 120.00263 * 17 15 13 20 20 H 1.48494 * 109.47340 * 239.99943 * 17 15 13 21 21 N 1.33776 * 106.49297 * 359.59314 * 10 9 8 22 22 N 1.28635 * 108.88594 * 0.25869 * 21 10 9 23 23 C 1.50702 * 109.47087 * 185.31148 * 3 2 1 24 24 C 1.38228 * 119.99835 * 279.72393 * 23 3 2 25 25 C 1.38242 * 119.99910 * 179.78853 * 24 23 3 26 26 C 1.38227 * 119.99508 * 0.44205 * 25 24 23 27 27 C 1.38237 * 120.00473 * 359.80948 * 26 25 24 28 28 C 1.38227 * 119.99641 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.47002 * 294.80566 * 1 2 3 30 30 H 1.08994 * 109.46972 * 54.80648 * 1 2 3 31 31 H 1.09002 * 109.47547 * 174.80803 * 1 2 3 32 32 H 1.09005 * 109.46853 * 239.99793 * 2 1 3 33 33 H 1.09002 * 109.47163 * 119.99905 * 2 1 3 34 34 H 1.09002 * 109.47025 * 60.46979 * 6 5 3 35 35 H 1.09008 * 109.46928 * 300.47504 * 6 5 3 36 36 H 1.09002 * 109.47234 * 59.99887 * 7 6 5 37 37 H 1.09006 * 109.46817 * 300.00196 * 7 6 5 38 38 H 1.08002 * 126.91570 * 359.97410 * 9 8 7 39 39 H 1.09007 * 109.46815 * 334.71279 * 11 10 9 40 40 H 1.08999 * 109.47018 * 214.71174 * 11 10 9 41 41 H 0.97008 * 120.00092 * 0.02562 * 12 11 10 42 42 H 0.97001 * 119.99741 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.00073 * 359.97438 * 24 23 3 44 44 H 1.07995 * 119.99694 * 180.27352 * 25 24 23 45 45 H 1.08007 * 119.99390 * 179.83169 * 26 25 24 46 46 H 1.08005 * 119.99761 * 179.97438 * 27 26 25 47 47 H 1.08012 * 119.99514 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6011 1.9830 -0.8387 5 8 1.6683 2.0791 1.2240 6 6 1.5018 3.4944 1.1159 7 6 1.1179 4.0685 2.4811 8 7 0.9479 5.5194 2.3704 9 6 -0.1523 6.2186 2.7329 10 6 0.1181 7.5162 2.4584 11 6 -0.7951 8.6942 2.6806 12 7 -0.4962 9.3060 3.9777 13 6 -1.2004 10.4035 4.3956 14 1 -1.9792 10.8153 3.7710 15 6 -0.9134 10.9867 5.6222 16 7 0.0361 10.4849 6.3833 17 14 -1.8745 12.4834 6.1925 18 1 -2.8798 12.8482 5.1623 19 1 -2.5657 12.1708 7.4692 20 1 -0.9425 13.6206 6.3999 21 7 1.3577 7.5478 1.9565 22 7 1.8218 6.3487 1.9174 23 6 3.5414 1.4444 -0.1315 24 6 4.3325 1.2068 0.9768 25 6 5.7096 1.2043 0.8553 26 6 6.2954 1.4484 -0.3727 27 6 5.5043 1.6912 -1.4800 28 6 4.1273 1.6893 -1.3593 29 1 -0.3633 0.4312 0.9329 30 1 -0.3633 0.5923 -0.8398 31 1 -0.3634 -1.0234 -0.0930 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7142 3.7136 0.3950 35 1 2.4362 3.9456 0.7817 36 1 1.9055 3.8493 3.2020 37 1 0.1836 3.6172 2.8152 38 1 -1.0639 5.8212 3.1542 39 1 -1.8318 8.3577 2.6678 40 1 -0.6412 9.4275 1.8889 41 1 0.2035 8.9362 4.5387 42 1 0.2364 10.8921 7.2406 43 1 3.8748 1.0202 1.9370 44 1 6.3276 1.0142 1.7203 45 1 7.3713 1.4491 -0.4671 46 1 5.9621 1.8823 -2.4394 47 1 3.5092 1.8794 -2.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603254477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:30 Heat of formation + Delta-G solvation = 65.559090 kcal Electronic energy + Delta-G solvation = -26767.749420 eV Core-core repulsion = 22952.313255 eV Total energy + Delta-G solvation = -3815.436165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.25510 -40.72984 -38.90194 -36.99512 -36.02078 -34.56109 -33.63563 -31.96306 -31.79261 -31.64058 -30.59670 -27.59399 -26.92242 -25.20798 -24.72062 -23.53659 -23.11689 -22.76731 -21.84646 -21.56944 -19.32674 -18.58730 -18.02467 -17.64607 -17.41511 -16.74932 -16.56918 -15.99359 -15.91641 -15.69640 -15.53564 -15.41108 -15.08332 -14.74440 -14.70895 -14.31064 -14.26690 -13.87648 -13.77631 -13.42015 -13.24294 -13.02603 -12.81823 -12.80608 -12.71465 -12.46522 -12.16289 -12.03074 -11.99706 -11.93597 -11.85740 -11.77228 -11.63021 -11.07318 -10.96467 -10.73189 -10.22113 -9.84090 -9.70185 -9.01337 -7.92765 -5.23191 0.36941 0.48291 0.59459 1.23534 1.45652 1.51530 1.52649 1.62700 2.60067 2.60579 2.85497 3.33608 3.41043 3.61155 3.62300 3.74849 3.95257 3.98700 4.08660 4.12850 4.16650 4.18214 4.21828 4.26475 4.27341 4.34562 4.38588 4.52492 4.56938 4.64354 4.70523 4.72872 4.89265 4.91945 5.04883 5.12468 5.13664 5.14627 5.18977 5.19605 5.43904 5.51507 5.52288 5.55547 5.61072 5.65018 6.08268 6.08750 6.27139 7.33719 7.49901 8.05190 8.30891 9.31494 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.001936 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.823329 B =14459.611612 C =15167.534519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.134 3.866 4 H 0.076 0.924 5 O -0.371 6.371 6 C 0.063 3.937 7 C 0.116 3.884 8 N -0.284 5.284 9 C -0.013 4.013 10 C -0.039 4.039 11 C 0.236 3.764 12 N -0.740 5.740 13 C -0.241 4.241 14 H 0.086 0.914 15 C -0.081 4.081 16 N -0.974 5.974 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.292 1.292 20 H -0.298 1.298 21 N -0.297 5.297 22 N -0.114 5.114 23 C -0.127 4.127 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.149 0.851 38 H 0.232 0.768 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -29.081 -16.458 33.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.077 3.923 4 H 0.094 0.906 5 O -0.289 6.289 6 C -0.015 4.015 7 C -0.004 4.004 8 N -0.079 5.079 9 C -0.165 4.165 10 C -0.178 4.178 11 C 0.108 3.892 12 N -0.383 5.383 13 C -0.372 4.372 14 H 0.104 0.896 15 C -0.272 4.272 16 N -0.625 5.625 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.219 1.219 20 H -0.225 1.225 21 N -0.164 5.164 22 N -0.093 5.093 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.152 4.152 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.201 0.799 42 H 0.059 0.941 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.533 -28.955 -16.938 33.999 hybrid contribution -0.579 0.857 0.999 1.438 sum 4.954 -28.098 -15.939 32.682 Atomic orbital electron populations 1.21739 0.94389 1.02347 1.02215 1.21589 0.96943 0.92762 1.03363 1.21156 0.89248 0.95214 0.86723 0.90582 1.87809 1.89550 1.18044 1.33490 1.22419 1.00888 0.82346 0.95850 1.22059 1.07915 0.71265 0.99136 1.47372 1.10268 1.09856 1.40358 1.23917 0.95515 0.91417 1.05608 1.22332 0.94227 0.96283 1.04920 1.18982 0.94115 0.88502 0.87605 1.42547 1.43455 1.34222 1.18051 1.19748 1.12586 1.04229 1.00663 0.89631 1.25671 1.00593 1.03091 0.97883 1.69870 1.35502 1.44361 1.12756 0.84975 0.77703 0.78529 0.77939 1.18458 1.21861 1.22504 1.75037 1.10416 1.12856 1.18100 1.78165 1.17379 0.94366 1.19355 1.20549 0.96590 1.01331 0.94220 1.21120 0.93781 0.98906 0.98772 1.21456 0.95127 1.00196 0.98445 1.21496 1.00991 0.99159 0.92951 1.21434 0.93825 0.99911 0.99684 1.21279 0.95599 0.99876 0.97322 0.92465 0.92573 0.91658 0.89617 0.91205 0.91767 0.93370 0.87123 0.83271 0.75132 0.91667 0.95344 0.79873 0.94106 0.85634 0.84826 0.84463 0.84301 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.76 71.98 0.70 -0.72 16 2 C -0.11 -1.17 5.62 30.59 0.17 -1.00 16 3 C 0.13 1.82 2.30 29.85 0.07 1.89 16 4 H 0.08 0.94 7.68 -2.38 -0.02 0.92 16 5 O -0.37 -5.70 8.95 -148.98 -1.33 -7.04 16 6 C 0.06 1.06 5.85 71.98 0.42 1.48 16 7 C 0.12 1.95 6.82 86.38 0.59 2.54 16 8 N -0.28 -7.60 3.44 -347.73 -1.20 -8.79 16 9 C -0.01 -0.36 11.50 83.49 0.96 0.60 16 10 C -0.04 -1.48 6.62 41.60 0.28 -1.21 16 11 C 0.24 9.88 6.82 85.63 0.58 10.47 16 12 N -0.74 -39.33 5.59 -347.19 -1.94 -41.27 16 13 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 14 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 15 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 16 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 17 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 21 N -0.30 -12.47 12.41 -48.60 -0.60 -13.07 16 22 N -0.11 -4.06 12.91 37.02 0.48 -3.58 16 23 C -0.13 -2.03 4.88 -19.87 -0.10 -2.12 16 24 C -0.11 -1.83 9.36 22.27 0.21 -1.62 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 27 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 28 C -0.12 -1.84 9.67 22.27 0.22 -1.63 16 29 H 0.06 0.62 7.97 -2.38 -0.02 0.60 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.05 1.03 8.09 -2.38 -0.02 1.01 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.15 1.48 8.07 -2.38 -0.02 1.46 16 38 H 0.23 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.37 21.60 7.66 -92.70 -0.71 20.89 16 42 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 43 H 0.13 2.04 7.77 -2.91 -0.02 2.02 16 44 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 47 H 0.13 1.52 8.04 -2.90 -0.02 1.49 16 Total: -1.00 -76.36 400.80 4.04 -72.32 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.25 Total: 27.68 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 6.08 Total: -13.66 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -2.98 Total: -128.06 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -1.33 Total: -7.04 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.36 4.04 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603254477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.880 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds