Wall clock time and date at job start Tue Mar 31 2020 15:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99662 * 2 1 4 4 N 1.46504 * 109.46547 * 125.00259 * 3 2 1 5 5 C 1.34783 * 119.99658 * 180.27556 * 4 3 2 6 6 O 1.21592 * 119.99897 * 359.72888 * 5 4 3 7 7 C 1.47541 * 120.00012 * 179.72557 * 5 4 3 8 8 C 1.40346 * 120.47673 * 179.97438 * 7 5 4 9 9 C 1.36852 * 118.49307 * 179.97438 * 8 7 5 10 10 C 1.39401 * 119.37977 * 0.02562 * 9 8 7 11 11 N 1.38456 * 119.53610 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00313 * 359.97438 * 11 10 9 13 13 C 1.53040 * 109.46587 * 275.07160 * 12 11 10 14 14 C 1.53185 * 109.31536 * 178.61549 * 13 12 11 15 15 N 1.46925 * 108.77616 * 54.63461 * 14 13 12 16 16 C 1.36938 * 120.62578 * 126.37033 * 15 14 13 17 17 H 1.08004 * 119.99918 * 207.69538 * 16 15 14 18 18 C 1.38814 * 120.00659 * 27.70032 * 16 15 14 19 19 N 1.31624 * 119.99387 * 17.34651 * 18 16 15 20 20 Si 1.86794 * 120.00247 * 197.34874 * 18 16 15 21 21 H 1.48504 * 109.46998 * 59.99784 * 20 18 16 22 22 H 1.48494 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47044 * 299.99761 * 20 18 16 24 24 C 1.46920 * 118.73928 * 306.38900 * 15 14 13 25 25 C 1.53045 * 109.46248 * 155.00363 * 12 11 10 26 26 N 1.32596 * 120.92104 * 359.97438 * 10 9 8 27 27 C 1.31676 * 121.63859 * 359.70896 * 26 10 9 28 28 H 1.07999 * 119.99450 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00140 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47524 * 5.00663 * 3 2 1 32 32 H 1.08991 * 109.47602 * 244.99872 * 3 2 1 33 33 H 0.96999 * 120.00297 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.75504 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.31120 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99545 * 179.97438 * 11 10 9 37 37 H 1.09003 * 109.45949 * 35.03156 * 12 11 10 38 38 H 1.08999 * 109.49470 * 298.57074 * 13 12 11 39 39 H 1.08999 * 109.49654 * 58.65694 * 13 12 11 40 40 H 1.09000 * 109.58562 * 294.84556 * 14 13 12 41 41 H 1.09001 * 109.58757 * 174.42226 * 14 13 12 42 42 H 0.96998 * 119.99378 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.58901 * 293.82467 * 24 15 14 44 44 H 1.08997 * 109.70312 * 173.46474 * 24 15 14 45 45 H 1.09007 * 109.49422 * 301.34196 * 25 12 11 46 46 H 1.09003 * 109.49963 * 61.43052 * 25 12 11 47 47 H 1.08001 * 119.74449 * 180.28317 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7746 2.4111 1.3365 6 8 3.7105 3.3605 0.5795 7 6 4.7072 2.4406 2.4794 8 6 5.5253 3.5590 2.7020 9 6 6.3749 3.5433 3.7747 10 6 6.4036 2.4262 4.6081 11 7 7.2624 2.4066 5.6940 12 6 8.1330 3.5543 5.9602 13 6 9.4125 3.4272 5.1303 14 6 10.3048 4.6460 5.3850 15 7 10.5334 4.7709 6.8310 16 6 11.8055 4.8486 7.3320 17 1 12.0139 4.5001 8.3328 18 6 12.8271 5.3754 6.5538 19 7 12.5397 6.1023 5.4948 20 14 14.6097 5.0526 7.0094 21 1 14.8667 3.5900 6.9968 22 1 15.5004 5.7197 6.0262 23 1 14.8789 5.5909 8.3669 24 6 9.3713 4.8103 7.7291 25 6 8.4895 3.5896 7.4481 26 7 5.6200 1.3822 4.3753 27 6 4.7840 1.3591 3.3583 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4028 -0.9313 33 1 3.0446 0.5746 1.7356 34 1 5.4852 4.4127 2.0417 35 1 7.0178 4.3881 3.9733 36 1 7.2875 1.6328 6.2785 37 1 7.6145 4.4740 5.6891 38 1 9.9443 2.5204 5.4183 39 1 9.1564 3.3785 4.0719 40 1 9.8111 5.5442 5.0142 41 1 11.2587 4.5137 4.8744 42 1 13.2536 6.4700 4.9508 43 1 8.8014 5.7219 7.5494 44 1 9.7071 4.7876 8.7657 45 1 7.5762 3.6566 8.0395 46 1 9.0300 2.6813 7.7144 47 1 4.1564 0.4945 3.2000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609574872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:33 Heat of formation + Delta-G solvation = 46.319031 kcal Electronic energy + Delta-G solvation = -27166.206827 eV Core-core repulsion = 23349.936351 eV Total energy + Delta-G solvation = -3816.270476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.71105 -39.39278 -37.97074 -36.09680 -35.24889 -33.23562 -32.73761 -32.26777 -30.50968 -30.09822 -28.99838 -26.48734 -25.16693 -23.83258 -23.22042 -22.20306 -21.77649 -20.89634 -20.31502 -19.43773 -18.14490 -17.38861 -17.07028 -16.75811 -16.13955 -15.68691 -15.14770 -14.97252 -14.79374 -14.53116 -14.35264 -13.96859 -13.84888 -13.63399 -13.51058 -13.13418 -13.03414 -12.94205 -12.69644 -12.59812 -12.42575 -11.61082 -11.60099 -11.16931 -11.15868 -10.77246 -10.66107 -10.45024 -10.40515 -10.31583 -10.02071 -9.98834 -9.91535 -9.74267 -9.57953 -9.45779 -9.31192 -8.54162 -7.69565 -6.78228 -5.86228 -3.28862 0.85295 1.33714 1.61569 2.86613 3.10037 3.13188 3.34787 3.41093 3.41778 3.93289 4.29211 4.43474 4.43816 4.62115 4.72450 4.83795 4.96723 5.08647 5.13547 5.17060 5.31369 5.34499 5.35408 5.41307 5.46315 5.57583 5.68722 5.90367 5.92766 6.02306 6.04970 6.10109 6.12292 6.24318 6.25558 6.34515 6.40648 6.52182 6.54240 6.64187 6.80758 7.02872 7.24378 7.27139 7.53833 7.57915 7.72851 8.03123 8.09280 8.37108 9.13171 9.76159 10.31669 11.22528 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.001991 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.222912 B =14062.232826 C =14510.047351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.148 3.852 4 N -0.731 5.731 5 C 0.575 3.425 6 O -0.546 6.546 7 C -0.272 4.272 8 C 0.027 3.973 9 C -0.245 4.245 10 C 0.435 3.565 11 N -0.702 5.702 12 C 0.153 3.847 13 C -0.153 4.153 14 C 0.172 3.828 15 N -0.591 5.591 16 C -0.257 4.257 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.149 3.851 25 C -0.139 4.139 26 N -0.556 5.556 27 C 0.191 3.809 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.697 -11.833 -6.507 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.025 3.975 4 N -0.383 5.383 5 C 0.363 3.637 6 O -0.424 6.424 7 C -0.281 4.281 8 C 0.001 3.999 9 C -0.270 4.270 10 C 0.196 3.804 11 N -0.328 5.328 12 C 0.049 3.951 13 C -0.194 4.194 14 C 0.046 3.954 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.021 3.979 25 C -0.179 4.179 26 N -0.275 5.275 27 C 0.029 3.971 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.390 -11.545 -6.538 24.327 hybrid contribution 0.888 -0.266 0.065 0.930 sum -19.502 -11.811 -6.473 23.700 Atomic orbital electron populations 1.23992 0.95789 1.02451 0.98168 1.23029 0.96260 0.98173 1.02050 1.20390 0.91774 0.95494 0.89889 1.45865 1.41555 1.19977 1.30946 1.18026 0.79464 0.81920 0.84240 1.90768 1.68590 1.35538 1.47477 1.20371 1.06592 0.99536 1.01631 1.21108 0.88979 0.96128 0.93667 1.21300 1.06172 1.00680 0.98808 1.18641 0.86371 0.88756 0.86583 1.45121 1.39541 1.21263 1.26919 1.21238 0.90055 0.87103 0.96675 1.22710 0.95931 1.02669 0.98058 1.20788 0.98291 0.91245 0.85111 1.44074 1.01125 1.84776 1.01411 1.19133 0.84195 1.34775 1.00567 0.91625 1.25043 0.98606 0.97129 0.98694 1.70013 1.31557 1.34296 1.18680 0.86362 0.84721 0.77971 0.77671 1.21026 1.21589 1.20822 1.20842 0.88867 0.93047 0.95109 1.22341 0.99860 1.02193 0.93467 1.67242 1.10304 1.27129 1.22784 1.22469 0.91798 0.95371 0.87416 0.87863 0.88138 0.86603 0.91021 0.90557 0.76538 0.83998 0.83926 0.76172 0.90279 0.92156 0.92839 0.96107 0.89015 0.93452 0.96115 0.92154 0.92377 0.91603 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 14.32 29.01 0.42 -0.36 16 2 C -0.18 -0.94 9.63 -36.03 -0.35 -1.28 16 3 C 0.15 1.12 6.11 -5.19 -0.03 1.09 16 4 N -0.73 -6.21 5.50 -62.53 -0.34 -6.56 16 5 C 0.57 7.00 7.77 -12.46 -0.10 6.90 16 6 O -0.55 -8.56 16.41 5.28 0.09 -8.47 16 7 C -0.27 -3.30 5.89 -104.82 -0.62 -3.92 16 8 C 0.03 0.35 9.65 -39.29 -0.38 -0.03 16 9 C -0.24 -3.33 8.73 -39.65 -0.35 -3.67 16 10 C 0.43 6.05 7.61 -155.28 -1.18 4.86 16 11 N -0.70 -9.51 5.22 -53.92 -0.28 -9.79 16 12 C 0.15 2.32 2.10 -67.89 -0.14 2.18 16 13 C -0.15 -2.73 5.55 -26.61 -0.15 -2.87 16 14 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 15 N -0.59 -13.91 2.99 -172.33 -0.52 -14.43 16 16 C -0.26 -6.77 9.59 -15.06 -0.14 -6.92 16 17 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 18 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -25.39 11.19 55.49 0.62 -24.77 16 20 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 2.85 6.51 -3.72 -0.02 2.82 16 25 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 26 N -0.56 -7.34 10.38 -12.14 -0.13 -7.46 16 27 C 0.19 2.09 10.71 -17.12 -0.18 1.91 16 28 H 0.10 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16 30 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 2.37 6.51 -40.82 -0.27 2.10 16 34 H 0.14 1.79 7.73 -52.48 -0.41 1.38 16 35 H 0.14 1.93 6.03 -52.48 -0.32 1.62 16 36 H 0.40 5.06 8.72 -40.82 -0.36 4.71 16 37 H 0.08 1.21 6.42 -51.93 -0.33 0.88 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.91 7.64 -51.93 -0.40 0.51 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 45 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.15 1.07 6.41 -52.49 -0.34 0.74 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -31.13 382.79 -10.19 -41.31 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.88 Total: 5.98 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.48 Total: 2.30 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.65 Total: -63.02 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.13 -10.19 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609574872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.633 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds