Wall clock time and date at job start Tue Mar 31 2020 15:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99662 * 2 1 4 4 N 1.46504 * 109.46547 * 125.00259 * 3 2 1 5 5 C 1.34783 * 119.99658 * 180.27556 * 4 3 2 6 6 O 1.21592 * 119.99897 * 359.72888 * 5 4 3 7 7 C 1.47541 * 120.00012 * 179.72557 * 5 4 3 8 8 C 1.40346 * 120.47673 * 179.97438 * 7 5 4 9 9 C 1.36852 * 118.49307 * 179.97438 * 8 7 5 10 10 C 1.39401 * 119.37977 * 0.02562 * 9 8 7 11 11 N 1.38456 * 119.53610 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00313 * 359.97438 * 11 10 9 13 13 C 1.53040 * 109.46587 * 275.07160 * 12 11 10 14 14 C 1.53185 * 109.31536 * 178.61549 * 13 12 11 15 15 N 1.46925 * 108.77616 * 54.63461 * 14 13 12 16 16 C 1.36938 * 120.62578 * 126.37033 * 15 14 13 17 17 H 1.08004 * 119.99918 * 207.69538 * 16 15 14 18 18 C 1.38814 * 120.00659 * 27.70032 * 16 15 14 19 19 N 1.31624 * 119.99387 * 17.34651 * 18 16 15 20 20 Si 1.86794 * 120.00247 * 197.34874 * 18 16 15 21 21 H 1.48504 * 109.46998 * 59.99784 * 20 18 16 22 22 H 1.48494 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47044 * 299.99761 * 20 18 16 24 24 C 1.46920 * 118.73928 * 306.38900 * 15 14 13 25 25 C 1.53045 * 109.46248 * 155.00363 * 12 11 10 26 26 N 1.32596 * 120.92104 * 359.97438 * 10 9 8 27 27 C 1.31676 * 121.63859 * 359.70896 * 26 10 9 28 28 H 1.07999 * 119.99450 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00140 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47524 * 5.00663 * 3 2 1 32 32 H 1.08991 * 109.47602 * 244.99872 * 3 2 1 33 33 H 0.96999 * 120.00297 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.75504 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.31120 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99545 * 179.97438 * 11 10 9 37 37 H 1.09003 * 109.45949 * 35.03156 * 12 11 10 38 38 H 1.08999 * 109.49470 * 298.57074 * 13 12 11 39 39 H 1.08999 * 109.49654 * 58.65694 * 13 12 11 40 40 H 1.09000 * 109.58562 * 294.84556 * 14 13 12 41 41 H 1.09001 * 109.58757 * 174.42226 * 14 13 12 42 42 H 0.96998 * 119.99378 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.58901 * 293.82467 * 24 15 14 44 44 H 1.08997 * 109.70312 * 173.46474 * 24 15 14 45 45 H 1.09007 * 109.49422 * 301.34196 * 25 12 11 46 46 H 1.09003 * 109.49963 * 61.43052 * 25 12 11 47 47 H 1.08001 * 119.74449 * 180.28317 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7746 2.4111 1.3365 6 8 3.7105 3.3605 0.5795 7 6 4.7072 2.4406 2.4794 8 6 5.5253 3.5590 2.7020 9 6 6.3749 3.5433 3.7747 10 6 6.4036 2.4262 4.6081 11 7 7.2624 2.4066 5.6940 12 6 8.1330 3.5543 5.9602 13 6 9.4125 3.4272 5.1303 14 6 10.3048 4.6460 5.3850 15 7 10.5334 4.7709 6.8310 16 6 11.8055 4.8486 7.3320 17 1 12.0139 4.5001 8.3328 18 6 12.8271 5.3754 6.5538 19 7 12.5397 6.1023 5.4948 20 14 14.6097 5.0526 7.0094 21 1 14.8667 3.5900 6.9968 22 1 15.5004 5.7197 6.0262 23 1 14.8789 5.5909 8.3669 24 6 9.3713 4.8103 7.7291 25 6 8.4895 3.5896 7.4481 26 7 5.6200 1.3822 4.3753 27 6 4.7840 1.3591 3.3583 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4028 -0.9313 33 1 3.0446 0.5746 1.7356 34 1 5.4852 4.4127 2.0417 35 1 7.0178 4.3881 3.9733 36 1 7.2875 1.6328 6.2785 37 1 7.6145 4.4740 5.6891 38 1 9.9443 2.5204 5.4183 39 1 9.1564 3.3785 4.0719 40 1 9.8111 5.5442 5.0142 41 1 11.2587 4.5137 4.8744 42 1 13.2536 6.4700 4.9508 43 1 8.8014 5.7219 7.5494 44 1 9.7071 4.7876 8.7657 45 1 7.5762 3.6566 8.0395 46 1 9.0300 2.6813 7.7144 47 1 4.1564 0.4945 3.2000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609574872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:32 Heat of formation + Delta-G solvation = 26.665593 kcal Electronic energy + Delta-G solvation = -27167.059064 eV Core-core repulsion = 23349.936351 eV Total energy + Delta-G solvation = -3817.122714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70618 -40.41102 -39.33652 -36.80673 -36.66642 -34.35365 -33.76461 -33.50243 -31.92325 -31.62721 -30.26569 -27.35904 -26.69889 -25.00568 -24.33969 -23.67659 -23.18171 -21.72524 -21.02000 -20.85430 -19.12510 -18.74461 -18.24901 -17.98391 -17.01472 -16.76889 -16.50435 -16.11141 -15.88053 -15.62658 -15.56226 -15.32840 -15.09409 -14.84525 -14.76036 -14.35563 -14.14161 -14.02006 -13.91187 -13.68542 -13.35060 -13.17800 -12.99051 -12.66277 -12.57443 -12.21241 -12.07900 -12.02579 -11.87049 -11.71149 -11.36336 -11.32964 -11.07957 -10.86581 -10.61683 -10.52448 -10.42326 -10.05972 -8.78016 -8.68875 -7.88103 -5.32482 -0.13643 0.33736 1.20015 1.47384 1.49718 1.56029 1.88739 2.02697 2.36524 2.51434 2.94236 3.28083 3.49392 3.66733 3.80039 3.82483 3.86687 3.91398 3.98968 4.02912 4.18329 4.20745 4.30048 4.46625 4.59520 4.65857 4.68399 4.76001 4.80230 4.85037 4.93252 4.99461 5.02854 5.05920 5.13460 5.23108 5.32391 5.34080 5.46054 5.48346 5.64552 5.67943 5.72556 5.80581 5.91980 6.38921 6.52158 6.53606 7.04129 7.14654 7.20456 7.85860 8.36221 9.18323 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.001991 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.222912 B =14062.232826 C =14510.047351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.573 3.427 6 O -0.588 6.588 7 C -0.275 4.275 8 C 0.019 3.981 9 C -0.255 4.255 10 C 0.426 3.574 11 N -0.696 5.696 12 C 0.167 3.833 13 C -0.136 4.136 14 C 0.179 3.821 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.069 0.931 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.143 3.857 25 C -0.124 4.124 26 N -0.562 5.562 27 C 0.201 3.799 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.414 0.586 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.002 0.998 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.675 -14.398 -5.746 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.364 5.364 5 C 0.362 3.638 6 O -0.469 6.469 7 C -0.283 4.283 8 C -0.007 4.007 9 C -0.280 4.280 10 C 0.188 3.812 11 N -0.324 5.324 12 C 0.062 3.938 13 C -0.177 4.177 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.087 0.913 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.017 3.983 25 C -0.163 4.163 26 N -0.280 5.280 27 C 0.040 3.960 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.252 0.748 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.421 -14.179 -5.746 27.144 hybrid contribution 1.360 0.519 -0.219 1.472 sum -21.062 -13.660 -5.966 25.803 Atomic orbital electron populations 1.24181 0.95662 1.03248 0.96628 1.22950 0.96362 0.97344 1.03336 1.20450 0.91440 0.96811 0.89044 1.45759 1.40339 1.19262 1.31088 1.18082 0.79713 0.82195 0.83815 1.90751 1.69997 1.37302 1.48898 1.20474 1.06321 0.99633 1.01908 1.21198 0.89237 0.96679 0.93555 1.21272 1.06608 1.00801 0.99289 1.18721 0.86765 0.89096 0.86628 1.44788 1.39328 1.20965 1.27271 1.20900 0.88934 0.87910 0.96021 1.22440 0.96428 0.99734 0.99084 1.20542 0.97143 0.92485 0.84574 1.44323 1.01657 1.85088 1.02221 1.19488 0.85673 1.33546 1.00610 0.91320 1.25762 1.02168 0.97545 0.99060 1.70167 1.32094 1.35830 1.19893 0.85393 0.80331 0.77714 0.77330 1.20584 1.22298 1.20005 1.21016 0.87995 0.94864 0.94433 1.22138 1.00283 1.00069 0.93842 1.67324 1.10567 1.26690 1.23457 1.23057 0.91090 0.95966 0.85936 0.86164 0.88304 0.85061 0.91890 0.91509 0.74766 0.84338 0.84478 0.75273 0.90228 0.92881 0.92239 0.97963 0.92767 0.94153 0.96164 0.91889 0.89227 0.91486 0.79009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.32 67.78 0.97 -0.11 16 2 C -0.18 -1.48 9.63 25.64 0.25 -1.24 16 3 C 0.15 2.02 6.11 85.63 0.52 2.55 16 4 N -0.71 -10.68 5.50 -469.99 -2.59 -13.27 16 5 C 0.57 13.36 7.77 86.70 0.67 14.03 16 6 O -0.59 -18.55 16.41 -4.01 -0.07 -18.62 16 7 C -0.27 -6.26 5.89 -19.99 -0.12 -6.38 16 8 C 0.02 0.50 9.65 22.46 0.22 0.71 16 9 C -0.25 -6.77 8.73 22.22 0.19 -6.58 16 10 C 0.43 11.07 7.61 133.25 1.01 12.09 16 11 N -0.70 -17.39 5.22 -324.51 -1.70 -19.09 16 12 C 0.17 4.84 2.10 45.02 0.09 4.93 16 13 C -0.14 -4.85 5.55 30.67 0.17 -4.68 16 14 C 0.18 8.27 5.31 86.36 0.46 8.73 16 15 N -0.61 -28.99 2.99 -699.13 -2.09 -31.08 16 16 C -0.26 -13.99 9.59 84.03 0.81 -13.18 16 17 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 19 N -0.93 -54.45 11.19 21.65 0.24 -54.21 16 20 Si 0.96 44.19 29.59 68.60 2.03 46.22 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.14 5.35 6.51 86.36 0.56 5.92 16 25 C -0.12 -3.54 5.55 30.67 0.17 -3.37 16 26 N -0.56 -13.32 10.38 -192.32 -2.00 -15.31 16 27 C 0.20 3.81 10.71 85.04 0.91 4.72 16 28 H 0.12 0.44 8.06 -2.91 -0.02 0.42 16 29 H 0.10 0.70 7.84 -2.91 -0.02 0.68 16 30 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.06 1.00 7.79 -2.39 -0.02 0.98 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.41 3.55 6.51 -92.71 -0.60 2.95 16 34 H 0.14 3.60 7.73 -2.91 -0.02 3.57 16 35 H 0.14 3.73 6.03 -2.91 -0.02 3.72 16 36 H 0.41 9.19 8.72 -92.70 -0.81 8.38 16 37 H 0.08 2.35 6.42 -2.39 -0.02 2.34 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 2.02 7.64 -2.39 -0.02 2.01 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.05 2.90 6.04 -2.39 -0.01 2.89 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 2.30 7.94 -2.39 -0.02 2.28 16 45 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.19 1.88 6.41 -2.91 -0.02 1.86 16 Total: -1.00 -69.04 382.79 0.73 -68.31 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.42 Total: 21.20 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.31 Total: 15.84 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -8.13 Total: -132.96 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.07 Total: -18.62 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.04 0.73 -68.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609574872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.976 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds