Wall clock time and date at job start Tue Mar 31 2020 15:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 H 1.09005 * 109.46956 * 305.68919 * 3 2 1 5 5 C 1.50704 * 109.47153 * 185.69266 * 3 2 1 6 6 H 1.07997 * 119.99732 * 275.00178 * 5 3 2 7 7 C 1.37878 * 120.00036 * 95.00019 * 5 3 2 8 8 N 1.31512 * 119.99702 * 184.83065 * 7 5 3 9 9 Si 1.86796 * 120.00163 * 4.83312 * 7 5 3 10 10 H 1.48496 * 109.47394 * 84.85893 * 9 7 5 11 11 H 1.48499 * 109.47182 * 204.85930 * 9 7 5 12 12 H 1.48503 * 109.46873 * 324.86087 * 9 7 5 13 13 N 1.46499 * 109.47595 * 65.68810 * 3 2 1 14 14 C 1.34778 * 120.00109 * 275.00391 * 13 3 2 15 15 O 1.21276 * 120.00063 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99742 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46859 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47141 * 180.02562 * 17 16 14 19 19 C 1.40249 * 120.27406 * 269.72668 * 18 17 16 20 20 C 1.50698 * 119.85506 * 359.97438 * 19 18 17 21 21 N 1.31211 * 120.28208 * 179.68831 * 19 18 17 22 22 C 1.33977 * 120.81392 * 0.60678 * 21 19 18 23 23 C 1.38862 * 132.58154 * 179.65228 * 22 21 19 24 24 C 1.38658 * 107.65035 * 180.02562 * 23 22 21 25 25 N 1.31408 * 108.99379 * 359.97438 * 24 23 22 26 26 N 1.37163 * 120.53957 * 359.66882 * 22 21 19 27 27 C 1.35530 * 120.27826 * 89.99906 * 18 17 16 28 28 C 1.50699 * 120.43492 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46909 * 60.00585 * 1 2 3 30 30 H 1.09000 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47218 * 300.00008 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99992 * 2 1 3 33 33 H 1.08998 * 109.46909 * 119.99415 * 2 1 3 34 34 H 0.97001 * 119.99990 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99991 * 94.99984 * 13 3 2 36 36 H 1.08995 * 109.47802 * 299.99911 * 16 14 13 37 37 H 1.09001 * 109.47260 * 60.00358 * 16 14 13 38 38 H 1.09001 * 109.46794 * 300.00097 * 17 16 14 39 39 H 1.08992 * 109.47065 * 60.00050 * 17 16 14 40 40 H 1.09008 * 109.47094 * 90.00175 * 20 19 18 41 41 H 1.09000 * 109.47295 * 209.99876 * 20 19 18 42 42 H 1.09000 * 109.47726 * 330.00764 * 20 19 18 43 43 H 1.08000 * 126.17138 * 0.05332 * 23 22 21 44 44 H 1.08006 * 125.49820 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47221 * 89.99963 * 28 27 18 46 46 H 1.09001 * 109.47095 * 210.00435 * 28 27 18 47 47 H 1.09001 * 109.47169 * 330.00179 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4205 1.4964 -1.5217 9 14 3.0419 1.9170 -2.8785 10 1 2.7754 3.3739 -2.9865 11 1 3.7403 1.4495 -4.1028 12 1 1.7563 1.1881 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3342 2.6308 0.4659 16 6 0.0666 3.3271 2.6849 17 6 -1.3536 3.8845 2.5695 18 6 -1.7376 4.5532 3.8642 19 6 -2.3680 3.8190 4.8793 20 6 -2.6631 2.3555 4.6741 21 7 -2.6969 4.3996 6.0091 22 6 -2.4493 5.7010 6.2094 23 6 -2.6923 6.5495 7.2814 24 6 -2.2223 7.8076 6.9367 25 7 -1.7146 7.7575 5.7257 26 7 -1.8394 6.4521 5.2373 27 6 -1.4816 5.8703 4.0552 28 6 -0.8102 6.6816 2.9772 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8253 1.5984 -2.3973 35 1 2.2946 2.1153 1.9977 36 1 0.1068 2.5993 3.4953 37 1 0.7603 4.1416 2.8933 38 1 -1.3934 4.6124 1.7592 39 1 -2.0476 3.0703 2.3608 40 1 -1.8168 1.7621 5.0205 41 1 -3.5542 2.0818 5.2391 42 1 -2.8316 2.1638 3.6144 43 1 -3.1622 6.2783 8.2153 44 1 -2.2664 8.6868 7.5626 45 1 -1.5672 7.1131 2.3225 46 1 -0.2267 7.4809 3.4343 47 1 -0.1509 6.0376 2.3952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:56 Heat of formation + Delta-G solvation = 58.453751 kcal Electronic energy + Delta-G solvation = -28213.329639 eV Core-core repulsion = 24397.585364 eV Total energy + Delta-G solvation = -3815.744276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59261 -39.56566 -38.73386 -35.80144 -35.23305 -33.92467 -32.41912 -31.73892 -31.00987 -30.04124 -28.52875 -28.04190 -27.44484 -24.83860 -22.87183 -22.39649 -21.99360 -20.99622 -20.26389 -19.58608 -18.80021 -17.52313 -16.78385 -16.44213 -15.98498 -15.71567 -15.47328 -15.14472 -14.55675 -14.34734 -14.03707 -13.85657 -13.73721 -13.67965 -13.36910 -13.11639 -13.04450 -12.80395 -12.75816 -12.41966 -12.21390 -12.04056 -11.93122 -11.88707 -11.82422 -11.32775 -11.07947 -10.99671 -10.92321 -10.72694 -10.70350 -10.05479 -10.00431 -9.89432 -9.50349 -9.26393 -9.13749 -8.75040 -8.06543 -8.03248 -6.28492 -4.32436 0.30716 0.65079 1.82965 2.39224 3.13293 3.18706 3.23354 3.30136 3.36518 3.53178 3.78069 3.92165 4.01303 4.27520 4.48260 4.64010 4.85947 4.90969 4.98119 5.01645 5.09173 5.11450 5.14508 5.24832 5.28455 5.34929 5.45759 5.50909 5.62719 5.64588 5.68114 5.85143 5.92959 6.00115 6.03670 6.13079 6.17817 6.19989 6.35334 6.59295 6.73156 6.92225 6.94971 7.22043 7.23355 7.30690 7.44889 7.51983 8.08047 8.51682 8.72211 8.92057 9.33536 10.83245 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002706 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.646351 B =10346.575690 C =11048.659758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.554 6.554 16 C -0.142 4.142 17 C -0.050 4.050 18 C -0.186 4.186 19 C 0.221 3.779 20 C -0.114 4.114 21 N -0.476 5.476 22 C 0.265 3.735 23 C -0.276 4.276 24 C 0.087 3.913 25 N -0.318 5.318 26 N -0.311 5.311 27 C 0.197 3.803 28 C -0.124 4.124 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.308 6.991 13.945 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.434 6.434 16 C -0.182 4.182 17 C -0.089 4.089 18 C -0.193 4.193 19 C 0.058 3.942 20 C -0.171 4.171 21 N -0.189 5.189 22 C 0.037 3.963 23 C -0.307 4.307 24 C -0.091 4.091 25 N -0.142 5.142 26 N -0.082 5.082 27 C 0.082 3.918 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.177 0.823 44 H 0.213 0.787 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.514 7.449 13.068 21.609 hybrid contribution -0.028 0.268 -0.225 0.351 sum -15.542 7.716 12.843 21.588 Atomic orbital electron populations 1.21898 0.97386 0.98822 1.02008 1.22071 0.93696 0.99472 1.01210 1.19165 0.95453 0.89107 0.82875 0.93103 1.21018 0.88752 1.51810 0.95429 0.90412 1.24948 0.94866 0.93692 0.98830 1.69881 1.09797 1.48229 1.24546 0.86902 0.81276 0.79585 0.82236 1.19902 1.21238 1.18306 1.46637 1.14488 1.55738 1.18215 1.20373 0.82787 0.79314 0.89017 1.90666 1.50863 1.60280 1.41544 1.21720 0.97228 1.01582 0.97669 1.20252 0.96350 1.00930 0.91382 1.20202 1.06523 0.91977 1.00557 1.21842 0.88161 0.97314 0.86908 1.20957 1.03943 0.87948 1.04258 1.68081 1.22237 1.06229 1.22352 1.20764 0.96501 0.88202 0.90859 1.20913 1.17383 0.91731 1.00655 1.23805 0.94104 0.98377 0.92779 1.77835 1.29611 0.93039 1.13756 1.47148 1.39651 1.09641 1.11757 1.20543 0.93818 0.92315 0.85153 1.21082 1.01285 1.00386 0.95331 0.93117 0.95153 0.93112 0.92163 0.93056 0.92208 0.77392 0.89116 0.89301 0.89253 0.88619 0.88887 0.89618 0.88913 0.82307 0.78738 0.88751 0.89315 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.53 37.16 0.32 -2.31 16 2 C -0.13 -2.55 5.59 -26.73 -0.15 -2.70 16 3 C 0.24 5.21 1.89 -69.08 -0.13 5.08 16 4 H 0.05 1.24 4.73 -51.93 -0.25 0.99 16 5 C -0.53 -13.66 9.05 -34.44 -0.31 -13.97 16 6 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 8 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 9 Si 0.87 20.85 26.99 -169.99 -4.59 16.26 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.05 6.82 56.52 0.39 -5.66 16 13 N -0.70 -12.56 5.03 -54.93 -0.28 -12.84 16 14 C 0.50 7.98 6.43 -10.99 -0.07 7.91 16 15 O -0.55 -10.50 13.13 5.56 0.07 -10.43 16 16 C -0.14 -1.56 5.55 -27.88 -0.15 -1.71 16 17 C -0.05 -0.51 3.56 -27.88 -0.10 -0.61 16 18 C -0.19 -1.96 5.12 -104.84 -0.54 -2.49 16 19 C 0.22 2.38 6.83 -82.10 -0.56 1.82 16 20 C -0.11 -0.88 9.80 36.00 0.35 -0.53 16 21 N -0.48 -6.08 10.40 -8.46 -0.09 -6.17 16 22 C 0.26 3.51 7.92 -155.52 -1.23 2.27 16 23 C -0.28 -3.07 10.91 -39.20 -0.43 -3.50 16 24 C 0.09 0.88 11.94 -17.58 -0.21 0.67 16 25 N -0.32 -4.02 12.52 30.47 0.38 -3.64 16 26 N -0.31 -4.04 3.90 -8.49 -0.03 -4.08 16 27 C 0.20 2.24 6.86 -81.47 -0.56 1.68 16 28 C -0.12 -1.15 9.28 36.01 0.33 -0.81 16 29 H 0.05 1.00 7.89 -51.93 -0.41 0.59 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.89 5.63 -51.93 -0.29 0.59 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.39 6.24 8.59 -40.82 -0.35 5.89 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.89 7.40 -51.93 -0.38 0.51 16 38 H 0.09 0.94 6.66 -51.93 -0.35 0.59 16 39 H 0.10 0.95 5.96 -51.93 -0.31 0.64 16 40 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.64 6.00 -51.93 -0.31 0.33 16 43 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 47 H 0.10 0.86 5.86 -51.93 -0.30 0.56 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.81 378.00 -8.35 -41.16 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.75 Total: 5.92 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.53 Total: -7.11 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.76 Total: -51.50 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.59 Total: 16.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.81 -8.35 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.614 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds