Wall clock time and date at job start Tue Mar 31 2020 15:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 H 1.09005 * 109.46956 * 305.68919 * 3 2 1 5 5 C 1.50704 * 109.47153 * 185.69266 * 3 2 1 6 6 H 1.07997 * 119.99732 * 275.00178 * 5 3 2 7 7 C 1.37878 * 120.00036 * 95.00019 * 5 3 2 8 8 N 1.31512 * 119.99702 * 184.83065 * 7 5 3 9 9 Si 1.86796 * 120.00163 * 4.83312 * 7 5 3 10 10 H 1.48496 * 109.47394 * 84.85893 * 9 7 5 11 11 H 1.48499 * 109.47182 * 204.85930 * 9 7 5 12 12 H 1.48503 * 109.46873 * 324.86087 * 9 7 5 13 13 N 1.46499 * 109.47595 * 65.68810 * 3 2 1 14 14 C 1.34778 * 120.00109 * 275.00391 * 13 3 2 15 15 O 1.21276 * 120.00063 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99742 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46859 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47141 * 180.02562 * 17 16 14 19 19 C 1.40249 * 120.27406 * 269.72668 * 18 17 16 20 20 C 1.50698 * 119.85506 * 359.97438 * 19 18 17 21 21 N 1.31211 * 120.28208 * 179.68831 * 19 18 17 22 22 C 1.33977 * 120.81392 * 0.60678 * 21 19 18 23 23 C 1.38862 * 132.58154 * 179.65228 * 22 21 19 24 24 C 1.38658 * 107.65035 * 180.02562 * 23 22 21 25 25 N 1.31408 * 108.99379 * 359.97438 * 24 23 22 26 26 N 1.37163 * 120.53957 * 359.66882 * 22 21 19 27 27 C 1.35530 * 120.27826 * 89.99906 * 18 17 16 28 28 C 1.50699 * 120.43492 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46909 * 60.00585 * 1 2 3 30 30 H 1.09000 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47218 * 300.00008 * 1 2 3 32 32 H 1.08995 * 109.47218 * 239.99992 * 2 1 3 33 33 H 1.08998 * 109.46909 * 119.99415 * 2 1 3 34 34 H 0.97001 * 119.99990 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99991 * 94.99984 * 13 3 2 36 36 H 1.08995 * 109.47802 * 299.99911 * 16 14 13 37 37 H 1.09001 * 109.47260 * 60.00358 * 16 14 13 38 38 H 1.09001 * 109.46794 * 300.00097 * 17 16 14 39 39 H 1.08992 * 109.47065 * 60.00050 * 17 16 14 40 40 H 1.09008 * 109.47094 * 90.00175 * 20 19 18 41 41 H 1.09000 * 109.47295 * 209.99876 * 20 19 18 42 42 H 1.09000 * 109.47726 * 330.00764 * 20 19 18 43 43 H 1.08000 * 126.17138 * 0.05332 * 23 22 21 44 44 H 1.08006 * 125.49820 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47221 * 89.99963 * 28 27 18 46 46 H 1.09001 * 109.47095 * 210.00435 * 28 27 18 47 47 H 1.09001 * 109.47169 * 330.00179 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4205 1.4964 -1.5217 9 14 3.0419 1.9170 -2.8785 10 1 2.7754 3.3739 -2.9865 11 1 3.7403 1.4495 -4.1028 12 1 1.7563 1.1881 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3342 2.6308 0.4659 16 6 0.0666 3.3271 2.6849 17 6 -1.3536 3.8845 2.5695 18 6 -1.7376 4.5532 3.8642 19 6 -2.3680 3.8190 4.8793 20 6 -2.6631 2.3555 4.6741 21 7 -2.6969 4.3996 6.0091 22 6 -2.4493 5.7010 6.2094 23 6 -2.6923 6.5495 7.2814 24 6 -2.2223 7.8076 6.9367 25 7 -1.7146 7.7575 5.7257 26 7 -1.8394 6.4521 5.2373 27 6 -1.4816 5.8703 4.0552 28 6 -0.8102 6.6816 2.9772 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8253 1.5984 -2.3973 35 1 2.2946 2.1153 1.9977 36 1 0.1068 2.5993 3.4953 37 1 0.7603 4.1416 2.8933 38 1 -1.3934 4.6124 1.7592 39 1 -2.0476 3.0703 2.3608 40 1 -1.8168 1.7621 5.0205 41 1 -3.5542 2.0818 5.2391 42 1 -2.8316 2.1638 3.6144 43 1 -3.1622 6.2783 8.2153 44 1 -2.2664 8.6868 7.5626 45 1 -1.5672 7.1131 2.3225 46 1 -0.2267 7.4809 3.4343 47 1 -0.1509 6.0376 2.3952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:55 Heat of formation + Delta-G solvation = 38.016517 kcal Electronic energy + Delta-G solvation = -28214.215864 eV Core-core repulsion = 24397.585364 eV Total energy + Delta-G solvation = -3816.630501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.41346 -40.80425 -39.68141 -37.06246 -36.39009 -34.82019 -34.34683 -33.14424 -31.91643 -30.90363 -29.61825 -29.09230 -28.63244 -25.85709 -24.53527 -23.21930 -22.92039 -21.84044 -21.64707 -21.08460 -19.61854 -19.19281 -17.88064 -17.47446 -17.19794 -17.14825 -16.61319 -16.07435 -15.92877 -15.42118 -15.11897 -14.77728 -14.75074 -14.69426 -14.47854 -14.20257 -14.12013 -13.99703 -13.73472 -13.57890 -13.54267 -13.30248 -12.98792 -12.94560 -12.88072 -12.68398 -12.49191 -12.29626 -12.13693 -11.89542 -11.83558 -11.74003 -11.59775 -11.15802 -10.85201 -10.81103 -10.59094 -10.23428 -9.59399 -8.87536 -8.36770 -6.42099 -0.49796 -0.18603 1.02590 1.30875 1.35683 1.45704 1.61118 1.93363 2.28443 2.28935 2.58777 2.77658 3.03589 3.08053 3.24607 3.63854 3.85771 4.00090 4.09181 4.20654 4.27438 4.34024 4.37867 4.41159 4.44081 4.49647 4.50966 4.62181 4.68076 4.70782 4.75615 4.83833 4.89634 4.92220 5.00312 5.10789 5.13311 5.19352 5.33125 5.35394 5.37413 5.43587 5.47752 5.59255 5.63762 5.87329 6.17203 6.40143 6.62116 6.64555 7.03281 7.24654 7.60376 8.78458 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002706 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.646351 B =10346.575690 C =11048.659758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.242 3.758 4 H 0.032 0.968 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.926 3.074 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.252 1.252 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.581 6.581 16 C -0.129 4.129 17 C -0.042 4.042 18 C -0.182 4.182 19 C 0.219 3.781 20 C -0.113 4.113 21 N -0.498 5.498 22 C 0.237 3.763 23 C -0.284 4.284 24 C 0.095 3.905 25 N -0.346 5.346 26 N -0.324 5.324 27 C 0.184 3.816 28 C -0.120 4.120 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.403 0.597 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.176 0.824 44 H 0.235 0.765 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.083 7.041 14.923 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.138 3.862 4 H 0.049 0.951 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.751 3.249 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.176 1.176 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.462 6.462 16 C -0.169 4.169 17 C -0.081 4.081 18 C -0.189 4.189 19 C 0.056 3.944 20 C -0.170 4.170 21 N -0.212 5.212 22 C 0.009 3.991 23 C -0.315 4.315 24 C -0.083 4.083 25 N -0.171 5.171 26 N -0.095 5.095 27 C 0.069 3.931 28 C -0.177 4.177 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.238 0.762 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.193 0.807 44 H 0.251 0.749 45 H 0.121 0.879 46 H 0.102 0.898 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.307 7.503 14.068 23.532 hybrid contribution 0.497 0.271 -0.415 0.702 sum -16.810 7.774 13.653 23.009 Atomic orbital electron populations 1.21769 0.95365 1.00284 1.01561 1.21984 0.95420 0.97997 1.00942 1.18858 0.92801 0.90343 0.84247 0.95052 1.21275 0.90719 1.49994 0.94340 0.92832 1.25630 0.95699 0.94124 1.01515 1.69992 1.11398 1.50705 1.25184 0.86057 0.80023 0.79315 0.79490 1.19904 1.20908 1.17581 1.46385 1.15817 1.56318 1.17108 1.21069 0.81422 0.78243 0.90275 1.90662 1.51444 1.61021 1.43060 1.21671 0.97892 1.02150 0.95201 1.20177 0.95877 1.00997 0.91048 1.20177 1.06541 0.91681 1.00479 1.22337 0.87200 0.98526 0.86325 1.21080 1.04716 0.86089 1.05116 1.68134 1.23426 1.06250 1.23400 1.21237 0.97270 0.88839 0.91726 1.21308 1.17302 0.91934 1.00959 1.24470 0.92348 0.99314 0.92165 1.77775 1.30825 0.93376 1.15082 1.47307 1.40263 1.09755 1.12224 1.20953 0.93879 0.92969 0.85281 1.21107 1.01441 1.00198 0.94930 0.94819 0.92732 0.92232 0.93723 0.92111 0.92203 0.76202 0.86615 0.87950 0.89570 0.87956 0.87478 0.89143 0.87793 0.80676 0.74912 0.87866 0.89815 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.53 71.98 0.61 -3.91 16 2 C -0.12 -4.88 5.59 30.59 0.17 -4.71 16 3 C 0.24 10.45 1.89 44.25 0.08 10.53 16 4 H 0.03 1.50 4.73 -2.38 -0.01 1.49 16 5 C -0.52 -27.13 9.05 25.60 0.23 -26.90 16 6 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 7 C 0.03 1.66 5.47 84.66 0.46 2.12 16 8 N -0.93 -54.81 13.96 21.45 0.30 -54.51 16 9 Si 0.93 43.25 26.99 68.60 1.85 45.10 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.25 -11.36 6.82 99.48 0.68 -10.68 16 13 N -0.71 -24.10 5.03 -446.10 -2.24 -26.34 16 14 C 0.50 14.84 6.43 87.66 0.56 15.40 16 15 O -0.58 -20.80 13.13 -3.02 -0.04 -20.84 16 16 C -0.13 -2.45 5.55 29.85 0.17 -2.29 16 17 C -0.04 -0.75 3.56 29.85 0.11 -0.64 16 18 C -0.18 -3.49 5.12 -20.00 -0.10 -3.59 16 19 C 0.22 4.31 6.83 43.14 0.29 4.61 16 20 C -0.11 -1.45 9.80 71.24 0.70 -0.75 16 21 N -0.50 -12.19 10.40 -180.67 -1.88 -14.07 16 22 C 0.24 6.08 7.92 133.14 1.05 7.13 16 23 C -0.28 -5.99 10.91 22.52 0.25 -5.74 16 24 C 0.09 1.75 11.94 84.86 1.01 2.76 16 25 N -0.35 -8.43 12.52 -57.51 -0.72 -9.15 16 26 N -0.32 -8.17 3.90 -180.77 -0.71 -8.87 16 27 C 0.18 3.97 6.86 41.20 0.28 4.25 16 28 C -0.12 -2.08 9.28 71.24 0.66 -1.42 16 29 H 0.03 1.25 7.89 -2.39 -0.02 1.23 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.91 5.63 -2.39 -0.01 1.90 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.40 12.14 8.59 -92.71 -0.80 11.34 16 36 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.75 7.40 -2.39 -0.02 1.73 16 38 H 0.09 1.62 6.66 -2.39 -0.02 1.61 16 39 H 0.10 1.72 5.96 -2.39 -0.01 1.70 16 40 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.10 6.00 -2.39 -0.01 1.09 16 43 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.23 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.53 8.13 -2.39 -0.02 1.51 16 47 H 0.11 1.67 5.86 -2.39 -0.01 1.65 16 Total: -1.00 -71.80 378.00 3.29 -68.51 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.18 Total: 23.30 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.55 Total: -3.14 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -5.25 Total: -112.94 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.04 Total: -20.84 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.85 Total: 45.10 kcal Total: -71.80 3.29 -68.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.530 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds