Wall clock time and date at job start Tue Mar 31 2020 15:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47175 * 60.00893 * 9 7 5 11 11 H 1.48504 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47672 * 300.00505 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.40250 * 120.27048 * 269.72553 * 18 17 16 20 20 C 1.50695 * 119.85809 * 359.97438 * 19 18 17 21 21 N 1.31218 * 120.27834 * 179.76302 * 19 18 17 22 22 C 1.33980 * 120.81263 * 0.49862 * 21 19 18 23 23 C 1.38860 * 132.57749 * 179.78099 * 22 21 19 24 24 C 1.38663 * 107.64821 * 179.97438 * 23 22 21 25 25 N 1.31411 * 108.99109 * 0.02562 * 24 23 22 26 26 N 1.37170 * 120.53951 * 359.75608 * 22 21 19 27 27 C 1.35528 * 120.27386 * 89.99576 * 18 17 16 28 28 C 1.50698 * 120.43853 * 359.95560 * 27 18 17 29 29 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 30 30 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 32 32 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 33 33 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 34 34 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 37 37 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 38 38 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 39 39 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 40 40 H 1.08998 * 109.46926 * 90.00828 * 20 19 18 41 41 H 1.09006 * 109.47108 * 210.00105 * 20 19 18 42 42 H 1.09003 * 109.47512 * 330.00185 * 20 19 18 43 43 H 1.07999 * 126.17759 * 0.02562 * 23 22 21 44 44 H 1.08004 * 125.50451 * 179.97438 * 24 23 22 45 45 H 1.09007 * 109.46724 * 90.00185 * 28 27 18 46 46 H 1.08995 * 109.47142 * 209.99744 * 28 27 18 47 47 H 1.08996 * 109.47241 * 330.00700 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2155 2.6496 12 1 6.5967 0.1452 0.2341 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5358 5.9188 -4.0105 20 6 -0.8617 6.7205 -2.9271 21 7 -1.8806 6.5004 -5.1351 22 6 -2.4859 5.8072 -6.1088 23 6 -2.9512 6.1651 -7.3672 24 6 -3.4955 5.0319 -7.9522 25 7 -3.3821 4.0233 -7.1175 26 7 -2.7533 4.4711 -5.9504 27 6 -2.3999 3.8413 -4.7918 28 6 -2.6861 2.3740 -4.6025 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1232 -1.9977 36 1 0.7225 4.1501 -2.8716 37 1 0.0680 2.6061 -3.4682 38 1 -2.0754 3.0670 -2.3098 39 1 -1.4210 4.6110 -1.7131 40 1 0.2185 6.6866 -3.0687 41 1 -1.2021 7.7550 -2.9754 42 1 -1.1140 6.3001 -1.9536 43 1 -2.8980 7.1485 -7.8106 44 1 -3.9414 4.9858 -8.9348 45 1 -3.6709 2.2511 -4.1516 46 1 -2.6641 1.8718 -5.5696 47 1 -1.9305 1.9377 -3.9492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:59 Heat of formation + Delta-G solvation = 59.103104 kcal Electronic energy + Delta-G solvation = -28120.408739 eV Core-core repulsion = 24304.692622 eV Total energy + Delta-G solvation = -3815.716118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.57177 -39.46131 -38.65217 -35.73787 -35.12462 -33.87912 -32.42906 -31.39003 -30.81234 -29.98378 -28.47829 -27.98079 -26.97929 -24.78404 -23.04555 -22.36118 -21.92226 -20.97823 -20.15915 -19.35453 -18.77366 -17.33170 -16.69992 -16.37705 -15.81124 -15.48720 -15.30528 -15.11358 -14.52475 -14.37742 -13.99564 -13.83721 -13.69218 -13.55784 -13.35204 -13.16870 -12.83101 -12.78158 -12.51735 -12.38999 -12.14114 -11.88672 -11.85207 -11.50128 -11.32588 -11.25874 -11.03294 -10.99383 -10.90505 -10.84717 -10.36920 -10.21840 -9.97370 -9.68030 -9.46407 -9.10701 -9.00940 -8.53603 -8.01411 -7.87132 -6.16212 -4.25865 0.32874 0.67385 1.84707 2.40658 3.15798 3.22306 3.28246 3.28718 3.33830 3.55904 3.80776 4.00422 4.04389 4.32055 4.54691 4.67716 4.88596 4.96950 5.00814 5.06202 5.12908 5.14969 5.18284 5.27836 5.32315 5.38913 5.50705 5.54667 5.64378 5.70722 5.72900 5.88557 5.98023 6.17431 6.20233 6.34215 6.37201 6.40146 6.60791 6.98413 7.14654 7.23615 7.31796 7.40722 7.47367 7.57390 7.68653 7.85803 8.14301 8.62136 8.73221 9.08340 9.41790 10.88955 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002474 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.030361 B =11312.953685 C =11771.790822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.549 6.549 16 C -0.141 4.141 17 C -0.050 4.050 18 C -0.185 4.185 19 C 0.222 3.778 20 C -0.115 4.115 21 N -0.476 5.476 22 C 0.265 3.735 23 C -0.276 4.276 24 C 0.087 3.913 25 N -0.319 5.319 26 N -0.311 5.311 27 C 0.195 3.805 28 C -0.123 4.123 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 8.482 -15.072 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.428 6.428 16 C -0.182 4.182 17 C -0.089 4.089 18 C -0.191 4.191 19 C 0.058 3.942 20 C -0.172 4.172 21 N -0.189 5.189 22 C 0.037 3.963 23 C -0.307 4.307 24 C -0.091 4.091 25 N -0.143 5.143 26 N -0.082 5.082 27 C 0.080 3.920 28 C -0.180 4.180 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.177 0.823 44 H 0.212 0.788 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.609 7.959 -14.465 20.183 hybrid contribution 1.345 0.042 -0.509 1.438 sum -10.265 8.001 -14.974 19.839 Atomic orbital electron populations 1.21834 0.98351 0.97994 1.01176 1.21938 0.92610 0.99882 1.02259 1.18770 0.94131 0.89150 0.81064 0.93280 1.21196 0.90781 1.39155 1.06273 0.92201 1.24877 0.98558 0.94792 0.95399 1.69878 1.35225 1.37469 1.09356 0.86533 0.84914 0.78327 0.77473 1.20180 1.21124 1.20190 1.46524 1.14717 1.55809 1.18543 1.20251 0.82853 0.79459 0.88934 1.90680 1.51419 1.60039 1.40704 1.21715 0.97263 1.01443 0.97751 1.20254 0.96147 1.00983 0.91526 1.20231 1.05623 0.94800 0.98457 1.21864 0.89641 0.90795 0.91855 1.20967 1.00936 1.00124 0.95141 1.68091 1.14708 1.35573 1.00553 1.20773 0.98176 0.81129 0.96222 1.20908 1.14834 1.01463 0.93539 1.23797 0.96271 0.89917 0.99105 1.77822 1.22219 1.22303 0.92001 1.47145 1.39479 1.09315 1.12257 1.20534 0.92947 0.96409 0.82105 1.21070 1.04438 0.87598 1.04881 0.94314 0.95933 0.93129 0.95117 0.88330 0.92488 0.78000 0.89210 0.89622 0.89273 0.88549 0.88838 0.89612 0.88818 0.82326 0.78766 0.88752 0.89391 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.25 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.01 11.29 55.43 0.63 -23.38 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -13.25 5.02 -54.93 -0.28 -13.52 16 14 C 0.50 8.42 6.40 -10.98 -0.07 8.35 16 15 O -0.55 -11.07 13.12 5.55 0.07 -11.00 16 16 C -0.14 -1.63 5.54 -27.88 -0.15 -1.79 16 17 C -0.05 -0.54 3.56 -27.89 -0.10 -0.64 16 18 C -0.18 -2.00 5.12 -104.84 -0.54 -2.54 16 19 C 0.22 2.48 6.83 -82.10 -0.56 1.92 16 20 C -0.11 -0.96 9.80 36.00 0.35 -0.61 16 21 N -0.48 -6.22 10.40 -8.45 -0.09 -6.31 16 22 C 0.27 3.56 7.92 -155.51 -1.23 2.33 16 23 C -0.28 -3.11 10.91 -39.19 -0.43 -3.54 16 24 C 0.09 0.88 11.94 -17.57 -0.21 0.67 16 25 N -0.32 -4.04 12.52 30.47 0.38 -3.66 16 26 N -0.31 -4.08 3.90 -8.49 -0.03 -4.11 16 27 C 0.20 2.25 6.86 -81.47 -0.56 1.69 16 28 C -0.12 -1.13 9.28 36.00 0.33 -0.80 16 29 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.39 6.32 8.54 -40.82 -0.35 5.97 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.87 7.40 -51.93 -0.38 0.49 16 38 H 0.09 0.97 6.66 -51.93 -0.35 0.63 16 39 H 0.10 1.03 5.96 -51.93 -0.31 0.72 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.72 6.00 -51.93 -0.31 0.40 16 43 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.20 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 47 H 0.10 0.85 5.86 -51.93 -0.30 0.54 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -31.74 378.08 -8.93 -40.68 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.75 Total: 7.11 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.54 Total: -6.54 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.61 Total: -50.99 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -8.93 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.779 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds