Wall clock time and date at job start Tue Mar 31 2020 15:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47175 * 60.00893 * 9 7 5 11 11 H 1.48504 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47672 * 300.00505 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.40250 * 120.27048 * 269.72553 * 18 17 16 20 20 C 1.50695 * 119.85809 * 359.97438 * 19 18 17 21 21 N 1.31218 * 120.27834 * 179.76302 * 19 18 17 22 22 C 1.33980 * 120.81263 * 0.49862 * 21 19 18 23 23 C 1.38860 * 132.57749 * 179.78099 * 22 21 19 24 24 C 1.38663 * 107.64821 * 179.97438 * 23 22 21 25 25 N 1.31411 * 108.99109 * 0.02562 * 24 23 22 26 26 N 1.37170 * 120.53951 * 359.75608 * 22 21 19 27 27 C 1.35528 * 120.27386 * 89.99576 * 18 17 16 28 28 C 1.50698 * 120.43853 * 359.95560 * 27 18 17 29 29 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 30 30 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 32 32 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 33 33 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 34 34 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 37 37 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 38 38 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 39 39 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 40 40 H 1.08998 * 109.46926 * 90.00828 * 20 19 18 41 41 H 1.09006 * 109.47108 * 210.00105 * 20 19 18 42 42 H 1.09003 * 109.47512 * 330.00185 * 20 19 18 43 43 H 1.07999 * 126.17759 * 0.02562 * 23 22 21 44 44 H 1.08004 * 125.50451 * 179.97438 * 24 23 22 45 45 H 1.09007 * 109.46724 * 90.00185 * 28 27 18 46 46 H 1.08995 * 109.47142 * 209.99744 * 28 27 18 47 47 H 1.08996 * 109.47241 * 330.00700 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2155 2.6496 12 1 6.5967 0.1452 0.2341 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5358 5.9188 -4.0105 20 6 -0.8617 6.7205 -2.9271 21 7 -1.8806 6.5004 -5.1351 22 6 -2.4859 5.8072 -6.1088 23 6 -2.9512 6.1651 -7.3672 24 6 -3.4955 5.0319 -7.9522 25 7 -3.3821 4.0233 -7.1175 26 7 -2.7533 4.4711 -5.9504 27 6 -2.3999 3.8413 -4.7918 28 6 -2.6861 2.3740 -4.6025 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1232 -1.9977 36 1 0.7225 4.1501 -2.8716 37 1 0.0680 2.6061 -3.4682 38 1 -2.0754 3.0670 -2.3098 39 1 -1.4210 4.6110 -1.7131 40 1 0.2185 6.6866 -3.0687 41 1 -1.2021 7.7550 -2.9754 42 1 -1.1140 6.3001 -1.9536 43 1 -2.8980 7.1485 -7.8106 44 1 -3.9414 4.9858 -8.9348 45 1 -3.6709 2.2511 -4.1516 46 1 -2.6641 1.8718 -5.5696 47 1 -1.9305 1.9377 -3.9492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:58 Heat of formation + Delta-G solvation = 40.272772 kcal Electronic energy + Delta-G solvation = -28121.225284 eV Core-core repulsion = 24304.692622 eV Total energy + Delta-G solvation = -3816.532662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41009 -40.74063 -39.66439 -37.02374 -36.39006 -34.81254 -34.22397 -32.85412 -31.90187 -30.88200 -29.45917 -28.89225 -28.52515 -25.89004 -24.74493 -23.20710 -22.90219 -21.84466 -21.67570 -20.93294 -19.61461 -18.86702 -17.77652 -17.31721 -17.17820 -17.03539 -16.60988 -16.07347 -15.95742 -15.46262 -14.95085 -14.77611 -14.71140 -14.57768 -14.44358 -14.27398 -14.09250 -13.73621 -13.57579 -13.47989 -13.33705 -13.11604 -12.97078 -12.87904 -12.84955 -12.68342 -12.62397 -12.16296 -12.15082 -11.99726 -11.86926 -11.72902 -11.51979 -11.00694 -10.84730 -10.60072 -10.45620 -10.22020 -9.52047 -8.87026 -8.12947 -6.29452 -0.49931 -0.18554 1.02695 1.46644 1.47213 1.54909 1.61725 1.98778 2.28544 2.39819 2.72022 2.80059 3.05978 3.16678 3.24574 3.64725 3.86051 4.01063 4.09602 4.21601 4.28324 4.34541 4.42605 4.46176 4.51798 4.55980 4.64424 4.65945 4.68237 4.74007 4.82892 4.85303 4.90435 5.00501 5.10639 5.12654 5.14021 5.33380 5.37220 5.43187 5.50405 5.59765 5.61765 5.70922 5.86663 5.99566 6.23449 6.40635 6.62035 6.80025 7.10634 7.38462 7.70542 8.91688 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002474 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.030361 B =11312.953685 C =11771.790822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.583 6.583 16 C -0.127 4.127 17 C -0.042 4.042 18 C -0.183 4.183 19 C 0.219 3.781 20 C -0.114 4.114 21 N -0.498 5.498 22 C 0.236 3.764 23 C -0.284 4.284 24 C 0.095 3.905 25 N -0.345 5.345 26 N -0.324 5.324 27 C 0.186 3.814 28 C -0.119 4.119 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.175 0.825 44 H 0.236 0.764 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 8.904 -17.064 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.358 5.358 14 C 0.287 3.713 15 O -0.465 6.465 16 C -0.166 4.166 17 C -0.081 4.081 18 C -0.189 4.189 19 C 0.056 3.944 20 C -0.171 4.171 21 N -0.212 5.212 22 C 0.009 3.991 23 C -0.315 4.315 24 C -0.082 4.082 25 N -0.169 5.169 26 N -0.095 5.095 27 C 0.071 3.929 28 C -0.176 4.176 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.193 0.807 44 H 0.252 0.748 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.274 8.395 -16.493 21.670 hybrid contribution 1.171 -0.042 0.079 1.174 sum -10.104 8.353 -16.414 21.007 Atomic orbital electron populations 1.21674 0.96667 0.99031 1.00584 1.21787 0.94045 0.99318 1.01008 1.18300 0.93237 0.89131 0.81796 0.98150 1.21584 0.91842 1.38642 1.06442 0.91195 1.25712 1.02878 0.94584 0.95217 1.70035 1.36932 1.38435 1.09870 0.85517 0.79716 0.78410 0.77403 1.19654 1.21428 1.19173 1.46300 1.16002 1.56167 1.17359 1.21084 0.81535 0.78411 0.90245 1.90675 1.52208 1.61028 1.42548 1.21651 0.98055 1.02116 0.94826 1.20154 0.95524 1.00918 0.91476 1.20150 1.05914 0.94689 0.98192 1.22290 0.89029 0.91234 0.91865 1.21065 1.01392 1.00113 0.94498 1.68132 1.15807 1.36044 1.01240 1.21243 0.99026 0.81681 0.97176 1.21308 1.14464 1.02600 0.93106 1.24476 0.94966 0.88746 1.00030 1.77768 1.23040 1.23615 0.92464 1.47310 1.40086 1.09386 1.12754 1.20948 0.92610 0.97393 0.81927 1.21114 1.05200 0.86283 1.05001 0.93026 0.94004 0.95490 0.94323 0.91445 0.92729 0.76345 0.87062 0.87460 0.89412 0.88558 0.87612 0.89100 0.88094 0.80711 0.74837 0.87877 0.89596 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.51 71.98 0.61 -4.47 16 2 C -0.12 -5.72 5.45 30.60 0.17 -5.55 16 3 C 0.28 13.38 2.24 44.24 0.10 13.48 16 4 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 5 C -0.55 -27.65 8.73 25.60 0.22 -27.42 16 6 H 0.07 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.91 -50.98 11.29 21.45 0.24 -50.74 16 9 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.71 -25.83 5.02 -446.09 -2.24 -28.07 16 14 C 0.50 16.20 6.40 87.66 0.56 16.76 16 15 O -0.58 -23.41 13.12 -3.04 -0.04 -23.45 16 16 C -0.13 -2.60 5.54 29.85 0.17 -2.44 16 17 C -0.04 -0.82 3.56 29.85 0.11 -0.71 16 18 C -0.18 -3.69 5.12 -20.00 -0.10 -3.79 16 19 C 0.22 4.60 6.83 43.14 0.29 4.90 16 20 C -0.11 -1.72 9.80 71.23 0.70 -1.02 16 21 N -0.50 -12.62 10.40 -180.66 -1.88 -14.50 16 22 C 0.24 6.15 7.92 133.13 1.05 7.20 16 23 C -0.28 -6.01 10.91 22.52 0.25 -5.76 16 24 C 0.10 1.74 11.94 84.86 1.01 2.76 16 25 N -0.34 -8.28 12.52 -57.50 -0.72 -9.00 16 26 N -0.32 -8.18 3.90 -180.76 -0.71 -8.88 16 27 C 0.19 4.04 6.86 41.20 0.28 4.32 16 28 C -0.12 -2.01 9.28 71.24 0.66 -1.35 16 29 H 0.05 1.98 5.64 -2.39 -0.01 1.97 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.03 1.22 7.85 -2.38 -0.02 1.20 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 3.60 5.95 -2.39 -0.01 3.58 16 34 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.40 12.33 8.54 -92.71 -0.79 11.54 16 36 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.11 1.82 7.40 -2.39 -0.02 1.80 16 38 H 0.09 1.77 6.66 -2.38 -0.02 1.75 16 39 H 0.10 1.91 5.96 -2.39 -0.01 1.90 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.10 1.37 6.00 -2.39 -0.01 1.36 16 43 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 44 H 0.24 1.97 8.06 -2.91 -0.02 1.94 16 45 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.09 1.49 8.13 -2.39 -0.02 1.47 16 47 H 0.11 1.61 5.86 -2.39 -0.01 1.59 16 Total: -1.00 -70.40 378.08 3.43 -66.97 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.21 Total: 26.47 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 6.53 Total: -1.81 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -5.30 Total: -111.19 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -70.40 3.43 -66.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.243 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds