Wall clock time and date at job start Tue Mar 31 2020 15:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47038 * 2 1 4 4 H 1.09003 * 109.46918 * 306.12735 * 3 2 1 5 5 C 1.50698 * 109.47320 * 186.12384 * 3 2 1 6 6 H 1.08001 * 119.99695 * 245.43598 * 5 3 2 7 7 C 1.37871 * 120.00013 * 65.43356 * 5 3 2 8 8 N 1.31520 * 120.00077 * 5.75927 * 7 5 3 9 9 Si 1.86804 * 120.00021 * 185.75396 * 7 5 3 10 10 H 1.48505 * 109.46779 * 94.99932 * 9 7 5 11 11 H 1.48496 * 109.47289 * 214.99701 * 9 7 5 12 12 H 1.48499 * 109.46910 * 334.99904 * 9 7 5 13 13 N 1.46500 * 109.46964 * 66.12219 * 3 2 1 14 14 C 1.34781 * 120.00044 * 274.99881 * 13 3 2 15 15 O 1.21587 * 119.99982 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99920 * 179.97438 * 14 13 3 17 17 C 1.40164 * 120.00010 * 184.87791 * 16 14 13 18 18 C 1.39524 * 119.83019 * 212.15757 * 17 16 14 19 19 C 1.36484 * 120.75052 * 180.02562 * 18 17 16 20 20 C 1.39294 * 120.08767 * 359.97438 * 19 18 17 21 21 C 1.40781 * 119.63143 * 0.15837 * 20 19 18 22 22 C 1.45940 * 106.34631 * 180.25222 * 21 20 19 23 23 N 1.30252 * 107.80293 * 359.76615 * 22 21 20 24 24 N 1.37215 * 133.66694 * 179.97438 * 20 19 18 25 25 C 1.46494 * 125.47362 * 0.02562 * 24 20 19 26 26 C 1.53001 * 109.47448 * 239.71767 * 25 24 20 27 27 C 1.53007 * 109.47046 * 119.71815 * 25 24 20 28 28 C 1.38019 * 119.82781 * 32.52705 * 17 16 14 29 29 H 1.09003 * 109.47296 * 60.00099 * 1 2 3 30 30 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47085 * 299.99886 * 1 2 3 32 32 H 1.08994 * 109.47150 * 240.00076 * 2 1 3 33 33 H 1.08995 * 109.47399 * 119.99599 * 2 1 3 34 34 H 0.96998 * 119.99635 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00009 * 94.99927 * 13 3 2 36 36 H 0.97000 * 120.00034 * 4.88816 * 16 14 13 37 37 H 1.07993 * 119.62759 * 359.97374 * 18 17 16 38 38 H 1.07998 * 119.95936 * 180.02562 * 19 18 17 39 39 H 1.07995 * 126.09676 * 179.74996 * 22 21 20 40 40 H 1.09001 * 109.47387 * 359.72036 * 25 24 20 41 41 H 1.09001 * 109.47045 * 300.00478 * 26 25 24 42 42 H 1.09001 * 109.47030 * 59.99706 * 26 25 24 43 43 H 1.08996 * 109.46943 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46766 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46600 * 299.99939 * 27 25 24 46 46 H 1.08996 * 109.46818 * 60.00367 * 27 25 24 47 47 H 1.07999 * 120.26397 * 359.52466 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5899 1.9870 -0.8301 5 6 3.5394 1.4453 -0.1516 6 1 4.1628 1.8047 0.6538 7 6 4.1151 0.9891 -1.3183 8 7 3.3565 0.6582 -2.3404 9 14 5.9728 0.8412 -1.4474 10 1 6.3827 -0.5480 -1.1192 11 1 6.4006 1.1697 -2.8309 12 1 6.6118 1.7840 -0.4946 13 7 1.6757 2.0893 1.2630 14 6 0.4607 2.6554 1.4043 15 8 -0.3331 2.6289 0.4837 16 7 0.1253 3.2499 2.5665 17 6 -1.1719 3.7480 2.7500 18 6 -1.3762 4.8758 3.5458 19 6 -2.6313 5.3764 3.7377 20 6 -3.7275 4.7624 3.1364 21 6 -3.5331 3.6223 2.3338 22 6 -4.8536 3.2281 1.8534 23 7 -5.7221 4.0661 2.3434 24 7 -5.0755 5.0188 3.1374 25 6 -5.7313 6.1178 3.8502 26 6 -6.7434 5.5478 4.8461 27 6 -6.4551 7.0171 2.8460 28 6 -2.2415 3.1159 2.1489 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.7617 0.3376 -3.1613 35 1 2.3088 2.1101 1.9976 36 1 0.7817 3.3332 3.2758 37 1 -0.5317 5.3575 4.0159 38 1 -2.7746 6.2503 4.3559 39 1 -5.0717 2.3912 1.2067 40 1 -4.9828 6.7010 4.3865 41 1 -7.4919 4.9646 4.3098 42 1 -6.2278 4.9071 5.5615 43 1 -7.2316 6.3656 5.3761 44 1 -6.9427 7.8351 3.3764 45 1 -5.7340 7.4232 2.1365 46 1 -7.2037 6.4339 2.3097 47 1 -2.0818 2.2441 1.5318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613855201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:03 Heat of formation + Delta-G solvation = 54.339469 kcal Electronic energy + Delta-G solvation = -27924.236346 eV Core-core repulsion = 24108.313662 eV Total energy + Delta-G solvation = -3815.922684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28013 -39.78644 -37.42903 -35.68502 -35.09996 -33.76041 -32.36902 -31.37027 -30.70188 -29.76272 -28.00714 -27.58781 -26.69795 -23.53413 -23.11000 -22.90163 -21.94543 -20.54768 -19.75023 -19.49114 -18.16888 -17.53827 -17.38750 -15.97118 -15.63199 -15.28670 -15.12126 -14.88571 -14.70245 -14.53014 -14.11532 -13.76511 -13.51564 -13.42719 -13.24911 -13.04036 -12.66744 -12.58850 -12.37259 -12.21719 -11.91702 -11.62102 -11.59790 -11.46170 -11.33348 -11.17773 -10.99718 -10.80809 -10.69641 -10.35243 -10.24726 -10.14838 -9.65507 -9.43708 -9.18509 -9.06640 -8.52023 -8.50138 -7.88321 -7.25919 -6.14069 -4.20830 1.00936 1.57559 2.31794 2.55200 3.23716 3.24254 3.32219 3.34971 3.68700 4.09854 4.20977 4.32913 4.51428 4.64112 4.69633 4.80873 4.89878 4.97288 5.15313 5.19338 5.21176 5.27149 5.40876 5.42785 5.47944 5.52215 5.75646 5.83973 5.92037 6.05055 6.19424 6.38272 6.41872 6.45162 6.55448 6.58223 6.64095 7.01760 7.04794 7.11161 7.24302 7.33781 7.36066 7.46214 7.65214 7.66939 7.84352 7.97692 8.11222 8.76609 8.87116 9.28840 9.47411 10.93705 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.002342 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.035877 B =11953.139186 C =12393.325050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.285 3.715 4 H 0.056 0.944 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.696 5.696 17 C 0.137 3.863 18 C -0.093 4.093 19 C -0.129 4.129 20 C 0.107 3.893 21 C -0.157 4.157 22 C 0.073 3.927 23 N -0.253 5.253 24 N -0.406 5.406 25 C 0.167 3.833 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.046 4.046 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.401 0.599 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.195 0.805 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 9.409 15.348 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.183 3.817 4 H 0.074 0.926 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.392 3.608 15 O -0.453 6.453 16 N -0.344 5.344 17 C 0.040 3.960 18 C -0.116 4.116 19 C -0.151 4.151 20 C -0.007 4.007 21 C -0.165 4.165 22 C -0.125 4.125 23 N -0.065 5.065 24 N -0.197 5.197 25 C 0.065 3.935 26 C -0.219 4.219 27 C -0.220 4.220 28 C -0.069 4.069 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.235 0.765 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.211 0.789 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.826 9.704 14.368 24.160 hybrid contribution 2.562 -0.214 0.499 2.619 sum -14.263 9.490 14.868 22.684 Atomic orbital electron populations 1.21831 0.98032 0.98019 1.01520 1.21873 0.93049 0.99901 1.01231 1.18722 0.94358 0.88808 0.79834 0.92618 1.21199 0.90683 1.44089 1.01424 0.92128 1.24883 0.98416 0.95088 0.95201 1.69970 1.35117 1.43257 1.03358 0.86478 0.85025 0.78373 0.77480 1.20579 1.21128 1.19880 1.45817 1.13220 1.58698 1.19305 1.16118 0.83818 0.78870 0.81962 1.90899 1.50797 1.64225 1.39419 1.42798 1.11429 1.62771 1.17409 1.17134 0.84014 0.94258 1.00547 1.20407 0.96773 0.94410 1.00044 1.19417 0.89865 1.01749 1.04078 1.18768 0.85363 0.97054 0.99515 1.19758 0.94228 0.98518 1.04034 1.25060 0.88867 0.98960 0.99580 1.76448 1.22541 1.00303 1.07194 1.48381 1.02283 1.25639 1.43362 1.21100 0.95436 0.84847 0.92097 1.22147 0.99280 1.01758 0.98702 1.22159 1.01212 0.99268 0.99371 1.20713 0.88308 0.99599 0.98319 0.92981 0.95927 0.93981 0.89897 0.94888 0.92566 0.78309 0.76485 0.85260 0.85961 0.78860 0.88602 0.91243 0.92187 0.91020 0.91020 0.92111 0.91225 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.54 37.16 0.32 -2.63 16 2 C -0.12 -2.85 5.50 -26.73 -0.15 -3.00 16 3 C 0.28 6.97 2.10 -69.08 -0.14 6.82 16 4 H 0.06 1.61 7.55 -51.93 -0.39 1.22 16 5 C -0.54 -13.83 8.67 -34.44 -0.30 -14.13 16 6 H 0.06 1.50 7.72 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 8 N -0.88 -24.58 11.98 55.43 0.66 -23.92 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.72 -14.29 5.04 -59.81 -0.30 -14.59 16 14 C 0.69 13.32 6.93 -86.91 -0.60 12.72 16 15 O -0.58 -13.04 11.07 5.29 0.06 -12.99 16 16 N -0.70 -10.22 5.36 -14.21 -0.08 -10.30 16 17 C 0.14 2.01 6.30 -83.65 -0.53 1.48 16 18 C -0.09 -1.09 9.87 -39.73 -0.39 -1.49 16 19 C -0.13 -1.46 9.77 -39.82 -0.39 -1.85 16 20 C 0.11 1.42 6.87 -84.10 -0.58 0.84 16 21 C -0.16 -2.30 6.36 -105.21 -0.67 -2.97 16 22 C 0.07 0.96 12.28 -15.14 -0.19 0.77 16 23 N -0.25 -3.37 12.22 31.87 0.39 -2.98 16 24 N -0.41 -4.96 3.33 -52.20 -0.17 -5.13 16 25 C 0.17 1.45 3.68 -67.93 -0.25 1.20 16 26 C -0.16 -1.19 9.44 37.16 0.35 -0.84 16 27 C -0.16 -1.27 9.44 37.16 0.35 -0.92 16 28 C -0.05 -0.73 8.73 -39.02 -0.34 -1.07 16 29 H 0.05 1.21 7.91 -51.93 -0.41 0.80 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.88 5.62 -51.93 -0.29 0.59 16 32 H 0.08 2.16 6.63 -51.93 -0.34 1.81 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.38 6.53 8.54 -40.82 -0.35 6.18 16 36 H 0.40 4.47 8.83 -40.82 -0.36 4.11 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.03 7.60 -52.49 -0.40 0.63 16 39 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.10 0.67 7.40 -51.93 -0.38 0.29 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.15 2.62 6.30 -52.49 -0.33 2.28 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -31.78 383.19 -9.31 -41.09 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.03 Total: 11.06 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.60 Total: -3.36 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.50 Total: -56.92 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.06 Total: -12.99 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.78 -9.31 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.433 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds