Wall clock time and date at job start Tue Mar 31 2020 15:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47038 * 2 1 4 4 H 1.09003 * 109.46918 * 306.12735 * 3 2 1 5 5 C 1.50698 * 109.47320 * 186.12384 * 3 2 1 6 6 H 1.08001 * 119.99695 * 245.43598 * 5 3 2 7 7 C 1.37871 * 120.00013 * 65.43356 * 5 3 2 8 8 N 1.31520 * 120.00077 * 5.75927 * 7 5 3 9 9 Si 1.86804 * 120.00021 * 185.75396 * 7 5 3 10 10 H 1.48505 * 109.46779 * 94.99932 * 9 7 5 11 11 H 1.48496 * 109.47289 * 214.99701 * 9 7 5 12 12 H 1.48499 * 109.46910 * 334.99904 * 9 7 5 13 13 N 1.46500 * 109.46964 * 66.12219 * 3 2 1 14 14 C 1.34781 * 120.00044 * 274.99881 * 13 3 2 15 15 O 1.21587 * 119.99982 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99920 * 179.97438 * 14 13 3 17 17 C 1.40164 * 120.00010 * 184.87791 * 16 14 13 18 18 C 1.39524 * 119.83019 * 212.15757 * 17 16 14 19 19 C 1.36484 * 120.75052 * 180.02562 * 18 17 16 20 20 C 1.39294 * 120.08767 * 359.97438 * 19 18 17 21 21 C 1.40781 * 119.63143 * 0.15837 * 20 19 18 22 22 C 1.45940 * 106.34631 * 180.25222 * 21 20 19 23 23 N 1.30252 * 107.80293 * 359.76615 * 22 21 20 24 24 N 1.37215 * 133.66694 * 179.97438 * 20 19 18 25 25 C 1.46494 * 125.47362 * 0.02562 * 24 20 19 26 26 C 1.53001 * 109.47448 * 239.71767 * 25 24 20 27 27 C 1.53007 * 109.47046 * 119.71815 * 25 24 20 28 28 C 1.38019 * 119.82781 * 32.52705 * 17 16 14 29 29 H 1.09003 * 109.47296 * 60.00099 * 1 2 3 30 30 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47085 * 299.99886 * 1 2 3 32 32 H 1.08994 * 109.47150 * 240.00076 * 2 1 3 33 33 H 1.08995 * 109.47399 * 119.99599 * 2 1 3 34 34 H 0.96998 * 119.99635 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00009 * 94.99927 * 13 3 2 36 36 H 0.97000 * 120.00034 * 4.88816 * 16 14 13 37 37 H 1.07993 * 119.62759 * 359.97374 * 18 17 16 38 38 H 1.07998 * 119.95936 * 180.02562 * 19 18 17 39 39 H 1.07995 * 126.09676 * 179.74996 * 22 21 20 40 40 H 1.09001 * 109.47387 * 359.72036 * 25 24 20 41 41 H 1.09001 * 109.47045 * 300.00478 * 26 25 24 42 42 H 1.09001 * 109.47030 * 59.99706 * 26 25 24 43 43 H 1.08996 * 109.46943 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46766 * 180.02562 * 27 25 24 45 45 H 1.08999 * 109.46600 * 299.99939 * 27 25 24 46 46 H 1.08996 * 109.46818 * 60.00367 * 27 25 24 47 47 H 1.07999 * 120.26397 * 359.52466 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5899 1.9870 -0.8301 5 6 3.5394 1.4453 -0.1516 6 1 4.1628 1.8047 0.6538 7 6 4.1151 0.9891 -1.3183 8 7 3.3565 0.6582 -2.3404 9 14 5.9728 0.8412 -1.4474 10 1 6.3827 -0.5480 -1.1192 11 1 6.4006 1.1697 -2.8309 12 1 6.6118 1.7840 -0.4946 13 7 1.6757 2.0893 1.2630 14 6 0.4607 2.6554 1.4043 15 8 -0.3331 2.6289 0.4837 16 7 0.1253 3.2499 2.5665 17 6 -1.1719 3.7480 2.7500 18 6 -1.3762 4.8758 3.5458 19 6 -2.6313 5.3764 3.7377 20 6 -3.7275 4.7624 3.1364 21 6 -3.5331 3.6223 2.3338 22 6 -4.8536 3.2281 1.8534 23 7 -5.7221 4.0661 2.3434 24 7 -5.0755 5.0188 3.1374 25 6 -5.7313 6.1178 3.8502 26 6 -6.7434 5.5478 4.8461 27 6 -6.4551 7.0171 2.8460 28 6 -2.2415 3.1159 2.1489 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.7617 0.3376 -3.1613 35 1 2.3088 2.1101 1.9976 36 1 0.7817 3.3332 3.2758 37 1 -0.5317 5.3575 4.0159 38 1 -2.7746 6.2503 4.3559 39 1 -5.0717 2.3912 1.2067 40 1 -4.9828 6.7010 4.3865 41 1 -7.4919 4.9646 4.3098 42 1 -6.2278 4.9071 5.5615 43 1 -7.2316 6.3656 5.3761 44 1 -6.9427 7.8351 3.3764 45 1 -5.7340 7.4232 2.1365 46 1 -7.2037 6.4339 2.3097 47 1 -2.0818 2.2441 1.5318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613855201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:02 Heat of formation + Delta-G solvation = 34.269028 kcal Electronic energy + Delta-G solvation = -27925.106666 eV Core-core repulsion = 24108.313662 eV Total energy + Delta-G solvation = -3816.793004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28743 -41.21563 -38.63076 -36.91028 -36.35636 -35.11620 -34.22062 -32.82879 -32.00985 -30.75616 -29.34117 -28.37321 -28.17982 -25.13870 -24.31827 -23.90380 -23.14617 -22.02370 -21.29914 -20.62204 -19.67076 -18.75199 -18.34371 -17.74972 -17.02399 -16.68890 -16.38673 -16.09499 -15.78521 -15.59177 -15.42971 -15.09606 -14.75462 -14.58665 -14.46890 -14.08785 -13.91029 -13.88116 -13.48255 -13.24264 -13.19611 -13.00216 -12.90172 -12.84159 -12.61508 -12.39281 -12.30805 -12.16866 -12.15945 -12.04084 -11.63715 -11.55656 -11.26487 -11.03291 -10.93262 -10.53296 -10.42542 -9.64926 -9.47805 -8.35767 -8.15690 -6.29791 0.00924 0.50086 1.46126 1.46743 1.47237 1.55515 1.57514 1.90057 2.29909 2.45042 2.91770 3.16448 3.43433 3.50277 3.68376 3.85470 4.00651 4.06286 4.14123 4.21428 4.38211 4.51523 4.52753 4.59322 4.68143 4.69114 4.75209 4.76816 4.82782 4.92776 5.01301 5.12781 5.20037 5.23375 5.24041 5.26854 5.37799 5.45541 5.50954 5.55738 5.58402 5.65048 5.78560 5.91635 6.03225 6.12408 6.21969 6.38004 6.67605 6.80155 7.34874 7.39044 7.81743 8.92558 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.002342 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.035877 B =11953.139186 C =12393.325050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.295 3.705 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.614 6.614 16 N -0.675 5.675 17 C 0.119 3.881 18 C -0.084 4.084 19 C -0.117 4.117 20 C 0.098 3.902 21 C -0.182 4.182 22 C 0.059 3.941 23 N -0.265 5.265 24 N -0.402 5.402 25 C 0.154 3.846 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.069 4.069 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.420 0.580 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.209 0.791 40 H 0.122 0.878 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 11.395 18.481 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.191 3.809 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.494 6.494 16 N -0.325 5.325 17 C 0.023 3.977 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.016 4.016 21 C -0.191 4.191 22 C -0.138 4.138 23 N -0.078 5.078 24 N -0.193 5.193 25 C 0.054 3.946 26 C -0.212 4.212 27 C -0.215 4.215 28 C -0.093 4.093 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.258 0.742 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.226 0.774 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.317 11.722 17.585 26.700 hybrid contribution 2.256 -0.735 -0.422 2.410 sum -14.061 10.987 17.163 24.759 Atomic orbital electron populations 1.21651 0.96773 0.99014 1.00420 1.21723 0.94040 0.99171 1.00368 1.18253 0.93656 0.88803 0.80150 0.97977 1.21567 0.91427 1.43599 1.01768 0.90845 1.25768 1.03066 0.94784 0.94885 1.70126 1.37137 1.44354 1.03934 0.85392 0.79349 0.78671 0.77269 1.19922 1.21547 1.18568 1.45412 1.14075 1.58929 1.18428 1.16204 0.83050 0.78830 0.82753 1.90891 1.51773 1.65453 1.41279 1.42436 1.12148 1.61580 1.16316 1.17400 0.83117 0.95561 1.01659 1.20731 0.98255 0.92975 0.98695 1.19879 0.88766 1.02155 1.03102 1.19118 0.86419 0.96749 0.99356 1.19933 0.94157 0.99723 1.05251 1.25383 0.88610 0.99673 1.00094 1.76405 1.22966 1.00768 1.07647 1.48773 1.02081 1.25743 1.42714 1.21562 0.96424 0.84208 0.92389 1.22107 0.98540 1.02443 0.98141 1.22129 1.00504 0.99703 0.99151 1.20548 0.89743 0.99640 0.99396 0.95638 0.93716 0.93522 0.92745 0.93481 0.92706 0.76365 0.74158 0.81585 0.81987 0.77404 0.86069 0.92935 0.92813 0.88068 0.87991 0.93286 0.92925 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.54 71.98 0.61 -4.81 16 2 C -0.11 -5.49 5.50 30.60 0.17 -5.32 16 3 C 0.30 14.89 2.10 44.25 0.09 14.98 16 4 H 0.00 0.14 7.55 -2.39 -0.02 0.12 16 5 C -0.55 -28.32 8.67 25.60 0.22 -28.10 16 6 H 0.07 3.54 7.72 -2.91 -0.02 3.52 16 7 C 0.02 0.81 5.21 84.65 0.44 1.25 16 8 N -0.92 -52.90 11.98 21.45 0.26 -52.64 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 13 N -0.72 -28.58 5.04 -461.39 -2.32 -30.90 16 14 C 0.69 27.01 6.93 179.05 1.24 28.25 16 15 O -0.61 -29.19 11.07 -3.99 -0.04 -29.24 16 16 N -0.67 -19.21 5.36 -317.13 -1.70 -20.91 16 17 C 0.12 3.37 6.30 38.07 0.24 3.61 16 18 C -0.08 -1.71 9.87 22.17 0.22 -1.49 16 19 C -0.12 -2.25 9.77 22.11 0.22 -2.04 16 20 C 0.10 2.47 6.87 39.18 0.27 2.74 16 21 C -0.18 -5.45 6.36 -20.25 -0.13 -5.58 16 22 C 0.06 1.62 12.28 86.92 1.07 2.69 16 23 N -0.27 -7.12 12.22 -53.08 -0.65 -7.76 16 24 N -0.40 -9.31 3.33 -319.06 -1.06 -10.37 16 25 C 0.15 2.27 3.68 45.00 0.17 2.44 16 26 C -0.15 -1.92 9.44 71.98 0.68 -1.24 16 27 C -0.16 -2.13 9.44 71.98 0.68 -1.45 16 28 C -0.07 -2.29 8.73 22.63 0.20 -2.09 16 29 H 0.02 1.23 7.91 -2.39 -0.02 1.21 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 2.02 5.62 -2.38 -0.01 2.01 16 32 H 0.05 2.94 6.63 -2.39 -0.02 2.92 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.40 13.18 8.54 -92.71 -0.79 12.39 16 36 H 0.42 8.44 8.83 -92.71 -0.82 7.62 16 37 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.82 7.60 -2.91 -0.02 1.80 16 39 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.12 1.18 7.40 -2.39 -0.02 1.16 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.12 4.48 6.30 -2.91 -0.02 4.46 16 Total: -1.00 -73.12 383.19 2.28 -70.84 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.61 Total: 33.39 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.38 Total: 3.84 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -5.48 Total: -122.59 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.12 2.28 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.106 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds