Wall clock time and date at job start Tue Mar 31 2020 15:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 H 1.09001 * 109.47176 * 54.99823 * 3 2 1 5 5 C 1.50694 * 109.47538 * 175.00098 * 3 2 1 6 6 H 1.07998 * 120.00386 * 119.99810 * 5 3 2 7 7 C 1.37878 * 119.99930 * 300.00240 * 5 3 2 8 8 N 1.31522 * 119.99900 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00281 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47154 * 89.99854 * 9 7 5 11 11 H 1.48500 * 109.46997 * 209.99983 * 9 7 5 12 12 H 1.48492 * 109.46759 * 329.99627 * 9 7 5 13 13 N 1.46500 * 109.46872 * 295.00138 * 3 2 1 14 14 C 1.34784 * 120.00222 * 84.99967 * 13 3 2 15 15 O 1.21585 * 119.99705 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99844 * 179.97438 * 14 13 3 17 17 C 1.40165 * 119.99713 * 185.31550 * 16 14 13 18 18 C 1.39531 * 119.82794 * 213.38292 * 17 16 14 19 19 C 1.36486 * 120.74651 * 180.02562 * 18 17 16 20 20 C 1.39285 * 120.09129 * 359.97438 * 19 18 17 21 21 C 1.40783 * 119.63266 * 0.15062 * 20 19 18 22 22 C 1.45941 * 106.34802 * 180.26217 * 21 20 19 23 23 N 1.30245 * 107.80270 * 359.76163 * 22 21 20 24 24 N 1.37217 * 133.67420 * 179.97438 * 20 19 18 25 25 C 1.46503 * 125.46639 * 0.02562 * 24 20 19 26 26 C 1.52998 * 109.47260 * 239.71846 * 25 24 20 27 27 C 1.53001 * 109.47109 * 119.71591 * 25 24 20 28 28 C 1.38020 * 119.82714 * 33.73604 * 17 16 14 29 29 H 1.08997 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46735 * 300.00345 * 1 2 3 31 31 H 1.08997 * 109.47019 * 60.00296 * 1 2 3 32 32 H 1.08997 * 109.46735 * 239.99655 * 2 1 3 33 33 H 1.08997 * 109.47019 * 119.99704 * 2 1 3 34 34 H 0.97001 * 120.00002 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00171 * 264.99942 * 13 3 2 36 36 H 0.96997 * 119.99970 * 5.32381 * 16 14 13 37 37 H 1.07992 * 119.62691 * 0.02562 * 18 17 16 38 38 H 1.08000 * 119.95315 * 179.97438 * 19 18 17 39 39 H 1.07995 * 126.09869 * 179.74860 * 22 21 20 40 40 H 1.09004 * 109.47153 * 359.71953 * 25 24 20 41 41 H 1.09002 * 109.47313 * 59.99692 * 26 25 24 42 42 H 1.08993 * 109.47155 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.46907 * 299.99628 * 26 25 24 44 44 H 1.09000 * 109.46934 * 180.02562 * 27 25 24 45 45 H 1.09005 * 109.47084 * 300.00002 * 27 25 24 46 46 H 1.08994 * 109.47274 * 59.99902 * 27 25 24 47 47 H 1.07998 * 120.26779 * 359.51949 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1545 12 1 6.6131 0.8395 0.0270 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6318 -0.4321 16 7 0.0788 3.2673 -2.5185 17 6 -1.1408 3.9530 -2.6023 18 6 -1.8464 3.9696 -3.8059 19 6 -3.0354 4.6318 -3.9086 20 6 -3.5596 5.3012 -2.8054 21 6 -2.8546 5.2931 -1.5868 22 6 -3.6571 6.0644 -0.6428 23 7 -4.7207 6.4788 -1.2700 24 7 -4.6988 6.0371 -2.5968 25 6 -5.7298 6.3106 -3.6010 26 6 -5.8599 7.8220 -3.7999 27 6 -7.0683 5.7416 -3.1258 28 6 -1.6340 4.6143 -1.4958 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0604 2.9503 35 1 2.2719 2.1231 -1.9978 36 1 0.6663 3.2267 -3.2892 37 1 -1.4472 3.4527 -4.6660 38 1 -3.5707 4.6367 -4.8467 39 1 -3.4128 6.2569 0.3913 40 1 -5.4508 5.8426 -4.5451 41 1 -4.9064 8.2274 -4.1385 42 1 -6.6273 8.0255 -4.5467 43 1 -6.1391 8.2900 -2.8559 44 1 -7.8353 5.9447 -3.8732 45 1 -6.9755 4.6648 -2.9841 46 1 -7.3473 6.2095 -2.1818 47 1 -1.0879 4.5990 -0.5642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613855202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:05 Heat of formation + Delta-G solvation = 35.837903 kcal Electronic energy + Delta-G solvation = -27886.129308 eV Core-core repulsion = 24069.404336 eV Total energy + Delta-G solvation = -3816.724972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29144 -41.21096 -38.64635 -36.92708 -36.36094 -35.11637 -34.22811 -32.74519 -32.04071 -30.75509 -29.37389 -28.35852 -28.18028 -25.12223 -24.35966 -23.91132 -23.12728 -21.99432 -21.28780 -20.62031 -19.67448 -18.74801 -18.33490 -17.77834 -17.11925 -16.55803 -16.42665 -16.11145 -15.78717 -15.61579 -15.46316 -15.03908 -14.67625 -14.51870 -14.49684 -14.25332 -13.96438 -13.83140 -13.50064 -13.20047 -13.15158 -12.99651 -12.86138 -12.83778 -12.66943 -12.39943 -12.30678 -12.20662 -12.08636 -12.01175 -11.63113 -11.56334 -11.27130 -11.05268 -10.95822 -10.50716 -10.42134 -9.65293 -9.47096 -8.37223 -8.13160 -6.29952 0.00178 0.49262 1.45802 1.47104 1.47450 1.54714 1.57672 1.90066 2.30212 2.44862 2.90837 3.16492 3.43116 3.50237 3.67982 3.84760 4.00576 4.05881 4.14003 4.21033 4.37512 4.52184 4.53165 4.61062 4.67776 4.68413 4.75279 4.78890 4.82752 4.92597 5.01480 5.10508 5.19669 5.23529 5.24153 5.27510 5.38545 5.46150 5.49731 5.55905 5.59651 5.65966 5.81605 5.92107 6.02525 6.20305 6.22098 6.37683 6.66872 6.78734 7.34743 7.39290 7.81757 8.92168 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.002312 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.260995 B =12106.109454 C =12158.665424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.614 6.614 16 N -0.676 5.676 17 C 0.120 3.880 18 C -0.083 4.083 19 C -0.116 4.116 20 C 0.099 3.901 21 C -0.182 4.182 22 C 0.058 3.942 23 N -0.265 5.265 24 N -0.402 5.402 25 C 0.154 3.846 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.069 4.069 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.420 0.580 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.209 0.791 40 H 0.122 0.878 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.102 0.898 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 10.826 -18.291 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.494 6.494 16 N -0.326 5.326 17 C 0.024 3.976 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.015 4.015 21 C -0.191 4.191 22 C -0.138 4.138 23 N -0.077 5.077 24 N -0.193 5.193 25 C 0.054 3.946 26 C -0.213 4.213 27 C -0.215 4.215 28 C -0.093 4.093 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.258 0.742 37 H 0.185 0.815 38 H 0.181 0.819 39 H 0.225 0.775 40 H 0.140 0.860 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.055 11.373 -17.268 26.803 hybrid contribution 2.272 -0.618 0.401 2.389 sum -14.783 10.755 -16.866 24.873 Atomic orbital electron populations 1.21630 0.97114 0.98744 1.00165 1.21799 0.93568 0.99360 1.01248 1.18240 0.93365 0.88763 0.80318 0.98357 1.21566 0.91370 1.38748 1.06659 0.90944 1.25753 1.03179 0.94472 0.95096 1.70057 1.36998 1.38426 1.09831 0.85384 0.79277 0.77303 0.78586 1.20589 1.21106 1.18389 1.45419 1.13899 1.59151 1.18398 1.16200 0.82867 0.78566 0.83169 1.90893 1.52654 1.65780 1.40120 1.42436 1.20652 1.55390 1.14084 1.17387 0.88251 0.96573 0.95410 1.20740 0.93627 0.99271 0.96860 1.19889 0.96784 1.00052 0.97110 1.19114 0.89109 0.97061 0.96262 1.19923 0.97968 1.06519 0.94678 1.25377 0.91010 0.96879 1.00579 1.76401 1.21152 1.19254 0.90941 1.48781 1.18156 1.44607 1.07735 1.21569 0.86160 0.98100 0.88749 1.22109 1.03023 0.93147 1.02982 1.22128 0.95957 1.00592 1.02806 1.20494 0.94931 0.94950 0.98907 0.93978 0.95755 0.93923 0.93996 0.91052 0.92657 0.76373 0.74155 0.81478 0.81890 0.77480 0.86000 0.92830 0.88040 0.92964 0.87969 0.93238 0.92956 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.76 16 3 C 0.30 15.04 2.24 44.24 0.10 15.13 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.86 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 13 N -0.72 -28.75 5.03 -461.41 -2.32 -31.07 16 14 C 0.69 27.13 6.86 179.05 1.23 28.36 16 15 O -0.61 -29.33 11.17 -3.98 -0.04 -29.37 16 16 N -0.68 -19.30 5.35 -317.12 -1.70 -21.00 16 17 C 0.12 3.41 6.27 38.07 0.24 3.65 16 18 C -0.08 -1.66 9.87 22.17 0.22 -1.44 16 19 C -0.12 -2.22 9.77 22.11 0.22 -2.00 16 20 C 0.10 2.50 6.87 39.18 0.27 2.76 16 21 C -0.18 -5.51 6.36 -20.24 -0.13 -5.64 16 22 C 0.06 1.62 12.28 86.92 1.07 2.69 16 23 N -0.27 -7.15 12.22 -53.08 -0.65 -7.80 16 24 N -0.40 -9.31 3.33 -319.06 -1.06 -10.37 16 25 C 0.15 2.26 3.68 44.99 0.17 2.42 16 26 C -0.15 -1.93 9.44 71.98 0.68 -1.25 16 27 C -0.16 -2.11 9.44 71.98 0.68 -1.43 16 28 C -0.07 -2.31 8.72 22.64 0.20 -2.11 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 31 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.40 13.31 8.56 -92.71 -0.79 12.51 16 36 H 0.42 8.46 8.83 -92.71 -0.82 7.65 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.16 1.78 7.60 -2.91 -0.02 1.76 16 39 H 0.21 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.12 1.16 7.40 -2.38 -0.02 1.14 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.11 4.39 6.41 -2.91 -0.02 4.38 16 Total: -1.00 -72.70 382.15 2.27 -70.44 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.61 Total: 33.63 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.38 Total: 3.66 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.49 Total: -122.09 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.04 Total: -29.37 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -72.70 2.27 -70.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.274 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds