Wall clock time and date at job start Tue Mar 31 2020 15:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 N 1.46499 * 109.46937 * 180.02562 * 3 2 1 5 5 C 1.36488 * 124.78344 * 89.97399 * 4 3 2 6 6 C 1.50705 * 125.41340 * 359.96234 * 5 4 3 7 7 C 1.34347 * 109.16827 * 179.97438 * 5 4 3 8 8 C 1.46900 * 106.35681 * 359.97438 * 7 5 4 9 9 C 1.46451 * 127.06319 * 179.97438 * 8 7 5 10 10 O 1.21341 * 119.99975 * 180.02562 * 9 8 7 11 11 C 1.50703 * 119.99933 * 0.02916 * 9 8 7 12 12 N 1.46497 * 109.46909 * 179.97438 * 11 9 8 13 13 C 1.35317 * 125.87010 * 125.00233 * 12 11 9 14 14 C 1.35348 * 106.17735 * 180.24864 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 C 1.50705 * 109.47409 * 124.99927 * 15 14 13 17 17 H 1.07996 * 119.99541 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99797 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99516 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00478 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46867 * 90.00149 * 20 18 16 22 22 H 1.48500 * 109.47005 * 210.00226 * 20 18 16 23 23 H 1.48495 * 109.46855 * 330.00338 * 20 18 16 24 24 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 25 25 N 1.28636 * 108.88665 * 0.37294 * 24 14 13 26 26 C 1.34495 * 124.77131 * 270.28341 * 4 3 2 27 27 C 1.50695 * 125.92289 * 0.04411 * 26 4 3 28 28 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47284 * 299.99494 * 1 2 3 30 30 H 1.08990 * 109.47307 * 60.00544 * 1 2 3 31 31 H 1.09002 * 109.46965 * 239.99860 * 2 1 3 32 32 H 1.08995 * 109.46998 * 120.00121 * 2 1 3 33 33 H 1.08993 * 109.47266 * 60.00226 * 3 2 1 34 34 H 1.09004 * 109.46879 * 299.99690 * 3 2 1 35 35 H 1.09000 * 109.46876 * 270.01522 * 6 5 4 36 36 H 1.08997 * 109.47262 * 30.01288 * 6 5 4 37 37 H 1.08993 * 109.47052 * 150.02038 * 6 5 4 38 38 H 1.08001 * 126.82403 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.46919 * 60.00378 * 11 9 8 40 40 H 1.08996 * 109.46955 * 299.99338 * 11 9 8 41 41 H 1.08002 * 126.90702 * 359.97438 * 13 12 11 42 42 H 1.09009 * 109.46604 * 244.99136 * 15 14 13 43 43 H 1.08993 * 109.47327 * 4.99084 * 15 14 13 44 44 H 0.96998 * 119.99491 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47023 * 270.17446 * 27 26 4 46 46 H 1.08997 * 109.47330 * 30.17710 * 27 26 4 47 47 H 1.09001 * 109.47251 * 150.17505 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2831 1.4422 -1.1219 6 6 3.7720 1.4410 -2.5397 7 6 5.5772 1.4429 -0.7609 8 6 5.5968 1.4444 0.7080 9 6 6.7771 1.4450 1.5750 10 8 6.6440 1.4458 2.7811 11 6 8.1570 1.4448 0.9691 12 7 9.1593 1.4462 2.0375 13 6 10.1608 0.5485 2.1863 14 6 10.8384 0.9201 3.2975 15 6 12.0422 0.2348 3.8910 16 6 13.1660 1.2285 4.0348 17 1 13.0230 2.2537 3.7268 18 6 14.3770 0.8285 4.5586 19 7 15.3579 1.6956 4.6836 20 14 14.6247 -0.9449 5.0906 21 1 15.1398 -1.7379 3.9456 22 1 15.6025 -0.9948 6.2072 23 1 13.3285 -1.5118 5.5420 24 7 10.2313 2.0173 3.7634 25 7 9.2385 2.3014 2.9964 26 6 4.2725 1.4369 1.1038 27 6 3.7749 1.4287 2.5262 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.6491 0.4130 -2.8806 36 1 2.8113 1.9544 -2.5800 37 1 4.4858 1.9544 -3.1837 38 1 6.4330 1.4433 -1.4196 39 1 8.2830 2.3345 0.3521 40 1 8.2833 0.5545 0.3532 41 1 10.3736 -0.2973 1.5493 42 1 11.7849 -0.1671 4.8711 43 1 12.3571 -0.5778 3.2364 44 1 16.2098 1.4143 5.0524 45 1 3.6513 2.4544 2.8738 46 1 2.8167 0.9113 2.5730 47 1 4.4967 0.9146 3.1608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000640829903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:59 Heat of formation + Delta-G solvation = 99.501536 kcal Electronic energy + Delta-G solvation = -27135.981373 eV Core-core repulsion = 23322.017063 eV Total energy + Delta-G solvation = -3813.964310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47021 -41.87027 -38.95625 -35.67405 -34.36744 -33.11268 -32.96712 -31.82845 -31.15498 -29.68913 -28.93849 -27.77451 -26.44839 -25.17720 -23.08524 -22.85821 -22.17307 -21.27241 -20.45479 -19.44553 -18.66871 -17.04231 -16.76235 -16.57732 -16.16468 -15.96933 -15.66530 -14.96190 -14.74256 -14.39104 -14.29611 -14.13263 -13.92968 -13.78776 -13.65078 -13.41409 -13.12510 -12.97087 -12.84169 -12.68674 -12.58940 -12.48058 -12.39907 -12.07455 -11.93717 -11.77287 -11.71274 -11.48646 -11.00512 -10.54645 -10.46762 -10.10195 -9.94302 -9.69250 -9.23314 -9.15890 -8.98757 -8.45402 -8.33629 -8.11465 -5.91803 -3.89002 1.15592 1.92535 2.23408 2.36717 2.78753 2.98108 3.37783 3.45931 3.49256 3.57133 3.88678 4.04031 4.11410 4.24078 4.40225 4.49861 4.53982 4.60329 4.68310 4.70901 4.75472 4.90027 4.97868 5.01330 5.08003 5.13944 5.19191 5.24981 5.28127 5.30573 5.36800 5.39654 5.41097 5.51738 5.54669 5.68509 5.83123 5.92521 6.07507 6.34108 6.43969 6.72319 6.83159 6.97941 7.17542 7.22314 7.32498 7.59496 7.82355 8.66973 9.17220 9.41073 9.67682 11.21837 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.002022 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.867235 B =13844.736255 C =14085.013001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.095 3.905 4 N -0.433 5.433 5 C 0.008 3.992 6 C -0.084 4.084 7 C -0.154 4.154 8 C -0.262 4.262 9 C 0.413 3.587 10 O -0.436 6.436 11 C 0.084 3.916 12 N -0.299 5.299 13 C -0.084 4.084 14 C 0.038 3.962 15 C 0.060 3.940 16 C -0.504 4.504 17 H 0.076 0.924 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.876 3.124 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 N -0.256 5.256 25 N -0.082 5.082 26 C 0.116 3.884 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.182 0.818 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.262 0.738 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.661 -4.661 -18.352 38.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C -0.027 4.027 4 N -0.109 5.109 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.178 4.178 8 C -0.270 4.270 9 C 0.289 3.711 10 O -0.310 6.310 11 C -0.039 4.039 12 N -0.095 5.095 13 C -0.232 4.232 14 C -0.098 4.098 15 C 0.021 3.979 16 C -0.542 4.542 17 H 0.095 0.905 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 N -0.124 5.124 25 N -0.061 5.061 26 C -0.001 4.001 27 C -0.155 4.155 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.199 0.801 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -34.511 -3.370 -17.072 38.650 hybrid contribution 0.667 -1.833 -0.622 2.048 sum -33.844 -5.204 -17.694 38.543 Atomic orbital electron populations 1.21705 0.94182 1.02677 1.02266 1.21916 0.96875 0.95518 1.03589 1.22046 0.77083 0.98795 1.04747 1.43650 1.06268 1.55845 1.05182 1.20184 0.90451 1.10678 0.88594 1.20343 1.01470 1.02668 0.89664 1.21827 0.95452 1.07604 0.92876 1.20692 0.92047 1.20507 0.93755 1.21276 0.88492 0.72855 0.88500 1.90630 1.88126 1.35993 1.16206 1.22130 0.86346 1.06851 0.88615 1.46783 1.21523 1.20388 1.20767 1.23269 0.94692 1.00793 1.04416 1.22446 0.99014 0.94352 0.94027 1.18139 0.88768 0.95325 0.95707 1.20945 0.94488 0.97271 1.41496 0.90543 1.24978 0.95840 0.97272 0.95341 1.69911 1.03762 1.34356 1.46104 0.86829 0.78403 0.85775 0.78637 1.20279 1.21299 1.18879 1.75110 1.02448 1.13792 1.21023 1.78296 1.16598 1.14734 0.96504 1.20821 0.89681 1.00458 0.89158 1.20619 1.01878 1.03698 0.89339 0.91818 0.92229 0.92291 0.91026 0.91041 0.88935 0.88849 0.91029 0.91889 0.89923 0.83299 0.85876 0.85221 0.80113 0.94467 0.95175 0.92780 0.90076 0.91669 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 37.16 0.37 0.00 16 2 C -0.14 -0.53 6.26 -26.73 -0.17 -0.70 16 3 C 0.09 0.40 5.35 -4.04 -0.02 0.38 16 4 N -0.43 -3.19 2.68 -107.62 -0.29 -3.48 16 5 C 0.01 0.06 6.84 -81.89 -0.56 -0.50 16 6 C -0.08 -0.34 10.05 36.01 0.36 0.02 16 7 C -0.15 -1.28 10.58 -37.45 -0.40 -1.68 16 8 C -0.26 -2.85 6.29 -103.09 -0.65 -3.50 16 9 C 0.41 5.54 7.13 -31.00 -0.22 5.32 16 10 O -0.44 -7.61 14.21 5.50 0.08 -7.53 16 11 C 0.08 1.01 6.50 -5.19 -0.03 0.98 16 12 N -0.30 -5.45 3.20 -62.44 -0.20 -5.65 16 13 C -0.08 -1.59 11.49 -17.05 -0.20 -1.78 16 14 C 0.04 0.92 6.44 -82.78 -0.53 0.39 16 15 C 0.06 1.53 4.62 -29.04 -0.13 1.39 16 16 C -0.50 -15.24 9.64 -34.44 -0.33 -15.57 16 17 H 0.08 2.58 7.98 -52.49 -0.42 2.16 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -28.80 13.96 55.43 0.77 -28.02 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 N -0.26 -6.61 12.40 33.29 0.41 -6.20 16 25 N -0.08 -1.87 12.13 60.35 0.73 -1.14 16 26 C 0.12 1.14 6.94 -81.43 -0.56 0.57 16 27 C -0.10 -0.87 9.27 36.00 0.33 -0.53 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.09 0.33 7.51 -51.93 -0.39 -0.06 16 34 H 0.09 0.26 6.88 -51.93 -0.36 -0.09 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.19 6.92 -51.93 -0.36 -0.17 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.13 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 42 H 0.04 0.97 7.20 -51.92 -0.37 0.59 16 43 H 0.03 0.70 7.55 -51.93 -0.39 0.31 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 47 H 0.10 1.12 6.53 -51.93 -0.34 0.78 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -39.90 393.45 -7.33 -47.24 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -7.26 Total: -5.13 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.84 Total: -13.31 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 1.43 Total: -44.49 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.90 -7.33 -47.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640829903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.738 kcal (2) G-P(sol) polarization free energy of solvation -39.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds