Wall clock time and date at job start Tue Mar 31 2020 15:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 N 1.46499 * 109.46937 * 180.02562 * 3 2 1 5 5 C 1.36488 * 124.78344 * 89.97399 * 4 3 2 6 6 C 1.50705 * 125.41340 * 359.96234 * 5 4 3 7 7 C 1.34347 * 109.16827 * 179.97438 * 5 4 3 8 8 C 1.46900 * 106.35681 * 359.97438 * 7 5 4 9 9 C 1.46451 * 127.06319 * 179.97438 * 8 7 5 10 10 O 1.21341 * 119.99975 * 180.02562 * 9 8 7 11 11 C 1.50703 * 119.99933 * 0.02916 * 9 8 7 12 12 N 1.46497 * 109.46909 * 179.97438 * 11 9 8 13 13 C 1.35317 * 125.87010 * 125.00233 * 12 11 9 14 14 C 1.35348 * 106.17735 * 180.24864 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 C 1.50705 * 109.47409 * 124.99927 * 15 14 13 17 17 H 1.07996 * 119.99541 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99797 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99516 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00478 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46867 * 90.00149 * 20 18 16 22 22 H 1.48500 * 109.47005 * 210.00226 * 20 18 16 23 23 H 1.48495 * 109.46855 * 330.00338 * 20 18 16 24 24 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 25 25 N 1.28636 * 108.88665 * 0.37294 * 24 14 13 26 26 C 1.34495 * 124.77131 * 270.28341 * 4 3 2 27 27 C 1.50695 * 125.92289 * 0.04411 * 26 4 3 28 28 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47284 * 299.99494 * 1 2 3 30 30 H 1.08990 * 109.47307 * 60.00544 * 1 2 3 31 31 H 1.09002 * 109.46965 * 239.99860 * 2 1 3 32 32 H 1.08995 * 109.46998 * 120.00121 * 2 1 3 33 33 H 1.08993 * 109.47266 * 60.00226 * 3 2 1 34 34 H 1.09004 * 109.46879 * 299.99690 * 3 2 1 35 35 H 1.09000 * 109.46876 * 270.01522 * 6 5 4 36 36 H 1.08997 * 109.47262 * 30.01288 * 6 5 4 37 37 H 1.08993 * 109.47052 * 150.02038 * 6 5 4 38 38 H 1.08001 * 126.82403 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.46919 * 60.00378 * 11 9 8 40 40 H 1.08996 * 109.46955 * 299.99338 * 11 9 8 41 41 H 1.08002 * 126.90702 * 359.97438 * 13 12 11 42 42 H 1.09009 * 109.46604 * 244.99136 * 15 14 13 43 43 H 1.08993 * 109.47327 * 4.99084 * 15 14 13 44 44 H 0.96998 * 119.99491 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.47023 * 270.17446 * 27 26 4 46 46 H 1.08997 * 109.47330 * 30.17710 * 27 26 4 47 47 H 1.09001 * 109.47251 * 150.17505 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2831 1.4422 -1.1219 6 6 3.7720 1.4410 -2.5397 7 6 5.5772 1.4429 -0.7609 8 6 5.5968 1.4444 0.7080 9 6 6.7771 1.4450 1.5750 10 8 6.6440 1.4458 2.7811 11 6 8.1570 1.4448 0.9691 12 7 9.1593 1.4462 2.0375 13 6 10.1608 0.5485 2.1863 14 6 10.8384 0.9201 3.2975 15 6 12.0422 0.2348 3.8910 16 6 13.1660 1.2285 4.0348 17 1 13.0230 2.2537 3.7268 18 6 14.3770 0.8285 4.5586 19 7 15.3579 1.6956 4.6836 20 14 14.6247 -0.9449 5.0906 21 1 15.1398 -1.7379 3.9456 22 1 15.6025 -0.9948 6.2072 23 1 13.3285 -1.5118 5.5420 24 7 10.2313 2.0173 3.7634 25 7 9.2385 2.3014 2.9964 26 6 4.2725 1.4369 1.1038 27 6 3.7749 1.4287 2.5262 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.6491 0.4130 -2.8806 36 1 2.8113 1.9544 -2.5800 37 1 4.4858 1.9544 -3.1837 38 1 6.4330 1.4433 -1.4196 39 1 8.2830 2.3345 0.3521 40 1 8.2833 0.5545 0.3532 41 1 10.3736 -0.2973 1.5493 42 1 11.7849 -0.1671 4.8711 43 1 12.3571 -0.5778 3.2364 44 1 16.2098 1.4143 5.0524 45 1 3.6513 2.4544 2.8738 46 1 2.8167 0.9113 2.5730 47 1 4.4967 0.9146 3.1608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000640829903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:58 Heat of formation + Delta-G solvation = 72.935854 kcal Electronic energy + Delta-G solvation = -27137.133347 eV Core-core repulsion = 23322.017063 eV Total energy + Delta-G solvation = -3815.116284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.05506 -42.48595 -40.01044 -36.05308 -35.98352 -34.94667 -33.64314 -33.13754 -32.40329 -30.48137 -29.98265 -29.43573 -27.04182 -25.80710 -25.09755 -23.72313 -22.72940 -22.48617 -21.87335 -20.43469 -19.45770 -18.88376 -18.05067 -17.82686 -17.10546 -16.53721 -16.40947 -16.24720 -15.77751 -15.72278 -15.55921 -15.24569 -14.96379 -14.69766 -14.32176 -14.20102 -14.10135 -14.01197 -13.88475 -13.53747 -13.42642 -13.26089 -13.01891 -12.97363 -12.86050 -12.77139 -12.42884 -12.31979 -12.30718 -12.09300 -11.90493 -11.75788 -11.61884 -11.46642 -11.23166 -10.72415 -10.51399 -9.84193 -9.62063 -8.96922 -8.22622 -6.27689 0.29112 0.78016 1.34751 1.41326 1.46162 1.49067 1.58399 1.79341 1.82750 2.17698 2.42685 2.97845 3.11154 3.61256 3.65729 3.70180 3.85171 3.88238 3.90274 4.05017 4.15314 4.23854 4.26371 4.30687 4.39755 4.43573 4.48611 4.55413 4.59301 4.70796 4.74898 4.75877 4.84537 4.88552 4.96142 5.06440 5.09180 5.11253 5.17647 5.28038 5.34820 5.34870 5.39161 5.63628 5.79012 5.81679 6.11449 6.29820 6.34882 6.63902 6.77104 7.33648 7.74341 8.95313 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.002022 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.867235 B =13844.736255 C =14085.013001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.088 3.912 4 N -0.428 5.428 5 C 0.009 3.991 6 C -0.082 4.082 7 C -0.162 4.162 8 C -0.289 4.289 9 C 0.413 3.587 10 O -0.492 6.492 11 C 0.072 3.928 12 N -0.284 5.284 13 C -0.048 4.048 14 C -0.011 4.011 15 C 0.068 3.932 16 C -0.518 4.518 17 H 0.017 0.983 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.960 3.040 21 H -0.252 1.252 22 H -0.286 1.286 23 H -0.245 1.245 24 N -0.315 5.315 25 N -0.109 5.109 26 C 0.103 3.897 27 C -0.094 4.094 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.174 0.826 39 H 0.150 0.850 40 H 0.181 0.819 41 H 0.238 0.762 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.267 0.733 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.857 -7.449 -21.703 42.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.032 4.032 4 N -0.103 5.103 5 C -0.098 4.098 6 C -0.140 4.140 7 C -0.184 4.184 8 C -0.297 4.297 9 C 0.293 3.707 10 O -0.370 6.370 11 C -0.048 4.048 12 N -0.079 5.079 13 C -0.197 4.197 14 C -0.150 4.150 15 C 0.029 3.971 16 C -0.556 4.556 17 H 0.035 0.965 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.782 3.218 21 H -0.176 1.176 22 H -0.212 1.212 23 H -0.169 1.169 24 N -0.182 5.182 25 N -0.088 5.088 26 C -0.016 4.016 27 C -0.151 4.151 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.191 0.809 39 H 0.168 0.832 40 H 0.199 0.801 41 H 0.255 0.745 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -36.773 -6.130 -20.480 42.535 hybrid contribution 1.176 -0.859 0.259 1.479 sum -35.597 -6.989 -20.221 41.532 Atomic orbital electron populations 1.21687 0.93052 1.02846 1.02945 1.21845 0.97731 0.94908 1.02772 1.22326 0.75289 0.99446 1.06139 1.43890 1.07427 1.54430 1.04585 1.20781 0.90324 1.08897 0.89812 1.20456 1.02325 1.03700 0.87469 1.22145 0.96948 1.07771 0.91567 1.20678 0.91556 1.22490 0.94969 1.21695 0.89772 0.71198 0.88037 1.90629 1.88807 1.39249 1.18353 1.22825 0.84116 1.10600 0.87299 1.47214 1.21700 1.18644 1.20326 1.23893 0.92622 1.00795 1.02437 1.22472 1.00244 0.95417 0.96824 1.17973 0.87880 0.94904 0.96361 1.21126 0.96793 0.95912 1.41767 0.96458 1.26091 0.95010 1.03406 0.94978 1.70096 1.04621 1.37492 1.47370 0.85520 0.79059 0.78431 0.78775 1.17643 1.21243 1.16883 1.75016 1.04093 1.15645 1.23407 1.78171 1.16306 1.16417 0.97912 1.20936 0.90093 1.00649 0.89959 1.20526 1.02189 1.03470 0.88929 0.91929 0.92009 0.91175 0.91155 0.92551 0.88373 0.86727 0.89977 0.90592 0.88835 0.80910 0.83226 0.80140 0.74539 0.95122 0.91868 0.92442 0.90311 0.89320 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 9.91 71.98 0.71 0.31 16 2 C -0.13 -0.74 6.26 30.60 0.19 -0.55 16 3 C 0.09 0.53 5.35 86.38 0.46 1.00 16 4 N -0.43 -5.42 2.68 -494.41 -1.32 -6.74 16 5 C 0.01 0.10 6.84 40.95 0.28 0.38 16 6 C -0.08 -0.34 10.05 71.24 0.72 0.38 16 7 C -0.16 -2.23 10.58 23.65 0.25 -1.97 16 8 C -0.29 -5.97 6.29 -18.87 -0.12 -6.09 16 9 C 0.41 10.89 7.13 27.83 0.20 11.09 16 10 O -0.49 -17.92 14.21 -3.22 -0.05 -17.97 16 11 C 0.07 1.55 6.50 85.63 0.56 2.10 16 12 N -0.28 -10.01 3.20 -351.47 -1.12 -11.13 16 13 C -0.05 -1.70 11.49 83.49 0.96 -0.74 16 14 C -0.01 -0.55 6.44 41.59 0.27 -0.28 16 15 C 0.07 3.46 4.62 29.10 0.13 3.60 16 16 C -0.52 -32.52 9.64 25.60 0.25 -32.28 16 17 H 0.02 1.24 7.98 -2.91 -0.02 1.21 16 18 C 0.00 0.06 5.47 84.65 0.46 0.53 16 19 N -0.96 -63.11 13.96 21.45 0.30 -62.81 16 20 Si 0.96 45.15 27.47 68.60 1.88 47.03 16 21 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.25 -10.73 6.54 99.48 0.65 -10.07 16 24 N -0.32 -17.02 12.40 -48.60 -0.60 -17.62 16 25 N -0.11 -5.11 12.13 37.02 0.45 -4.66 16 26 C 0.10 1.94 6.94 42.15 0.29 2.23 16 27 C -0.09 -1.71 9.27 71.23 0.66 -1.05 16 28 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.49 8.11 -2.39 -0.02 0.47 16 33 H 0.10 0.51 7.51 -2.39 -0.02 0.49 16 34 H 0.11 0.24 6.88 -2.38 -0.02 0.22 16 35 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.08 0.14 6.92 -2.39 -0.02 0.12 16 37 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.18 2.02 8.07 -2.39 -0.02 2.00 16 41 H 0.24 5.45 8.06 -2.91 -0.02 5.43 16 42 H 0.03 1.58 7.20 -2.38 -0.02 1.57 16 43 H 0.06 2.77 7.55 -2.39 -0.02 2.76 16 44 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 45 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.09 1.09 7.56 -2.39 -0.02 1.07 16 47 H 0.07 1.76 6.53 -2.39 -0.02 1.75 16 Total: -1.00 -95.87 393.45 6.72 -89.15 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.91 Total: 6.09 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 6.27 Total: -21.34 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -2.30 Total: -102.96 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -95.87 6.72 -89.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640829903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.082 kcal (2) G-P(sol) polarization free energy of solvation -95.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds