Wall clock time and date at job start Tue Mar 31 2020 15:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99817 * 2 1 4 4 N 1.46496 * 109.46625 * 125.00269 * 3 2 1 5 5 C 1.47050 * 125.41145 * 90.00738 * 4 3 2 6 6 C 1.54105 * 103.86439 * 179.97438 * 5 4 3 7 7 N 1.47053 * 103.99073 * 359.92305 * 6 5 4 8 8 C 1.46498 * 125.41152 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47119 * 89.99821 * 8 7 6 10 10 C 1.46895 * 111.00522 * 278.95613 * 9 8 7 11 11 C 1.50703 * 109.46836 * 295.77318 * 10 9 8 12 12 H 1.07996 * 120.00180 * 355.52039 * 11 10 9 13 13 C 1.37880 * 120.00023 * 175.51549 * 11 10 9 14 14 N 1.31519 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46754 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46902 * 119.99795 * 15 13 11 18 18 H 1.48493 * 109.47415 * 240.00283 * 15 13 11 19 19 C 1.46906 * 111.00062 * 154.99928 * 9 8 7 20 20 C 1.50697 * 109.47225 * 196.00531 * 19 9 8 21 21 C 1.38678 * 120.41751 * 263.79360 * 20 19 9 22 22 C 1.38626 * 118.42087 * 179.78890 * 21 20 19 23 23 C 1.38227 * 119.15961 * 0.50630 * 22 21 20 24 24 N 1.31852 * 120.76691 * 359.73015 * 23 22 21 25 25 C 1.31891 * 121.72062 * 359.97438 * 24 23 22 26 26 C 1.33949 * 125.40958 * 269.99438 * 4 3 2 27 27 O 1.21585 * 123.04559 * 0.02562 * 26 4 3 28 28 H 1.08001 * 119.99945 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00074 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00080 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47054 * 5.00372 * 3 2 1 32 32 H 1.09002 * 109.47038 * 245.00201 * 3 2 1 33 33 H 1.08997 * 110.55193 * 61.39802 * 5 4 3 34 34 H 1.09006 * 110.67047 * 298.64653 * 5 4 3 35 35 H 1.08996 * 110.55070 * 118.59410 * 6 5 4 36 36 H 1.09005 * 110.54415 * 241.25946 * 6 5 4 37 37 H 1.09000 * 109.47104 * 209.99717 * 8 7 6 38 38 H 1.09006 * 109.46829 * 330.00207 * 8 7 6 39 39 H 1.09002 * 109.47097 * 55.77022 * 10 9 8 40 40 H 1.09000 * 109.47928 * 175.77702 * 10 9 8 41 41 H 0.97000 * 119.99940 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47174 * 316.00389 * 19 9 8 43 43 H 1.09000 * 109.46836 * 76.00684 * 19 9 8 44 44 H 1.08003 * 120.78664 * 0.02562 * 21 20 19 45 45 H 1.08005 * 120.42159 * 180.22053 * 22 21 20 46 46 H 1.07998 * 119.61638 * 179.75420 * 23 22 21 47 47 H 1.08001 * 119.61625 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3850 0.8567 1.1019 6 6 4.8939 1.1151 2.5334 7 7 3.7376 1.7105 3.2197 8 6 3.7105 2.1405 4.6199 9 7 4.1262 3.5467 4.7083 10 6 5.5898 3.6663 4.6730 11 6 6.1777 3.0014 5.8910 12 1 5.5272 2.6004 6.6542 13 6 7.5460 2.9050 6.0310 14 7 8.3381 3.3938 5.1018 15 14 8.2747 2.0816 7.5411 16 1 7.1787 1.6195 8.4302 17 1 9.0958 0.9173 7.1222 18 1 9.1286 3.0527 8.2709 19 6 3.5748 4.1840 5.9117 20 6 3.6790 5.6815 5.7795 21 6 4.7473 6.3634 6.3424 22 6 4.8042 7.7403 6.1920 23 6 3.7958 8.3844 5.4999 24 7 2.7921 7.7041 4.9820 25 6 2.7085 6.3932 5.1005 26 6 2.7121 1.7932 2.3570 27 8 1.6262 2.2479 2.6610 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 4.9690 1.4272 0.3798 34 1 4.4234 -0.2073 0.8682 35 1 5.1825 0.1792 3.0117 36 1 5.7321 1.8119 2.5215 37 1 2.6992 2.0352 5.0128 38 1 4.3932 1.5225 5.2031 39 1 5.9723 3.1820 3.7745 40 1 5.8683 4.7201 4.6644 41 1 9.3007 3.3263 5.2005 42 1 2.5283 3.9012 6.0255 43 1 4.1370 3.8564 6.7862 44 1 5.5187 5.8339 6.8819 45 1 5.6236 8.3032 6.6141 46 1 3.8307 9.4573 5.3817 47 1 1.8710 5.8700 4.6632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839949288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:21 Heat of formation + Delta-G solvation = 64.620750 kcal Electronic energy + Delta-G solvation = -28791.038181 eV Core-core repulsion = 24975.561326 eV Total energy + Delta-G solvation = -3815.476854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59329 -39.66707 -37.02675 -35.87330 -35.22248 -32.82725 -32.74276 -31.69388 -30.89804 -28.94323 -27.20360 -26.69362 -25.44421 -24.18648 -22.99476 -22.38968 -22.03535 -20.34692 -19.92146 -19.16624 -17.03609 -16.55771 -16.40651 -16.31004 -16.02415 -15.69309 -14.94726 -14.79993 -14.67272 -14.51474 -14.09840 -13.81272 -13.65987 -13.40082 -13.22521 -13.05599 -12.78949 -12.50709 -12.45861 -12.25274 -11.96475 -11.77384 -11.56257 -11.29684 -11.17845 -11.02844 -10.85144 -10.67463 -10.48068 -10.19416 -9.80591 -9.77496 -9.45335 -9.23272 -8.99346 -8.74420 -8.58110 -8.50108 -8.05188 -7.32892 -6.17853 -4.28279 1.60142 1.82086 2.06538 2.93013 3.14660 3.24897 3.26630 3.61759 4.10334 4.26456 4.31445 4.75882 4.81103 4.89291 4.97117 5.11252 5.11923 5.17357 5.25991 5.30451 5.46172 5.51104 5.55445 5.63036 5.64591 5.69362 5.84041 5.84436 5.92770 6.06990 6.12210 6.19266 6.24646 6.41726 6.47088 6.51318 6.61585 6.66598 6.91649 6.99022 7.05291 7.21505 7.33524 7.40545 7.76244 7.85239 8.06473 8.09019 8.17003 8.43179 8.82748 9.04507 9.39313 10.86336 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.004458 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.618443 B = 6279.297987 C = 8654.249110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.176 4.176 3 C 0.180 3.820 4 N -0.637 5.637 5 C 0.096 3.904 6 C 0.093 3.907 7 N -0.611 5.611 8 C 0.320 3.680 9 N -0.553 5.553 10 C 0.188 3.812 11 C -0.554 4.554 12 H 0.058 0.942 13 C 0.071 3.929 14 N -0.884 5.884 15 Si 0.884 3.116 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.105 3.895 20 C -0.106 4.106 21 C -0.053 4.053 22 C -0.180 4.180 23 C 0.082 3.918 24 N -0.496 5.496 25 C 0.111 3.889 26 C 0.704 3.296 27 O -0.588 6.588 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.146 0.854 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -3.444 -5.867 9.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C 0.058 3.942 4 N -0.375 5.375 5 C -0.027 4.027 6 C -0.031 4.031 7 N -0.349 5.349 8 C 0.109 3.891 9 N -0.278 5.278 10 C 0.062 3.938 11 C -0.593 4.593 12 H 0.076 0.924 13 C -0.133 4.133 14 N -0.522 5.522 15 Si 0.712 3.288 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.024 4.024 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.200 4.200 23 C -0.075 4.075 24 N -0.204 5.204 25 C -0.046 4.046 26 C 0.406 3.594 27 O -0.466 6.466 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.158 0.842 45 H 0.145 0.855 46 H 0.163 0.837 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.365 -2.443 -6.571 10.915 hybrid contribution 2.014 -1.393 1.818 3.050 sum -6.352 -3.836 -4.753 8.812 Atomic orbital electron populations 1.23860 0.95889 1.01935 0.99307 1.23345 0.96369 0.98998 1.00860 1.20189 0.91227 0.95628 0.87153 1.47136 1.12786 1.66900 1.10720 1.22351 0.82594 0.99943 0.97843 1.22390 0.91064 0.99582 0.90017 1.47359 1.11694 1.64076 1.11762 1.21518 1.00139 0.89540 0.77878 1.62112 1.14526 1.14309 1.36862 1.19834 0.79979 0.97517 0.96430 1.21728 0.91889 1.39052 1.06611 0.92366 1.24914 0.97191 0.95136 0.96033 1.69952 1.03920 1.44985 1.33379 0.86669 0.79381 0.79427 0.83343 1.19772 1.20943 1.20943 1.20785 0.99040 0.89062 0.93527 1.20804 0.95246 0.97071 0.97728 1.21709 0.96514 0.93761 0.96004 1.22075 1.00378 0.95561 1.01941 1.22576 0.90411 0.99797 0.94739 1.67642 1.24542 1.09199 1.19048 1.22592 0.98107 0.89336 0.94602 1.15917 0.84426 0.78289 0.80721 1.90855 1.24024 1.52525 1.79239 0.88576 0.88266 0.87524 0.89602 0.89859 0.90520 0.90844 0.90516 0.89114 0.90640 0.90620 0.94764 0.95264 0.92765 0.91495 0.91929 0.84228 0.85489 0.83690 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 14.32 29.01 0.42 -1.37 16 2 C -0.18 -1.92 9.85 -36.02 -0.35 -2.27 16 3 C 0.18 2.15 6.43 -5.19 -0.03 2.12 16 4 N -0.64 -9.34 2.94 -180.09 -0.53 -9.87 16 5 C 0.10 1.16 7.68 -3.16 -0.02 1.14 16 6 C 0.09 1.40 7.37 -3.16 -0.02 1.38 16 7 N -0.61 -10.99 3.15 -182.23 -0.57 -11.57 16 8 C 0.32 6.04 5.65 -63.32 -0.36 5.68 16 9 N -0.55 -11.23 4.75 -241.43 -1.15 -12.38 16 10 C 0.19 4.36 4.88 -4.98 -0.02 4.34 16 11 C -0.55 -13.31 7.13 -34.44 -0.25 -13.56 16 12 H 0.06 1.38 6.14 -52.49 -0.32 1.06 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -23.64 13.29 55.43 0.74 -22.91 16 15 Si 0.88 19.54 29.54 -169.99 -5.02 14.52 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.10 1.93 4.95 -4.97 -0.02 1.91 16 20 C -0.11 -1.95 4.90 -104.48 -0.51 -2.46 16 21 C -0.05 -0.96 8.76 -39.28 -0.34 -1.30 16 22 C -0.18 -2.85 10.11 -39.44 -0.40 -3.25 16 23 C 0.08 1.30 11.18 -17.55 -0.20 1.10 16 24 N -0.50 -8.92 10.36 -13.25 -0.14 -9.05 16 25 C 0.11 2.01 10.88 -17.55 -0.19 1.82 16 26 C 0.70 13.15 8.30 -88.11 -0.73 12.41 16 27 O -0.59 -12.92 17.04 5.29 0.09 -12.83 16 28 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.10 1.04 7.84 -52.48 -0.41 0.63 16 30 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.09 1.14 7.57 -51.93 -0.39 0.74 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.55 6.33 -51.93 -0.33 1.22 16 37 H 0.08 1.39 7.33 -51.93 -0.38 1.01 16 38 H 0.08 1.47 6.52 -51.93 -0.34 1.13 16 39 H 0.03 0.86 5.92 -51.93 -0.31 0.55 16 40 H 0.03 0.76 6.70 -51.93 -0.35 0.41 16 41 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.07 1.13 7.62 -51.93 -0.40 0.73 16 43 H 0.06 1.20 5.98 -51.93 -0.31 0.89 16 44 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 45 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -30.98 387.40 -10.79 -41.77 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.90 Total: 7.11 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -3.14 Total: 9.36 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.65 Total: -65.77 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.98 -10.79 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839949288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.387 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds