Wall clock time and date at job start Tue Mar 31 2020 15:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99817 * 2 1 4 4 N 1.46496 * 109.46625 * 125.00269 * 3 2 1 5 5 C 1.47050 * 125.41145 * 90.00738 * 4 3 2 6 6 C 1.54105 * 103.86439 * 179.97438 * 5 4 3 7 7 N 1.47053 * 103.99073 * 359.92305 * 6 5 4 8 8 C 1.46498 * 125.41152 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47119 * 89.99821 * 8 7 6 10 10 C 1.46895 * 111.00522 * 278.95613 * 9 8 7 11 11 C 1.50703 * 109.46836 * 295.77318 * 10 9 8 12 12 H 1.07996 * 120.00180 * 355.52039 * 11 10 9 13 13 C 1.37880 * 120.00023 * 175.51549 * 11 10 9 14 14 N 1.31519 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46754 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46902 * 119.99795 * 15 13 11 18 18 H 1.48493 * 109.47415 * 240.00283 * 15 13 11 19 19 C 1.46906 * 111.00062 * 154.99928 * 9 8 7 20 20 C 1.50697 * 109.47225 * 196.00531 * 19 9 8 21 21 C 1.38678 * 120.41751 * 263.79360 * 20 19 9 22 22 C 1.38626 * 118.42087 * 179.78890 * 21 20 19 23 23 C 1.38227 * 119.15961 * 0.50630 * 22 21 20 24 24 N 1.31852 * 120.76691 * 359.73015 * 23 22 21 25 25 C 1.31891 * 121.72062 * 359.97438 * 24 23 22 26 26 C 1.33949 * 125.40958 * 269.99438 * 4 3 2 27 27 O 1.21585 * 123.04559 * 0.02562 * 26 4 3 28 28 H 1.08001 * 119.99945 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00074 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00080 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47054 * 5.00372 * 3 2 1 32 32 H 1.09002 * 109.47038 * 245.00201 * 3 2 1 33 33 H 1.08997 * 110.55193 * 61.39802 * 5 4 3 34 34 H 1.09006 * 110.67047 * 298.64653 * 5 4 3 35 35 H 1.08996 * 110.55070 * 118.59410 * 6 5 4 36 36 H 1.09005 * 110.54415 * 241.25946 * 6 5 4 37 37 H 1.09000 * 109.47104 * 209.99717 * 8 7 6 38 38 H 1.09006 * 109.46829 * 330.00207 * 8 7 6 39 39 H 1.09002 * 109.47097 * 55.77022 * 10 9 8 40 40 H 1.09000 * 109.47928 * 175.77702 * 10 9 8 41 41 H 0.97000 * 119.99940 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47174 * 316.00389 * 19 9 8 43 43 H 1.09000 * 109.46836 * 76.00684 * 19 9 8 44 44 H 1.08003 * 120.78664 * 0.02562 * 21 20 19 45 45 H 1.08005 * 120.42159 * 180.22053 * 22 21 20 46 46 H 1.07998 * 119.61638 * 179.75420 * 23 22 21 47 47 H 1.08001 * 119.61625 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3850 0.8567 1.1019 6 6 4.8939 1.1151 2.5334 7 7 3.7376 1.7105 3.2197 8 6 3.7105 2.1405 4.6199 9 7 4.1262 3.5467 4.7083 10 6 5.5898 3.6663 4.6730 11 6 6.1777 3.0014 5.8910 12 1 5.5272 2.6004 6.6542 13 6 7.5460 2.9050 6.0310 14 7 8.3381 3.3938 5.1018 15 14 8.2747 2.0816 7.5411 16 1 7.1787 1.6195 8.4302 17 1 9.0958 0.9173 7.1222 18 1 9.1286 3.0527 8.2709 19 6 3.5748 4.1840 5.9117 20 6 3.6790 5.6815 5.7795 21 6 4.7473 6.3634 6.3424 22 6 4.8042 7.7403 6.1920 23 6 3.7958 8.3844 5.4999 24 7 2.7921 7.7041 4.9820 25 6 2.7085 6.3932 5.1005 26 6 2.7121 1.7932 2.3570 27 8 1.6262 2.2479 2.6610 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 4.9690 1.4272 0.3798 34 1 4.4234 -0.2073 0.8682 35 1 5.1825 0.1792 3.0117 36 1 5.7321 1.8119 2.5215 37 1 2.6992 2.0352 5.0128 38 1 4.3932 1.5225 5.2031 39 1 5.9723 3.1820 3.7745 40 1 5.8683 4.7201 4.6644 41 1 9.3007 3.3263 5.2005 42 1 2.5283 3.9012 6.0255 43 1 4.1370 3.8564 6.7862 44 1 5.5187 5.8339 6.8819 45 1 5.6236 8.3032 6.6141 46 1 3.8307 9.4573 5.3817 47 1 1.8710 5.8700 4.6632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839949288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:20 Heat of formation + Delta-G solvation = 45.987228 kcal Electronic energy + Delta-G solvation = -28791.846191 eV Core-core repulsion = 24975.561326 eV Total energy + Delta-G solvation = -3816.284865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90967 -41.04197 -38.58621 -37.27515 -36.34695 -34.63540 -34.00358 -33.04173 -32.28907 -30.21712 -28.94360 -27.92731 -26.73154 -25.87342 -24.37563 -23.69516 -23.41391 -21.81422 -21.00284 -20.45044 -18.72546 -17.86076 -17.82934 -17.64753 -17.40532 -17.06042 -16.57359 -16.23983 -15.92354 -15.87771 -15.38783 -15.14741 -14.97178 -14.68565 -14.55320 -14.34035 -14.33509 -14.11597 -13.86056 -13.49155 -13.17104 -13.13377 -12.90237 -12.79795 -12.61960 -12.43291 -12.29370 -12.16295 -12.12357 -11.94444 -11.64976 -11.21746 -10.65809 -10.54680 -10.38696 -10.36063 -10.10165 -9.84313 -9.34274 -9.00416 -8.10725 -6.28272 0.25595 0.42691 1.14771 1.38573 1.43960 1.51843 1.75668 2.22201 2.40452 2.84683 2.99551 3.15955 3.55205 3.63207 3.65506 3.85143 3.95940 4.02504 4.09099 4.18659 4.20598 4.24120 4.24936 4.40008 4.50941 4.56923 4.62489 4.68665 4.75959 4.77971 4.86249 4.94624 4.98582 5.03849 5.20854 5.23691 5.30721 5.43517 5.50992 5.67971 5.71132 5.79930 5.85626 5.87331 5.95438 6.06239 6.25954 6.46696 6.72449 6.91630 7.07766 7.42828 7.63735 8.91867 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.004458 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.618443 B = 6279.297987 C = 8654.249110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.175 3.825 4 N -0.633 5.633 5 C 0.104 3.896 6 C 0.090 3.910 7 N -0.619 5.619 8 C 0.325 3.675 9 N -0.558 5.558 10 C 0.211 3.789 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.027 3.973 14 N -0.919 5.919 15 Si 0.945 3.055 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.285 1.285 19 C 0.109 3.891 20 C -0.119 4.119 21 C -0.069 4.069 22 C -0.174 4.174 23 C 0.084 3.916 24 N -0.511 5.511 25 C 0.101 3.899 26 C 0.694 3.306 27 O -0.630 6.630 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.013 0.987 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.126 0.874 45 H 0.157 0.843 46 H 0.184 0.816 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -4.086 -6.216 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.054 3.946 4 N -0.370 5.370 5 C -0.019 4.019 6 C -0.033 4.033 7 N -0.356 5.356 8 C 0.113 3.887 9 N -0.283 5.283 10 C 0.085 3.915 11 C -0.586 4.586 12 H 0.079 0.921 13 C -0.173 4.173 14 N -0.558 5.558 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.211 1.211 19 C -0.019 4.019 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.194 4.194 23 C -0.073 4.073 24 N -0.220 5.220 25 C -0.055 4.055 26 C 0.396 3.604 27 O -0.512 6.512 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.031 0.969 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.144 0.856 45 H 0.175 0.825 46 H 0.201 0.799 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.214 -3.117 -6.953 11.204 hybrid contribution 1.941 -1.128 1.893 2.937 sum -6.273 -4.245 -5.060 9.109 Atomic orbital electron populations 1.24029 0.96043 1.02491 0.98621 1.23373 0.96501 0.98883 1.01409 1.20420 0.91142 0.95743 0.87305 1.47294 1.14091 1.65819 1.09774 1.22530 0.80989 1.02383 0.95986 1.22506 0.89500 0.99239 0.92072 1.47405 1.12634 1.64072 1.11534 1.21406 0.99912 0.88492 0.78868 1.62084 1.12710 1.15478 1.38060 1.19395 0.81722 0.95053 0.95313 1.21873 0.91955 1.38185 1.06606 0.92109 1.25572 0.97652 0.95737 0.98345 1.70065 1.04093 1.46484 1.35159 0.85714 0.78565 0.78312 0.80302 1.19091 1.20783 1.21145 1.20769 0.99488 0.89379 0.92289 1.20791 0.95838 0.96878 0.98612 1.21734 0.96218 0.95029 0.96558 1.22395 1.01108 0.94701 1.01153 1.23199 0.89316 1.01446 0.93315 1.67678 1.25642 1.09019 1.19669 1.22590 0.98203 0.89763 0.94954 1.16204 0.83898 0.78370 0.81921 1.90810 1.25631 1.54481 1.80271 0.86840 0.89020 0.85987 0.91576 0.86650 0.88785 0.87168 0.89005 0.91679 0.90380 0.91208 0.96872 0.98352 0.92814 0.90073 0.92822 0.85619 0.82549 0.79920 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 14.32 67.78 0.97 -2.40 16 2 C -0.18 -3.61 9.85 25.65 0.25 -3.36 16 3 C 0.17 3.90 6.43 85.64 0.55 4.45 16 4 N -0.63 -17.70 2.94 -842.42 -2.48 -20.18 16 5 C 0.10 2.26 7.68 86.65 0.67 2.93 16 6 C 0.09 2.66 7.37 86.65 0.64 3.30 16 7 N -0.62 -22.45 3.15 -849.00 -2.68 -25.13 16 8 C 0.32 12.50 5.65 170.81 0.96 13.46 16 9 N -0.56 -23.35 4.75 -917.75 -4.36 -27.71 16 10 C 0.21 10.15 4.88 85.56 0.42 10.57 16 11 C -0.55 -26.71 7.13 25.60 0.18 -26.52 16 12 H 0.06 2.90 6.14 -2.91 -0.02 2.89 16 13 C 0.03 1.38 5.46 84.65 0.46 1.84 16 14 N -0.92 -49.84 13.29 21.45 0.28 -49.55 16 15 Si 0.94 40.10 29.54 68.60 2.03 42.12 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.11 4.14 4.95 85.55 0.42 4.56 16 20 C -0.12 -4.44 4.90 -19.78 -0.10 -4.54 16 21 C -0.07 -2.50 8.76 22.47 0.20 -2.30 16 22 C -0.17 -5.29 10.11 22.36 0.23 -5.07 16 23 C 0.08 2.51 11.18 84.69 0.95 3.46 16 24 N -0.51 -18.02 10.36 -195.85 -2.03 -20.05 16 25 C 0.10 3.72 10.88 84.67 0.92 4.64 16 26 C 0.69 25.94 8.30 179.47 1.49 27.43 16 27 O -0.63 -28.23 17.04 -3.99 -0.07 -28.30 16 28 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.09 1.89 7.84 -2.91 -0.02 1.87 16 30 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.07 1.74 7.57 -2.39 -0.02 1.72 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 2.27 6.33 -2.38 -0.02 2.25 16 37 H 0.08 2.94 7.33 -2.39 -0.02 2.92 16 38 H 0.07 2.75 6.52 -2.38 -0.02 2.74 16 39 H 0.01 0.69 5.92 -2.39 -0.01 0.68 16 40 H 0.00 -0.09 6.70 -2.39 -0.02 -0.10 16 41 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 42 H 0.08 2.79 7.62 -2.39 -0.02 2.78 16 43 H 0.05 2.11 5.98 -2.39 -0.01 2.10 16 44 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 46 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.15 5.34 8.06 -2.91 -0.02 5.32 16 Total: -1.00 -68.18 387.40 0.87 -67.30 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.96 Total: 29.02 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 9.21 Total: 32.46 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -11.26 Total: -142.61 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.07 Total: -28.30 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Total: -68.18 0.87 -67.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839949288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.291 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds