Wall clock time and date at job start Tue Mar 31 2020 15:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00070 * 2 1 4 4 N 1.46903 * 109.46990 * 124.21947 * 3 2 1 5 5 C 1.46906 * 110.99721 * 302.09639 * 4 3 2 6 6 C 1.50695 * 109.47131 * 288.77423 * 5 4 3 7 7 H 1.08003 * 120.00053 * 358.61972 * 6 5 4 8 8 C 1.37871 * 120.00072 * 178.62127 * 6 5 4 9 9 N 1.31515 * 120.00195 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47224 * 90.00084 * 10 8 6 12 12 H 1.48502 * 109.46709 * 209.99915 * 10 8 6 13 13 H 1.48496 * 109.47030 * 329.99540 * 10 8 6 14 14 C 1.46897 * 110.99831 * 66.04946 * 4 3 2 15 15 N 1.46500 * 109.46933 * 81.05051 * 14 4 3 16 16 C 1.47050 * 125.41597 * 89.99654 * 15 14 4 17 17 C 1.54101 * 103.86578 * 179.97438 * 16 15 14 18 18 N 1.47052 * 103.85916 * 359.97438 * 17 16 15 19 19 C 1.46511 * 125.40481 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46939 * 90.00458 * 19 18 17 21 21 C 1.38674 * 120.41824 * 269.71975 * 20 19 18 22 22 C 1.38617 * 118.42081 * 179.78196 * 21 20 19 23 23 C 1.38231 * 119.16235 * 0.51572 * 22 21 20 24 24 N 1.31855 * 120.75909 * 359.71933 * 23 22 21 25 25 C 1.31876 * 121.73101 * 0.02562 * 24 23 22 26 26 C 1.33945 * 109.18382 * 0.26821 * 18 17 16 27 27 O 1.21586 * 123.04404 * 179.73736 * 26 18 17 28 28 H 1.07997 * 119.99930 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99759 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99930 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47097 * 4.22041 * 3 2 1 32 32 H 1.09005 * 109.47257 * 244.21936 * 3 2 1 33 33 H 1.08995 * 109.46818 * 48.77849 * 5 4 3 34 34 H 1.09003 * 109.46515 * 168.77722 * 5 4 3 35 35 H 0.96993 * 120.00484 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47297 * 321.04925 * 14 4 3 37 37 H 1.08999 * 109.46746 * 201.04202 * 14 4 3 38 38 H 1.08998 * 110.54539 * 61.40115 * 16 15 14 39 39 H 1.08997 * 110.67147 * 298.65475 * 16 15 14 40 40 H 1.08998 * 110.55237 * 241.40369 * 17 16 15 41 41 H 1.09003 * 110.54813 * 118.59513 * 17 16 15 42 42 H 1.09005 * 109.46602 * 210.00103 * 19 18 17 43 43 H 1.08994 * 109.47176 * 330.00266 * 19 18 17 44 44 H 1.08004 * 120.78471 * 0.02562 * 21 20 19 45 45 H 1.08004 * 120.42255 * 180.21846 * 22 21 20 46 46 H 1.08001 * 119.61641 * 179.74685 * 23 22 21 47 47 H 1.07999 * 119.62015 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9829 1.3397 1.1453 5 6 2.2551 1.1691 2.4099 6 6 1.4532 2.4117 2.6994 7 1 1.4987 3.2534 2.0242 8 6 0.6613 2.4741 3.8263 9 7 0.6062 1.4494 4.6489 10 14 -0.3334 4.0141 4.1849 11 1 -1.6723 3.8968 3.5534 12 1 -0.4906 4.1710 5.6532 13 1 0.3721 5.1986 3.6333 14 6 4.0378 0.3271 1.0043 15 7 5.0857 0.8343 0.1149 16 6 6.2693 1.5962 0.5402 17 6 7.0237 1.8712 -0.7751 18 7 6.1853 1.2345 -1.8018 19 6 6.4712 1.2146 -3.2386 20 6 7.2927 -0.0045 -3.5704 21 6 8.6779 0.0528 -3.5398 22 6 9.3926 -1.0943 -3.8478 23 6 8.7058 -2.2461 -4.1834 24 7 7.3875 -2.2625 -4.2069 25 6 6.6753 -1.1917 -3.9148 26 6 5.1155 0.6813 -1.2156 27 8 4.2516 0.0907 -1.8346 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3577 2.1321 0.0756 32 1 2.6324 1.3963 -0.9254 33 1 1.5841 0.3139 2.3304 34 1 2.9663 0.9991 3.2183 35 1 0.0489 1.4932 5.4415 36 1 3.6130 -0.5839 0.5828 37 1 4.4658 0.1097 1.9828 38 1 6.8840 1.0021 1.2164 39 1 5.9744 2.5317 1.0154 40 1 8.0128 1.4139 -0.7517 41 1 7.1011 2.9436 -0.9547 42 1 5.5343 1.1839 -3.7950 43 1 7.0264 2.1121 -3.5111 44 1 9.1877 0.9683 -3.2783 45 1 10.4725 -1.0871 -3.8306 46 1 9.2553 -3.1429 -4.4287 47 1 5.5969 -1.2433 -3.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840073446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:44 Heat of formation + Delta-G solvation = 68.713345 kcal Electronic energy + Delta-G solvation = -28459.195945 eV Core-core repulsion = 24643.896558 eV Total energy + Delta-G solvation = -3815.299386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.03817 -40.15865 -37.30813 -36.08510 -34.97051 -32.76779 -32.75979 -32.07552 -31.25115 -29.11537 -27.30850 -26.81131 -25.70900 -23.95218 -23.64656 -22.87364 -22.00801 -20.93358 -19.76491 -18.64859 -17.42324 -16.84443 -16.71325 -16.58368 -16.17186 -15.83952 -15.41418 -15.06399 -14.62483 -14.41661 -14.22179 -13.92960 -13.87990 -13.65914 -13.55846 -13.33057 -13.21644 -12.62603 -12.43043 -12.27047 -12.12525 -12.02937 -11.75753 -11.38351 -11.10582 -10.93739 -10.72603 -10.57704 -10.43332 -10.12896 -9.97373 -9.84570 -9.69767 -9.33501 -9.28305 -8.89933 -8.56829 -8.42053 -8.30621 -7.28533 -6.00869 -4.01518 0.80195 1.02577 2.57974 3.06761 3.32281 3.35164 3.38592 3.42520 3.60852 3.91550 4.22490 4.44160 4.45003 4.48412 4.55822 4.65834 4.73711 4.89954 4.96536 5.13092 5.23057 5.29181 5.35102 5.38555 5.48253 5.58428 5.60942 5.70903 5.79941 5.82299 5.88125 5.93722 6.02161 6.16594 6.33406 6.46990 6.58255 6.73039 6.80222 6.98214 7.18465 7.32579 7.41930 7.53278 7.76688 7.77981 7.82448 8.06417 8.20831 8.52447 8.80503 9.05359 9.62111 11.09612 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.002721 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.773418 B =10286.289973 C =10839.009571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.094 3.906 4 N -0.546 5.546 5 C 0.195 3.805 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.307 3.693 15 N -0.614 5.614 16 C 0.096 3.904 17 C 0.096 3.904 18 N -0.636 5.636 19 C 0.198 3.802 20 C -0.161 4.161 21 C -0.062 4.062 22 C -0.179 4.179 23 C 0.098 3.902 24 N -0.487 5.487 25 C 0.126 3.874 26 C 0.700 3.300 27 O -0.581 6.581 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.007 0.993 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.015 -1.396 -14.883 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.185 4.185 3 C -0.034 4.034 4 N -0.270 5.270 5 C 0.071 3.929 6 C -0.539 4.539 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.095 3.905 15 N -0.352 5.352 16 C -0.028 4.028 17 C -0.027 4.027 18 N -0.374 5.374 19 C 0.075 3.925 20 C -0.164 4.164 21 C -0.089 4.089 22 C -0.199 4.199 23 C -0.059 4.059 24 N -0.195 5.195 25 C -0.031 4.031 26 C 0.402 3.598 27 O -0.459 6.459 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 18.186 -2.115 -15.238 23.820 hybrid contribution -0.315 0.821 0.757 1.160 sum 17.871 -1.294 -14.481 23.038 Atomic orbital electron populations 1.23625 0.95996 1.00902 1.01871 1.23415 0.96472 0.99671 0.98945 1.21224 0.94546 0.94119 0.93521 1.62105 1.13157 1.47051 1.04726 1.19743 0.92376 0.97261 0.83562 1.21074 1.24984 1.00400 1.07398 0.92107 1.24945 0.96959 0.96370 0.96196 1.69946 1.40207 1.30150 1.13517 0.86546 0.80441 0.83467 0.77248 1.20771 1.21335 1.19888 1.21683 0.85283 0.91634 0.91866 1.47481 1.24092 1.57871 1.05789 1.22284 0.86723 0.97949 0.95859 1.22347 0.94927 0.98648 0.86816 1.47178 1.24714 1.59431 1.06080 1.19902 0.99579 0.94150 0.78895 1.21388 0.94893 0.98330 1.01790 1.21487 0.93366 0.98606 0.95438 1.22118 1.01335 0.94248 1.02228 1.22830 0.90408 0.97724 0.94973 1.67767 1.08021 1.30036 1.13703 1.22896 1.00780 0.87279 0.92131 1.15898 0.81827 0.79604 0.82479 1.90903 1.40742 1.47913 1.66327 0.88700 0.89795 0.88732 0.90490 0.91109 0.97543 0.95710 0.92996 0.92261 0.89629 0.90596 0.89433 0.90885 0.90246 0.88585 0.89356 0.84977 0.84877 0.82938 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 14.32 29.01 0.42 -3.21 16 2 C -0.17 -3.36 7.35 -36.03 -0.26 -3.63 16 3 C 0.09 1.97 5.57 -4.97 -0.03 1.94 16 4 N -0.55 -11.66 4.76 -241.43 -1.15 -12.81 16 5 C 0.20 4.93 4.55 -4.98 -0.02 4.91 16 6 C -0.50 -13.78 8.59 -34.44 -0.30 -14.08 16 7 H 0.06 1.69 7.50 -52.48 -0.39 1.30 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.31 5.60 5.69 -63.32 -0.36 5.24 16 15 N -0.61 -9.67 3.17 -182.34 -0.58 -10.25 16 16 C 0.10 1.09 7.68 -3.17 -0.02 1.07 16 17 C 0.10 0.85 7.68 -3.17 -0.02 0.83 16 18 N -0.64 -7.51 2.94 -180.19 -0.53 -8.04 16 19 C 0.20 1.87 6.15 -5.19 -0.03 1.83 16 20 C -0.16 -1.58 5.48 -104.48 -0.57 -2.15 16 21 C -0.06 -0.48 9.86 -39.28 -0.39 -0.87 16 22 C -0.18 -1.35 10.11 -39.44 -0.40 -1.75 16 23 C 0.10 0.91 11.18 -17.54 -0.20 0.72 16 24 N -0.49 -6.03 10.36 -13.25 -0.14 -6.17 16 25 C 0.13 1.53 10.86 -17.55 -0.19 1.34 16 26 C 0.70 11.28 7.63 -88.40 -0.67 10.60 16 27 O -0.58 -11.19 15.47 5.29 0.08 -11.11 16 28 H 0.09 1.86 7.84 -52.49 -0.41 1.45 16 29 H 0.08 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.09 1.90 6.76 -52.49 -0.35 1.55 16 31 H 0.08 1.73 6.96 -51.93 -0.36 1.37 16 32 H 0.07 1.49 5.73 -51.93 -0.30 1.19 16 33 H 0.01 0.18 6.65 -51.93 -0.35 -0.16 16 34 H 0.02 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 1.14 5.90 -51.93 -0.31 0.84 16 37 H 0.09 1.48 7.56 -51.93 -0.39 1.09 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 1.00 7.86 -51.93 -0.41 0.60 16 43 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -33.83 388.68 -10.92 -44.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.03 Total: 2.55 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.15 Total: 4.27 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -1.66 Total: -62.86 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.83 -10.92 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840073446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.466 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds