Wall clock time and date at job start Tue Mar 31 2020 15:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00070 * 2 1 4 4 N 1.46903 * 109.46990 * 124.21947 * 3 2 1 5 5 C 1.46906 * 110.99721 * 302.09639 * 4 3 2 6 6 C 1.50695 * 109.47131 * 288.77423 * 5 4 3 7 7 H 1.08003 * 120.00053 * 358.61972 * 6 5 4 8 8 C 1.37871 * 120.00072 * 178.62127 * 6 5 4 9 9 N 1.31515 * 120.00195 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47224 * 90.00084 * 10 8 6 12 12 H 1.48502 * 109.46709 * 209.99915 * 10 8 6 13 13 H 1.48496 * 109.47030 * 329.99540 * 10 8 6 14 14 C 1.46897 * 110.99831 * 66.04946 * 4 3 2 15 15 N 1.46500 * 109.46933 * 81.05051 * 14 4 3 16 16 C 1.47050 * 125.41597 * 89.99654 * 15 14 4 17 17 C 1.54101 * 103.86578 * 179.97438 * 16 15 14 18 18 N 1.47052 * 103.85916 * 359.97438 * 17 16 15 19 19 C 1.46511 * 125.40481 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46939 * 90.00458 * 19 18 17 21 21 C 1.38674 * 120.41824 * 269.71975 * 20 19 18 22 22 C 1.38617 * 118.42081 * 179.78196 * 21 20 19 23 23 C 1.38231 * 119.16235 * 0.51572 * 22 21 20 24 24 N 1.31855 * 120.75909 * 359.71933 * 23 22 21 25 25 C 1.31876 * 121.73101 * 0.02562 * 24 23 22 26 26 C 1.33945 * 109.18382 * 0.26821 * 18 17 16 27 27 O 1.21586 * 123.04404 * 179.73736 * 26 18 17 28 28 H 1.07997 * 119.99930 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99759 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99930 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47097 * 4.22041 * 3 2 1 32 32 H 1.09005 * 109.47257 * 244.21936 * 3 2 1 33 33 H 1.08995 * 109.46818 * 48.77849 * 5 4 3 34 34 H 1.09003 * 109.46515 * 168.77722 * 5 4 3 35 35 H 0.96993 * 120.00484 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47297 * 321.04925 * 14 4 3 37 37 H 1.08999 * 109.46746 * 201.04202 * 14 4 3 38 38 H 1.08998 * 110.54539 * 61.40115 * 16 15 14 39 39 H 1.08997 * 110.67147 * 298.65475 * 16 15 14 40 40 H 1.08998 * 110.55237 * 241.40369 * 17 16 15 41 41 H 1.09003 * 110.54813 * 118.59513 * 17 16 15 42 42 H 1.09005 * 109.46602 * 210.00103 * 19 18 17 43 43 H 1.08994 * 109.47176 * 330.00266 * 19 18 17 44 44 H 1.08004 * 120.78471 * 0.02562 * 21 20 19 45 45 H 1.08004 * 120.42255 * 180.21846 * 22 21 20 46 46 H 1.08001 * 119.61641 * 179.74685 * 23 22 21 47 47 H 1.07999 * 119.62015 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9829 1.3397 1.1453 5 6 2.2551 1.1691 2.4099 6 6 1.4532 2.4117 2.6994 7 1 1.4987 3.2534 2.0242 8 6 0.6613 2.4741 3.8263 9 7 0.6062 1.4494 4.6489 10 14 -0.3334 4.0141 4.1849 11 1 -1.6723 3.8968 3.5534 12 1 -0.4906 4.1710 5.6532 13 1 0.3721 5.1986 3.6333 14 6 4.0378 0.3271 1.0043 15 7 5.0857 0.8343 0.1149 16 6 6.2693 1.5962 0.5402 17 6 7.0237 1.8712 -0.7751 18 7 6.1853 1.2345 -1.8018 19 6 6.4712 1.2146 -3.2386 20 6 7.2927 -0.0045 -3.5704 21 6 8.6779 0.0528 -3.5398 22 6 9.3926 -1.0943 -3.8478 23 6 8.7058 -2.2461 -4.1834 24 7 7.3875 -2.2625 -4.2069 25 6 6.6753 -1.1917 -3.9148 26 6 5.1155 0.6813 -1.2156 27 8 4.2516 0.0907 -1.8346 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3577 2.1321 0.0756 32 1 2.6324 1.3963 -0.9254 33 1 1.5841 0.3139 2.3304 34 1 2.9663 0.9991 3.2183 35 1 0.0489 1.4932 5.4415 36 1 3.6130 -0.5839 0.5828 37 1 4.4658 0.1097 1.9828 38 1 6.8840 1.0021 1.2164 39 1 5.9744 2.5317 1.0154 40 1 8.0128 1.4139 -0.7517 41 1 7.1011 2.9436 -0.9547 42 1 5.5343 1.1839 -3.7950 43 1 7.0264 2.1121 -3.5111 44 1 9.1877 0.9683 -3.2783 45 1 10.4725 -1.0871 -3.8306 46 1 9.2553 -3.1429 -4.4287 47 1 5.5969 -1.2433 -3.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840073446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:43 Heat of formation + Delta-G solvation = 46.781823 kcal Electronic energy + Delta-G solvation = -28460.146967 eV Core-core repulsion = 24643.896558 eV Total energy + Delta-G solvation = -3816.250408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07900 -40.94704 -38.94524 -37.29760 -36.01193 -34.81029 -33.89805 -33.11533 -32.38695 -30.16961 -29.05129 -28.02401 -27.03574 -25.48892 -24.53571 -23.70935 -23.10596 -22.57970 -21.04993 -20.14631 -18.42897 -18.16060 -17.79806 -17.65498 -17.39872 -17.09434 -16.74655 -16.38436 -16.10718 -15.80199 -15.49000 -15.20815 -15.08292 -14.70575 -14.56343 -14.32679 -14.21123 -14.01229 -13.93728 -13.38955 -13.29672 -13.02870 -12.95487 -12.77446 -12.66048 -12.59479 -12.46743 -12.28890 -12.21744 -11.98598 -11.37684 -11.17355 -10.76651 -10.58315 -10.45554 -10.21105 -10.07807 -10.00049 -9.41557 -9.02502 -8.15322 -6.23930 0.08805 0.36418 1.40784 1.42170 1.43358 1.52989 1.55571 2.16145 2.42887 2.76223 3.02424 3.17289 3.44720 3.53198 3.65531 3.74171 3.84636 3.98415 4.04220 4.08650 4.11882 4.22456 4.28727 4.36241 4.43834 4.60749 4.63120 4.66247 4.70450 4.77808 4.86215 4.93693 5.01342 5.03960 5.11019 5.19593 5.20098 5.28591 5.36653 5.64566 5.69315 5.78220 5.79372 5.82658 5.89046 6.07653 6.30450 6.57942 6.70472 6.89895 7.04135 7.44319 7.60062 8.94606 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.002721 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.773418 B =10286.289973 C =10839.009571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.106 3.894 4 N -0.546 5.546 5 C 0.214 3.786 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.314 3.686 15 N -0.623 5.623 16 C 0.088 3.912 17 C 0.102 3.898 18 N -0.629 5.629 19 C 0.197 3.803 20 C -0.162 4.162 21 C -0.055 4.055 22 C -0.168 4.168 23 C 0.082 3.918 24 N -0.525 5.525 25 C 0.096 3.904 26 C 0.688 3.312 27 O -0.624 6.624 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.069 0.931 33 H -0.018 1.018 34 H 0.009 0.991 35 H 0.263 0.737 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.131 0.869 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.174 0.826 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.946 0.506 -15.190 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.198 4.198 3 C -0.022 4.022 4 N -0.271 5.271 5 C 0.087 3.913 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.102 3.898 15 N -0.361 5.361 16 C -0.035 4.035 17 C -0.020 4.020 18 N -0.366 5.366 19 C 0.075 3.925 20 C -0.166 4.166 21 C -0.081 4.081 22 C -0.187 4.187 23 C -0.075 4.075 24 N -0.234 5.234 25 C -0.060 4.060 26 C 0.390 3.610 27 O -0.505 6.505 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.087 0.913 33 H -0.001 1.001 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.149 0.851 44 H 0.189 0.811 45 H 0.188 0.812 46 H 0.191 0.809 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.183 -0.182 -15.573 26.292 hybrid contribution -1.128 0.166 0.794 1.389 sum 20.055 -0.016 -14.779 24.912 Atomic orbital electron populations 1.23806 0.95767 1.01819 1.00482 1.23386 0.96902 0.99321 1.00217 1.21027 0.94159 0.93822 0.93214 1.62065 1.13275 1.48398 1.03312 1.19359 0.91532 0.95534 0.84826 1.21313 1.25459 1.00863 1.07429 0.92693 1.25749 0.97951 0.99384 0.95957 1.70060 1.41022 1.32081 1.13996 0.85515 0.78855 0.79833 0.77212 1.20312 1.20727 1.19083 1.21466 0.85175 0.90503 0.92694 1.47373 1.24546 1.58441 1.05712 1.22594 0.85474 0.97448 0.97944 1.22610 0.95075 1.00356 0.83968 1.47278 1.23695 1.58262 1.07374 1.20102 0.99300 0.95826 0.77275 1.21364 0.96147 0.97199 1.01872 1.21914 0.92122 1.00171 0.93874 1.22532 1.03113 0.93148 0.99954 1.23328 0.89528 0.99687 0.94970 1.67663 1.09898 1.30744 1.15142 1.22658 0.99857 0.88872 0.94658 1.16228 0.82620 0.79681 0.82515 1.90866 1.42707 1.49765 1.67205 0.88918 0.87703 0.88838 0.92237 0.91253 1.00058 0.97313 0.92820 0.93848 0.88855 0.88695 0.89938 0.87637 0.87515 0.90724 0.85079 0.81062 0.81183 0.80881 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.19 14.32 67.77 0.97 -6.22 16 2 C -0.18 -7.56 7.35 25.64 0.19 -7.37 16 3 C 0.11 4.61 5.57 85.56 0.48 5.09 16 4 N -0.55 -24.03 4.76 -917.75 -4.37 -28.40 16 5 C 0.21 11.12 4.55 85.55 0.39 11.51 16 6 C -0.51 -28.67 8.59 25.60 0.22 -28.45 16 7 H 0.05 3.09 7.50 -2.91 -0.02 3.06 16 8 C 0.01 0.44 5.46 84.65 0.46 0.90 16 9 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 10 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 C 0.31 11.83 5.69 170.81 0.97 12.81 16 15 N -0.62 -19.59 3.17 -849.52 -2.69 -22.28 16 16 C 0.09 1.83 7.68 86.65 0.67 2.49 16 17 C 0.10 1.42 7.68 86.65 0.67 2.08 16 18 N -0.63 -13.74 2.94 -842.71 -2.48 -16.22 16 19 C 0.20 3.37 6.15 85.63 0.53 3.90 16 20 C -0.16 -2.96 5.48 -19.77 -0.11 -3.07 16 21 C -0.05 -0.63 9.86 22.46 0.22 -0.40 16 22 C -0.17 -1.91 10.11 22.36 0.23 -1.68 16 23 C 0.08 1.41 11.18 84.69 0.95 2.35 16 24 N -0.53 -13.38 10.36 -195.84 -2.03 -15.41 16 25 C 0.10 2.45 10.86 84.67 0.92 3.37 16 26 C 0.69 22.35 7.63 179.57 1.37 23.72 16 27 O -0.62 -25.36 15.47 -3.99 -0.06 -25.42 16 28 H 0.09 3.71 7.84 -2.91 -0.02 3.68 16 29 H 0.10 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.09 3.97 6.76 -2.91 -0.02 3.95 16 31 H 0.06 2.77 6.96 -2.39 -0.02 2.75 16 32 H 0.07 3.05 5.73 -2.38 -0.01 3.04 16 33 H -0.02 -1.04 6.65 -2.39 -0.02 -1.05 16 34 H 0.01 0.48 7.66 -2.39 -0.02 0.46 16 35 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.04 1.77 5.90 -2.39 -0.01 1.76 16 37 H 0.09 3.32 7.56 -2.39 -0.02 3.30 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.61 7.86 -2.38 -0.02 1.59 16 43 H 0.13 1.12 8.09 -2.39 -0.02 1.11 16 44 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 47 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -77.45 388.68 0.75 -76.70 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.96 Total: 18.66 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 9.11 Total: 21.02 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -11.28 Total: -137.19 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.45 0.75 -76.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840073446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.478 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds