Wall clock time and date at job start Tue Mar 31 2020 15:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46686 * 2 1 4 4 N 1.46500 * 109.46515 * 179.97438 * 3 2 1 5 5 C 1.35315 * 125.86636 * 125.32688 * 4 3 2 6 6 C 1.35346 * 106.17922 * 180.11714 * 5 4 3 7 7 C 1.50703 * 126.75477 * 179.85674 * 6 5 4 8 8 N 1.46500 * 109.47189 * 94.71155 * 7 6 5 9 9 C 1.39665 * 119.99720 * 180.02562 * 8 7 6 10 10 C 1.38972 * 120.04659 * 0.02562 * 9 8 7 11 11 C 1.38121 * 120.03267 * 179.97438 * 10 9 8 12 12 C 1.38217 * 120.12905 * 359.74558 * 11 10 9 13 13 C 1.38769 * 120.09042 * 0.50710 * 12 11 10 14 14 O 1.35904 * 120.01777 * 179.76755 * 13 12 11 15 15 C 1.42903 * 116.99628 * 359.72721 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.38613 * 119.96776 * 359.49589 * 13 12 11 26 26 N 1.33774 * 106.49404 * 359.58959 * 6 5 4 27 27 N 1.28636 * 108.88651 * 0.26672 * 26 6 5 28 28 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47432 * 300.00136 * 1 2 3 30 30 H 1.09005 * 109.47207 * 60.00004 * 1 2 3 31 31 H 1.09002 * 109.47230 * 240.00249 * 2 1 3 32 32 H 1.08993 * 109.46939 * 119.99771 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00159 * 3 2 1 34 34 H 1.08993 * 109.47245 * 299.99584 * 3 2 1 35 35 H 1.08008 * 126.91003 * 359.97200 * 5 4 3 36 36 H 1.08998 * 109.46906 * 334.70742 * 7 6 5 37 37 H 1.08999 * 109.46849 * 214.71479 * 7 6 5 38 38 H 0.96999 * 120.00164 * 359.97438 * 8 7 6 39 39 H 1.07993 * 119.98580 * 359.95849 * 10 9 8 40 40 H 1.08001 * 119.93308 * 180.02562 * 11 10 9 41 41 H 1.07996 * 119.95268 * 180.27991 * 12 11 10 42 42 H 1.09002 * 109.47382 * 59.99787 * 15 14 13 43 43 H 1.09001 * 109.46938 * 299.99774 * 15 14 13 44 44 H 1.09001 * 109.47194 * 299.99575 * 16 15 14 45 45 H 1.08992 * 109.47399 * 59.99748 * 16 15 14 46 46 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.06907 * 180.27740 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2981 2.0765 -0.8938 6 6 5.5723 1.8107 -0.5228 7 6 6.8285 2.2889 -1.2043 8 7 7.3013 3.5133 -0.5536 9 6 8.4577 4.1469 -1.0139 10 6 9.1602 3.6170 -2.0896 11 6 10.3035 4.2440 -2.5449 12 6 10.7489 5.4022 -1.9361 13 6 10.0545 5.9330 -0.8583 14 8 10.4964 7.0693 -0.2578 15 6 11.6858 7.6609 -0.7845 16 6 12.0253 8.9209 0.0142 17 6 13.2794 9.5452 -0.5416 18 1 13.7839 9.0886 -1.3802 19 6 13.7825 10.6992 0.0207 20 7 14.8771 11.2437 -0.4640 21 14 12.9094 11.4894 1.4708 22 1 13.4497 10.9326 2.7370 23 1 13.1303 12.9576 1.4416 24 1 11.4541 11.2060 1.3866 25 6 8.9066 5.3069 -0.3981 26 7 5.4973 1.0448 0.5715 27 7 4.2588 0.8448 0.8556 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9787 2.6726 -1.7360 36 1 6.6169 2.4936 -2.2538 37 1 7.5966 1.5190 -1.1320 38 1 6.8109 3.8843 0.1966 39 1 8.8122 2.7143 -2.5695 40 1 10.8480 3.8311 -3.3813 41 1 11.6407 5.8927 -2.2974 42 1 11.5282 7.9246 -1.8303 43 1 12.5091 6.9505 -0.7090 44 1 11.2022 9.6315 -0.0609 45 1 12.1831 8.6569 1.0598 46 1 15.2309 12.0558 -0.0687 47 1 8.3624 5.7211 0.4377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865424052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:27 Heat of formation + Delta-G solvation = 76.468907 kcal Electronic energy + Delta-G solvation = -25854.171777 eV Core-core repulsion = 22039.208697 eV Total energy + Delta-G solvation = -3814.963080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.76423 -39.76874 -37.89702 -36.73386 -35.29646 -33.29487 -33.11104 -32.08029 -31.04077 -29.76378 -28.64755 -27.73338 -26.31609 -24.98101 -23.33894 -22.73049 -22.28915 -21.57532 -20.89793 -20.24536 -18.15134 -17.91645 -17.01919 -16.74069 -16.29217 -15.82345 -15.60117 -15.48562 -15.33455 -15.32402 -14.56149 -14.34606 -14.16149 -14.02919 -13.67764 -13.35206 -13.24423 -12.87610 -12.82175 -12.66178 -12.43100 -12.29371 -12.04848 -11.74981 -11.65688 -11.61029 -11.30290 -11.24145 -10.83025 -10.66766 -10.55479 -10.12454 -10.05130 -9.85099 -9.77751 -9.71649 -9.30135 -8.59162 -7.96903 -7.34522 -6.10377 -4.10850 1.07104 1.71628 1.77628 1.86486 1.94084 3.31245 3.36866 3.38500 3.44105 3.67907 3.86408 3.98350 4.00811 4.12047 4.26182 4.33617 4.42167 4.49486 4.57035 4.62063 4.84127 4.97664 5.09083 5.13550 5.23140 5.23994 5.29565 5.35038 5.45484 5.50569 5.54517 5.58267 5.62361 5.77994 6.00544 6.02965 6.04431 6.10347 6.38449 6.49948 6.62096 6.75207 6.86576 7.11659 7.28320 7.36828 7.62513 7.68060 8.03693 8.04218 8.42609 8.90926 9.50252 11.02231 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.001603 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.591098 B =17460.754942 C =18317.098143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.113 3.887 4 N -0.292 5.292 5 C -0.029 4.029 6 C -0.039 4.039 7 C 0.218 3.782 8 N -0.744 5.744 9 C 0.248 3.752 10 C -0.243 4.243 11 C -0.036 4.036 12 C -0.262 4.262 13 C 0.187 3.813 14 O -0.321 6.321 15 C 0.074 3.926 16 C -0.009 4.009 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.236 4.236 26 N -0.252 5.252 27 N -0.081 5.081 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.193 0.807 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.023 0.977 46 H 0.265 0.735 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.002 -23.313 -3.875 38.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.008 4.008 4 N -0.085 5.085 5 C -0.181 4.181 6 C -0.177 4.177 7 C 0.092 3.908 8 N -0.376 5.376 9 C 0.146 3.854 10 C -0.265 4.265 11 C -0.054 4.054 12 C -0.283 4.283 13 C 0.139 3.861 14 O -0.234 6.234 15 C 0.000 4.000 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.259 4.259 26 N -0.119 5.119 27 N -0.061 5.061 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.210 0.790 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -29.980 -24.100 -2.536 38.550 hybrid contribution -0.558 1.315 -0.122 1.433 sum -30.538 -22.785 -2.658 38.195 Atomic orbital electron populations 1.21707 0.93649 1.03026 1.02449 1.21830 0.97175 0.94268 1.04326 1.22295 0.72419 1.00490 1.05560 1.47501 1.09328 1.32947 1.18685 1.23517 0.90823 1.03973 0.99825 1.21951 0.95077 1.03113 0.97566 1.19309 0.89894 0.87031 0.94550 1.44489 1.27500 1.27515 1.38048 1.17301 0.85808 0.90335 0.91955 1.20400 1.00175 1.04175 1.01762 1.20633 0.94212 0.93358 0.97236 1.21169 1.04636 1.01186 1.01289 1.18762 0.91645 0.85615 0.90101 1.86096 1.44406 1.36276 1.56578 1.23060 0.82795 0.95801 0.98384 1.19589 0.97652 0.91412 0.96040 1.20861 1.07987 1.09689 1.17833 0.90699 1.24926 0.94613 0.96512 0.96913 1.69895 1.21287 1.20788 1.41700 0.86765 0.81027 0.78449 0.83072 1.20075 1.21211 1.18764 1.19637 1.00384 0.99170 1.06757 1.75153 1.09449 1.14404 1.12890 1.78333 0.96225 1.17143 1.14395 0.91503 0.91983 0.92159 0.90998 0.89888 0.88061 0.87462 0.78998 0.90461 0.90370 0.76617 0.86519 0.86202 0.85446 0.92453 0.92467 0.95478 0.95880 0.92492 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.21 9.91 37.16 0.37 0.16 16 2 C -0.14 -0.39 6.06 -26.73 -0.16 -0.56 16 3 C 0.11 0.31 6.46 -4.04 -0.03 0.29 16 4 N -0.29 -1.96 3.44 -61.26 -0.21 -2.17 16 5 C -0.03 -0.18 11.50 -17.05 -0.20 -0.38 16 6 C -0.04 -0.34 6.62 -82.78 -0.55 -0.89 16 7 C 0.22 1.82 5.47 -5.19 -0.03 1.79 16 8 N -0.74 -7.73 5.72 -59.82 -0.34 -8.08 16 9 C 0.25 3.23 6.65 -83.81 -0.56 2.68 16 10 C -0.24 -2.99 9.31 -39.35 -0.37 -3.36 16 11 C -0.04 -0.47 10.03 -39.63 -0.40 -0.87 16 12 C -0.26 -4.20 9.04 -39.39 -0.36 -4.55 16 13 C 0.19 3.29 6.68 -39.25 -0.26 3.03 16 14 O -0.32 -6.52 10.13 -19.44 -0.20 -6.71 16 15 C 0.07 1.56 4.68 37.16 0.17 1.74 16 16 C -0.01 -0.23 4.41 -27.88 -0.12 -0.36 16 17 C -0.53 -15.01 9.66 -34.44 -0.33 -15.35 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 21 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 25 C -0.24 -3.65 9.83 -39.24 -0.39 -4.03 16 26 N -0.25 -2.94 12.41 33.29 0.41 -2.53 16 27 N -0.08 -0.84 12.91 60.35 0.78 -0.06 16 28 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.11 0.01 8.07 -51.93 -0.42 -0.40 16 35 H 0.19 0.50 8.06 -52.48 -0.42 0.07 16 36 H 0.08 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 38 H 0.40 4.06 8.47 -40.82 -0.35 3.72 16 39 H 0.12 1.14 6.73 -52.49 -0.35 0.79 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 42 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 43 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 44 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 45 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -34.59 393.42 -8.05 -42.63 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.23 Total: -0.79 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.30 Total: -18.65 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.41 Total: -39.59 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.20 Total: -6.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.59 -8.05 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865424052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.103 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds