Wall clock time and date at job start Tue Mar 31 2020 15:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46686 * 2 1 4 4 N 1.46500 * 109.46515 * 179.97438 * 3 2 1 5 5 C 1.35315 * 125.86636 * 125.32688 * 4 3 2 6 6 C 1.35346 * 106.17922 * 180.11714 * 5 4 3 7 7 C 1.50703 * 126.75477 * 179.85674 * 6 5 4 8 8 N 1.46500 * 109.47189 * 94.71155 * 7 6 5 9 9 C 1.39665 * 119.99720 * 180.02562 * 8 7 6 10 10 C 1.38972 * 120.04659 * 0.02562 * 9 8 7 11 11 C 1.38121 * 120.03267 * 179.97438 * 10 9 8 12 12 C 1.38217 * 120.12905 * 359.74558 * 11 10 9 13 13 C 1.38769 * 120.09042 * 0.50710 * 12 11 10 14 14 O 1.35904 * 120.01777 * 179.76755 * 13 12 11 15 15 C 1.42903 * 116.99628 * 359.72721 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.38613 * 119.96776 * 359.49589 * 13 12 11 26 26 N 1.33774 * 106.49404 * 359.58959 * 6 5 4 27 27 N 1.28636 * 108.88651 * 0.26672 * 26 6 5 28 28 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47432 * 300.00136 * 1 2 3 30 30 H 1.09005 * 109.47207 * 60.00004 * 1 2 3 31 31 H 1.09002 * 109.47230 * 240.00249 * 2 1 3 32 32 H 1.08993 * 109.46939 * 119.99771 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00159 * 3 2 1 34 34 H 1.08993 * 109.47245 * 299.99584 * 3 2 1 35 35 H 1.08008 * 126.91003 * 359.97200 * 5 4 3 36 36 H 1.08998 * 109.46906 * 334.70742 * 7 6 5 37 37 H 1.08999 * 109.46849 * 214.71479 * 7 6 5 38 38 H 0.96999 * 120.00164 * 359.97438 * 8 7 6 39 39 H 1.07993 * 119.98580 * 359.95849 * 10 9 8 40 40 H 1.08001 * 119.93308 * 180.02562 * 11 10 9 41 41 H 1.07996 * 119.95268 * 180.27991 * 12 11 10 42 42 H 1.09002 * 109.47382 * 59.99787 * 15 14 13 43 43 H 1.09001 * 109.46938 * 299.99774 * 15 14 13 44 44 H 1.09001 * 109.47194 * 299.99575 * 16 15 14 45 45 H 1.08992 * 109.47399 * 59.99748 * 16 15 14 46 46 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.06907 * 180.27740 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2981 2.0765 -0.8938 6 6 5.5723 1.8107 -0.5228 7 6 6.8285 2.2889 -1.2043 8 7 7.3013 3.5133 -0.5536 9 6 8.4577 4.1469 -1.0139 10 6 9.1602 3.6170 -2.0896 11 6 10.3035 4.2440 -2.5449 12 6 10.7489 5.4022 -1.9361 13 6 10.0545 5.9330 -0.8583 14 8 10.4964 7.0693 -0.2578 15 6 11.6858 7.6609 -0.7845 16 6 12.0253 8.9209 0.0142 17 6 13.2794 9.5452 -0.5416 18 1 13.7839 9.0886 -1.3802 19 6 13.7825 10.6992 0.0207 20 7 14.8771 11.2437 -0.4640 21 14 12.9094 11.4894 1.4708 22 1 13.4497 10.9326 2.7370 23 1 13.1303 12.9576 1.4416 24 1 11.4541 11.2060 1.3866 25 6 8.9066 5.3069 -0.3981 26 7 5.4973 1.0448 0.5715 27 7 4.2588 0.8448 0.8556 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9787 2.6726 -1.7360 36 1 6.6169 2.4936 -2.2538 37 1 7.5966 1.5190 -1.1320 38 1 6.8109 3.8843 0.1966 39 1 8.8122 2.7143 -2.5695 40 1 10.8480 3.8311 -3.3813 41 1 11.6407 5.8927 -2.2974 42 1 11.5282 7.9246 -1.8303 43 1 12.5091 6.9505 -0.7090 44 1 11.2022 9.6315 -0.0609 45 1 12.1831 8.6569 1.0598 46 1 15.2309 12.0558 -0.0687 47 1 8.3624 5.7211 0.4377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865424052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:26 Heat of formation + Delta-G solvation = 53.973083 kcal Electronic energy + Delta-G solvation = -25855.147269 eV Core-core repulsion = 22039.208697 eV Total energy + Delta-G solvation = -3815.938572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.32924 -41.00111 -39.09139 -37.18394 -36.19150 -35.34481 -33.55130 -32.89654 -32.79113 -30.99251 -29.65710 -28.07373 -27.38515 -26.57953 -23.80676 -23.68333 -23.23673 -22.61766 -21.79808 -21.49652 -19.49374 -18.67729 -18.41421 -17.51256 -17.25149 -16.93848 -16.80346 -16.54379 -16.28759 -16.01093 -15.96025 -15.50337 -15.07125 -14.71422 -14.49431 -14.41792 -14.30709 -14.17496 -13.98389 -13.47569 -13.28394 -13.17187 -12.94068 -12.73935 -12.56908 -12.48793 -12.35473 -12.23761 -11.98843 -11.94566 -11.75754 -11.71792 -11.57326 -11.39581 -11.07419 -10.84744 -10.80613 -10.36564 -9.19407 -8.34376 -8.33309 -6.40891 0.56893 0.60742 0.72566 1.25292 1.36259 1.37213 1.42496 1.50338 2.28414 2.33670 2.81501 2.99954 3.00657 3.23561 3.54331 3.79295 3.82598 4.02464 4.08235 4.17130 4.25684 4.25968 4.27984 4.32880 4.38429 4.44004 4.48078 4.52651 4.60465 4.68352 4.73031 4.75557 4.92917 4.99064 5.01731 5.08077 5.14223 5.16927 5.31476 5.33413 5.33876 5.51169 5.55182 5.62592 5.68021 5.76559 6.17311 6.39952 6.60083 6.64640 6.75119 7.24298 7.43891 8.81430 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.001603 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.591098 B =17460.754942 C =18317.098143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.105 3.895 4 N -0.285 5.285 5 C -0.010 4.010 6 C -0.057 4.057 7 C 0.219 3.781 8 N -0.736 5.736 9 C 0.256 3.744 10 C -0.233 4.233 11 C -0.032 4.032 12 C -0.283 4.283 13 C 0.152 3.848 14 O -0.338 6.338 15 C 0.089 3.911 16 C -0.006 4.006 17 C -0.537 4.537 18 H 0.043 0.957 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.251 1.251 25 C -0.250 4.250 26 N -0.296 5.296 27 N -0.117 5.117 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.144 0.856 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.400 0.600 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.270 0.730 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.087 -24.201 -4.656 41.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.078 5.078 5 C -0.163 4.163 6 C -0.197 4.197 7 C 0.094 3.906 8 N -0.366 5.366 9 C 0.151 3.849 10 C -0.255 4.255 11 C -0.051 4.051 12 C -0.303 4.303 13 C 0.106 3.894 14 O -0.252 6.252 15 C 0.014 3.986 16 C -0.044 4.044 17 C -0.575 4.575 18 H 0.061 0.939 19 C -0.183 4.183 20 N -0.582 5.582 21 Si 0.771 3.229 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.175 1.175 25 C -0.273 4.273 26 N -0.162 5.162 27 N -0.096 5.096 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.251 0.749 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.234 0.766 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -33.117 -25.043 -3.301 41.651 hybrid contribution 0.275 1.420 0.022 1.447 sum -32.842 -23.623 -3.280 40.588 Atomic orbital electron populations 1.21683 0.92319 1.03099 1.03309 1.21758 0.98193 0.94265 1.02920 1.22699 0.70305 1.00683 1.07736 1.47843 1.10531 1.31633 1.17760 1.24123 0.89771 1.02556 0.99818 1.22125 0.96329 1.03680 0.97527 1.19473 0.89713 0.85717 0.95713 1.44609 1.26412 1.27737 1.37813 1.17359 0.86352 0.89465 0.91693 1.20781 0.99190 1.04640 1.00883 1.20969 0.94501 0.92120 0.97475 1.21230 1.04760 1.02649 1.01688 1.19069 0.93186 0.85556 0.91576 1.86002 1.43842 1.37954 1.57420 1.22641 0.83675 0.94559 0.97692 1.19448 0.95785 0.92828 0.96309 1.21125 1.09283 1.10012 1.17102 0.93900 1.25850 0.95313 0.97106 0.99984 1.70024 1.23009 1.21596 1.43541 0.85694 0.80274 0.77678 0.79273 1.19068 1.20275 1.17524 1.19745 1.00060 1.00241 1.07275 1.75089 1.10475 1.16026 1.14644 1.78266 0.96350 1.18924 1.16045 0.91887 0.91653 0.90721 0.91558 0.92194 0.87312 0.83856 0.74881 0.87473 0.90888 0.76565 0.83172 0.83346 0.86424 0.92355 0.92576 0.95440 0.95699 0.92087 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.13 9.91 71.98 0.71 0.58 16 2 C -0.13 -0.59 6.06 30.60 0.19 -0.40 16 3 C 0.10 0.30 6.46 86.38 0.56 0.86 16 4 N -0.28 -3.23 3.44 -347.72 -1.20 -4.42 16 5 C -0.01 -0.09 11.50 83.49 0.96 0.87 16 6 C -0.06 -0.89 6.62 41.60 0.28 -0.61 16 7 C 0.22 2.97 5.47 85.63 0.47 3.44 16 8 N -0.74 -13.53 5.72 -343.18 -1.96 -15.49 16 9 C 0.26 6.12 6.65 38.20 0.25 6.37 16 10 C -0.23 -4.99 9.31 22.42 0.21 -4.78 16 11 C -0.03 -0.78 10.03 22.24 0.22 -0.56 16 12 C -0.28 -8.99 9.04 22.39 0.20 -8.78 16 13 C 0.15 5.41 6.68 22.49 0.15 5.56 16 14 O -0.34 -14.00 10.13 -92.47 -0.94 -14.94 16 15 C 0.09 3.87 4.68 71.98 0.34 4.21 16 16 C -0.01 -0.31 4.41 29.85 0.13 -0.18 16 17 C -0.54 -31.50 9.66 25.60 0.25 -31.26 16 18 H 0.04 2.70 7.99 -2.91 -0.02 2.68 16 19 C 0.02 0.92 5.47 84.66 0.46 1.39 16 20 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 21 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 25 C -0.25 -7.57 9.83 22.49 0.22 -7.35 16 26 N -0.30 -6.75 12.41 -48.60 -0.60 -7.35 16 27 N -0.12 -2.36 12.91 37.02 0.48 -1.89 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.54 8.12 -2.39 -0.02 0.52 16 33 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.14 -0.60 8.07 -2.39 -0.02 -0.62 16 35 H 0.23 -0.07 8.06 -2.91 -0.02 -0.09 16 36 H 0.11 0.85 7.95 -2.39 -0.02 0.84 16 37 H 0.07 1.10 7.95 -2.39 -0.02 1.08 16 38 H 0.40 7.44 8.47 -92.71 -0.79 6.66 16 39 H 0.15 2.21 6.73 -2.91 -0.02 2.19 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.12 3.86 6.29 -2.91 -0.02 3.85 16 42 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 43 H 0.06 2.40 7.67 -2.39 -0.02 2.38 16 44 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 45 H 0.02 1.22 7.57 -2.39 -0.02 1.20 16 46 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -78.18 393.42 3.69 -74.49 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.13 Total: 11.96 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 5.60 Total: -30.64 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.99 Total: -87.75 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.94 Total: -14.94 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -78.18 3.69 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865424052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.465 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds