Wall clock time and date at job start Tue Mar 31 2020 15:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00077 * 2 1 4 4 N 1.46900 * 109.47081 * 124.99473 * 3 2 1 5 5 C 1.46850 * 110.99924 * 45.79297 * 4 3 2 6 6 C 1.53040 * 109.52240 * 185.83881 * 5 4 3 7 7 C 1.53117 * 109.27707 * 300.81592 * 6 5 4 8 8 N 1.46497 * 109.52486 * 177.56076 * 7 6 5 9 9 C 1.34778 * 120.00254 * 85.31767 * 8 7 6 10 10 O 1.21582 * 119.99789 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00453 * 180.02562 * 9 8 7 12 12 C 1.39458 * 120.00181 * 175.45224 * 11 9 8 13 13 C 1.38645 * 119.64522 * 186.28617 * 12 11 9 14 14 C 1.40823 * 118.67059 * 180.02562 * 13 12 11 15 15 C 1.41540 * 120.99761 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99874 * 201.14762 * 15 14 13 17 17 C 1.40033 * 120.00195 * 21.14924 * 15 14 13 18 18 N 1.30748 * 119.99595 * 12.11114 * 17 15 14 19 19 Si 1.86790 * 120.00294 * 192.10961 * 17 15 14 20 20 H 1.48502 * 109.47294 * 60.00034 * 19 17 15 21 21 H 1.48506 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47046 * 300.00097 * 19 17 15 23 23 C 1.41162 * 118.00341 * 0.02562 * 14 13 12 24 24 C 1.36595 * 119.13359 * 0.02562 * 23 14 13 25 25 N 1.32074 * 121.25167 * 359.71837 * 24 23 14 26 26 C 1.53124 * 109.16286 * 57.65566 * 7 6 5 27 27 C 1.46852 * 110.99933 * 169.99841 * 4 3 2 28 28 H 1.07994 * 120.00002 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00061 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47205 * 244.99680 * 3 2 1 32 32 H 1.09004 * 109.47260 * 4.99830 * 3 2 1 33 33 H 1.09001 * 109.45907 * 305.85111 * 5 4 3 34 34 H 1.08999 * 109.46454 * 65.82076 * 5 4 3 35 35 H 1.09001 * 109.50389 * 180.87909 * 6 5 4 36 36 H 1.09000 * 109.50709 * 60.75851 * 6 5 4 37 37 H 1.09003 * 109.57771 * 297.72095 * 7 6 5 38 38 H 0.97001 * 120.00350 * 265.31817 * 8 7 6 39 39 H 0.97001 * 119.99909 * 355.45771 * 11 9 8 40 40 H 1.07996 * 120.66461 * 0.03029 * 13 12 11 41 41 H 0.96995 * 119.99733 * 180.02562 * 18 17 15 42 42 H 1.08011 * 120.43318 * 179.97438 * 23 14 13 43 43 H 1.07992 * 119.37168 * 179.97438 * 24 23 14 44 44 H 1.08997 * 109.50455 * 182.40407 * 26 7 6 45 45 H 1.09001 * 109.53045 * 62.30162 * 26 7 6 46 46 H 1.09002 * 109.46443 * 294.18071 * 27 4 3 47 47 H 1.09000 * 109.46058 * 54.15501 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2385 6 6 4.5865 0.0752 2.5102 7 6 5.5615 1.2547 2.4584 8 7 6.3391 1.3020 3.6990 9 6 7.4569 0.5592 3.8225 10 8 7.8202 -0.1497 2.9040 11 7 8.1721 0.6023 4.9640 12 6 9.2743 -0.2361 5.1284 13 6 9.9255 -0.2809 6.3516 14 6 11.0365 -1.1342 6.4947 15 6 11.7380 -1.2182 7.7212 16 1 12.7530 -1.5865 7.7386 17 6 11.1158 -0.8237 8.9121 18 7 9.8270 -0.6049 8.9349 19 14 12.1271 -0.6102 10.4680 20 1 13.1655 0.4277 10.2449 21 1 11.2392 -0.1899 11.5817 22 1 12.7807 -1.8979 10.8142 23 6 11.4303 -1.9026 5.3779 24 6 10.7269 -1.7906 4.2123 25 7 9.6862 -0.9834 4.1149 26 6 4.7689 2.5555 2.3014 27 6 3.9122 2.4755 1.0358 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6214 1.4026 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 3.0301 -0.7631 1.2787 34 1 4.3823 -0.0478 0.3689 35 1 5.1468 -0.8572 2.5790 36 1 3.9389 0.1764 3.3811 37 1 6.2356 1.1344 1.6103 38 1 6.0495 1.8679 4.4317 39 1 7.9201 1.2164 5.6713 40 1 9.5874 0.3265 7.1781 41 1 9.3961 -0.3313 9.7597 42 1 12.2772 -2.5697 5.4439 43 1 11.0251 -2.3763 3.3554 44 1 5.4595 3.3949 2.2210 45 1 4.1241 2.6963 3.1689 46 1 4.5585 2.3492 0.1672 47 1 3.3358 3.3944 0.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871723301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:02 Heat of formation + Delta-G solvation = 37.893385 kcal Electronic energy + Delta-G solvation = -27425.404901 eV Core-core repulsion = 23608.769061 eV Total energy + Delta-G solvation = -3816.635840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.09099 -39.13846 -37.91256 -35.74822 -34.26716 -33.69709 -33.54045 -31.08848 -30.91116 -30.40475 -28.37446 -26.08559 -25.92634 -23.57732 -23.17032 -21.90313 -21.45888 -20.32716 -19.94391 -19.55778 -17.93703 -17.63807 -16.74853 -16.01248 -15.50001 -15.37890 -15.25654 -14.89465 -14.75678 -14.21607 -14.17721 -14.12933 -13.80337 -13.49942 -13.24482 -13.12770 -12.80549 -12.61532 -12.46234 -12.28368 -12.01621 -11.58082 -11.43038 -11.39648 -11.21919 -11.16956 -10.88426 -10.72895 -10.56332 -10.28335 -10.08355 -9.85992 -9.73524 -9.51418 -9.36284 -8.72705 -8.51552 -7.95733 -7.69043 -6.96242 -6.73257 -4.61355 1.92364 2.73683 2.84106 3.00563 3.03544 3.07518 3.28304 3.73677 3.84585 3.91555 4.44547 4.54906 4.64055 4.71716 4.79520 4.82908 4.91894 5.07090 5.18193 5.19682 5.37217 5.39532 5.48181 5.52858 5.54895 5.65313 5.75064 5.82304 5.90999 5.95376 6.12010 6.27369 6.28615 6.41601 6.58645 6.66869 6.78369 6.83221 6.84960 6.85371 6.96351 7.19643 7.35202 7.48579 7.53393 7.90746 8.14775 8.45016 8.50382 8.76361 8.78035 9.24829 9.78450 10.07823 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002113 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.204346 B =13245.257126 C =13634.808953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C 0.081 3.919 4 N -0.535 5.535 5 C 0.054 3.946 6 C -0.128 4.128 7 C 0.167 3.833 8 N -0.750 5.750 9 C 0.691 3.309 10 O -0.534 6.534 11 N -0.668 5.668 12 C 0.354 3.646 13 C -0.251 4.251 14 C 0.139 3.861 15 C -0.449 4.449 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.791 5.791 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.286 4.286 24 C 0.118 3.882 25 N -0.553 5.553 26 C -0.123 4.123 27 C 0.060 3.940 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.391 0.609 39 H 0.403 0.597 40 H 0.139 0.861 41 H 0.281 0.719 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.037 0.963 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 7.438 -9.984 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.174 4.174 3 C -0.046 4.046 4 N -0.260 5.260 5 C -0.074 4.074 6 C -0.167 4.167 7 C 0.061 3.939 8 N -0.407 5.407 9 C 0.391 3.609 10 O -0.405 6.405 11 N -0.316 5.316 12 C 0.128 3.872 13 C -0.277 4.277 14 C 0.131 3.869 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.310 4.310 24 C -0.035 4.035 25 N -0.273 5.273 26 C -0.161 4.161 27 C -0.069 4.069 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.224 0.776 39 H 0.238 0.762 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.050 6.948 -11.099 20.714 hybrid contribution 0.988 0.421 1.635 1.956 sum -15.062 7.368 -9.465 19.255 Atomic orbital electron populations 1.23824 0.95783 1.01911 1.00454 1.22970 0.96136 0.98215 1.00118 1.21248 0.95131 0.96194 0.92047 1.62127 1.18916 1.03247 1.41690 1.22178 0.95919 0.91889 0.97436 1.22022 0.97257 0.99650 0.97772 1.20718 0.91699 0.94238 0.87204 1.45267 1.26921 1.50019 1.18492 1.16111 0.79967 0.81240 0.83584 1.91001 1.69591 1.41731 1.38193 1.42561 1.29395 1.41724 1.17881 1.17998 0.87173 0.91218 0.90822 1.21781 1.03009 1.07162 0.95700 1.17579 0.90013 0.87246 0.92078 1.19576 1.00470 1.37413 0.90605 0.90116 1.25984 0.94852 0.92371 1.01198 1.69735 1.09726 1.33089 1.29128 0.86252 0.80257 0.79926 0.79620 1.18776 1.20260 1.18895 1.21639 1.05898 1.07143 0.96286 1.21461 0.91098 0.95077 0.95891 1.67205 1.17416 1.12097 1.30535 1.21860 0.98201 0.97269 0.98782 1.22030 0.93974 0.94021 0.96854 0.88525 0.88377 0.87008 0.93932 0.90260 0.90010 0.94565 0.90561 0.91072 0.89845 0.77628 0.76238 0.84350 0.90776 0.88151 0.86143 0.90784 0.90503 0.94475 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.32 29.01 0.42 -0.84 16 2 C -0.16 -1.23 8.56 -36.03 -0.31 -1.54 16 3 C 0.08 0.64 5.72 -4.98 -0.03 0.62 16 4 N -0.53 -5.03 4.80 -236.10 -1.13 -6.16 16 5 C 0.05 0.56 5.00 -3.83 -0.02 0.55 16 6 C -0.13 -1.59 5.67 -26.65 -0.15 -1.74 16 7 C 0.17 2.09 2.52 -67.81 -0.17 1.92 16 8 N -0.75 -10.47 5.09 -58.56 -0.30 -10.76 16 9 C 0.69 13.51 8.49 -86.92 -0.74 12.78 16 10 O -0.53 -12.75 14.26 5.29 0.08 -12.67 16 11 N -0.67 -13.42 5.39 -15.87 -0.09 -13.50 16 12 C 0.35 8.76 7.42 -154.68 -1.15 7.62 16 13 C -0.25 -6.43 8.67 -38.45 -0.33 -6.77 16 14 C 0.14 3.70 5.65 -106.55 -0.60 3.10 16 15 C -0.45 -11.59 9.15 -37.65 -0.34 -11.94 16 16 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 17 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 18 N -0.79 -19.39 10.50 55.55 0.58 -18.81 16 19 Si 0.92 17.93 29.58 -169.99 -5.03 12.90 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.29 -7.12 9.85 -39.07 -0.38 -7.51 16 24 C 0.12 2.92 11.10 -18.04 -0.20 2.72 16 25 N -0.55 -14.49 7.86 -12.76 -0.10 -14.59 16 26 C -0.12 -1.13 5.57 -26.65 -0.15 -1.28 16 27 C 0.06 0.51 5.42 -3.83 -0.02 0.49 16 28 H 0.10 0.59 7.84 -52.49 -0.41 0.18 16 29 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.11 0.88 6.47 -52.48 -0.34 0.54 16 31 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.81 5.79 -51.93 -0.30 0.51 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 38 H 0.39 4.28 8.62 -40.82 -0.35 3.93 16 39 H 0.40 6.63 8.72 -40.82 -0.36 6.27 16 40 H 0.14 3.52 5.81 -52.49 -0.30 3.21 16 41 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 42 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 43 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -31.84 381.26 -11.57 -43.41 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -7.06 Total: 14.58 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.27 Total: -0.12 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -1.03 Total: -63.83 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.84 -11.57 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.301 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds