Wall clock time and date at job start Tue Mar 31 2020 15:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00077 * 2 1 4 4 N 1.46900 * 109.47081 * 124.99473 * 3 2 1 5 5 C 1.46850 * 110.99924 * 45.79297 * 4 3 2 6 6 C 1.53040 * 109.52240 * 185.83881 * 5 4 3 7 7 C 1.53117 * 109.27707 * 300.81592 * 6 5 4 8 8 N 1.46497 * 109.52486 * 177.56076 * 7 6 5 9 9 C 1.34778 * 120.00254 * 85.31767 * 8 7 6 10 10 O 1.21582 * 119.99789 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00453 * 180.02562 * 9 8 7 12 12 C 1.39458 * 120.00181 * 175.45224 * 11 9 8 13 13 C 1.38645 * 119.64522 * 186.28617 * 12 11 9 14 14 C 1.40823 * 118.67059 * 180.02562 * 13 12 11 15 15 C 1.41540 * 120.99761 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99874 * 201.14762 * 15 14 13 17 17 C 1.40033 * 120.00195 * 21.14924 * 15 14 13 18 18 N 1.30748 * 119.99595 * 12.11114 * 17 15 14 19 19 Si 1.86790 * 120.00294 * 192.10961 * 17 15 14 20 20 H 1.48502 * 109.47294 * 60.00034 * 19 17 15 21 21 H 1.48506 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47046 * 300.00097 * 19 17 15 23 23 C 1.41162 * 118.00341 * 0.02562 * 14 13 12 24 24 C 1.36595 * 119.13359 * 0.02562 * 23 14 13 25 25 N 1.32074 * 121.25167 * 359.71837 * 24 23 14 26 26 C 1.53124 * 109.16286 * 57.65566 * 7 6 5 27 27 C 1.46852 * 110.99933 * 169.99841 * 4 3 2 28 28 H 1.07994 * 120.00002 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00061 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47205 * 244.99680 * 3 2 1 32 32 H 1.09004 * 109.47260 * 4.99830 * 3 2 1 33 33 H 1.09001 * 109.45907 * 305.85111 * 5 4 3 34 34 H 1.08999 * 109.46454 * 65.82076 * 5 4 3 35 35 H 1.09001 * 109.50389 * 180.87909 * 6 5 4 36 36 H 1.09000 * 109.50709 * 60.75851 * 6 5 4 37 37 H 1.09003 * 109.57771 * 297.72095 * 7 6 5 38 38 H 0.97001 * 120.00350 * 265.31817 * 8 7 6 39 39 H 0.97001 * 119.99909 * 355.45771 * 11 9 8 40 40 H 1.07996 * 120.66461 * 0.03029 * 13 12 11 41 41 H 0.96995 * 119.99733 * 180.02562 * 18 17 15 42 42 H 1.08011 * 120.43318 * 179.97438 * 23 14 13 43 43 H 1.07992 * 119.37168 * 179.97438 * 24 23 14 44 44 H 1.08997 * 109.50455 * 182.40407 * 26 7 6 45 45 H 1.09001 * 109.53045 * 62.30162 * 26 7 6 46 46 H 1.09002 * 109.46443 * 294.18071 * 27 4 3 47 47 H 1.09000 * 109.46058 * 54.15501 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2385 6 6 4.5865 0.0752 2.5102 7 6 5.5615 1.2547 2.4584 8 7 6.3391 1.3020 3.6990 9 6 7.4569 0.5592 3.8225 10 8 7.8202 -0.1497 2.9040 11 7 8.1721 0.6023 4.9640 12 6 9.2743 -0.2361 5.1284 13 6 9.9255 -0.2809 6.3516 14 6 11.0365 -1.1342 6.4947 15 6 11.7380 -1.2182 7.7212 16 1 12.7530 -1.5865 7.7386 17 6 11.1158 -0.8237 8.9121 18 7 9.8270 -0.6049 8.9349 19 14 12.1271 -0.6102 10.4680 20 1 13.1655 0.4277 10.2449 21 1 11.2392 -0.1899 11.5817 22 1 12.7807 -1.8979 10.8142 23 6 11.4303 -1.9026 5.3779 24 6 10.7269 -1.7906 4.2123 25 7 9.6862 -0.9834 4.1149 26 6 4.7689 2.5555 2.3014 27 6 3.9122 2.4755 1.0358 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6214 1.4026 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 3.0301 -0.7631 1.2787 34 1 4.3823 -0.0478 0.3689 35 1 5.1468 -0.8572 2.5790 36 1 3.9389 0.1764 3.3811 37 1 6.2356 1.1344 1.6103 38 1 6.0495 1.8679 4.4317 39 1 7.9201 1.2164 5.6713 40 1 9.5874 0.3265 7.1781 41 1 9.3961 -0.3313 9.7597 42 1 12.2772 -2.5697 5.4439 43 1 11.0251 -2.3763 3.3554 44 1 5.4595 3.3949 2.2210 45 1 4.1241 2.6963 3.1689 46 1 4.5585 2.3492 0.1672 47 1 3.3358 3.3944 0.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871723301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:01 Heat of formation + Delta-G solvation = 17.354120 kcal Electronic energy + Delta-G solvation = -27426.295550 eV Core-core repulsion = 23608.769061 eV Total energy + Delta-G solvation = -3817.526489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52171 -40.36233 -39.49439 -36.79552 -36.03580 -35.47084 -34.48696 -32.44076 -32.02696 -31.76281 -30.09230 -27.92416 -26.83996 -24.40916 -24.28684 -23.76712 -22.96892 -21.63517 -21.17578 -20.24151 -19.52751 -19.34254 -17.95814 -17.29696 -17.01585 -16.45733 -16.29069 -16.14791 -16.00511 -15.93899 -15.83883 -15.08655 -14.96618 -14.81530 -14.67803 -14.33894 -14.19792 -14.06477 -13.82726 -13.21540 -13.13002 -12.85531 -12.79985 -12.67035 -12.31104 -12.20907 -12.12471 -12.01064 -11.91524 -11.65206 -11.49859 -11.41018 -11.21700 -11.16683 -10.44321 -10.03111 -9.90915 -9.60554 -9.24354 -8.81241 -8.57349 -6.57047 0.85997 1.03131 1.36170 1.41967 1.53339 1.60459 1.64742 2.20650 2.30023 2.85503 3.01044 3.19464 3.70974 3.78482 3.81558 3.99194 4.06792 4.16903 4.21246 4.26175 4.38979 4.45468 4.55182 4.62679 4.70991 4.73255 4.78923 4.87533 4.88631 4.92859 4.95536 5.02047 5.06755 5.12173 5.16498 5.26095 5.28482 5.52637 5.60266 5.67833 5.72601 5.84492 5.87568 6.01432 6.06419 6.12877 6.28735 6.58791 6.81281 6.84768 7.03350 7.65543 7.93182 8.27414 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002113 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.204346 B =13245.257126 C =13634.808953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C 0.082 3.918 4 N -0.538 5.538 5 C 0.061 3.939 6 C -0.121 4.121 7 C 0.165 3.835 8 N -0.726 5.726 9 C 0.689 3.311 10 O -0.580 6.580 11 N -0.661 5.661 12 C 0.351 3.649 13 C -0.268 4.268 14 C 0.109 3.891 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.035 3.965 18 N -0.811 5.811 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.261 1.261 23 C -0.299 4.299 24 C 0.112 3.888 25 N -0.580 5.580 26 C -0.111 4.111 27 C 0.059 3.941 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.410 0.590 39 H 0.419 0.581 40 H 0.137 0.863 41 H 0.292 0.708 42 H 0.115 0.885 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 9.008 -9.043 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C -0.045 4.045 4 N -0.263 5.263 5 C -0.067 4.067 6 C -0.161 4.161 7 C 0.060 3.940 8 N -0.383 5.383 9 C 0.389 3.611 10 O -0.455 6.455 11 N -0.310 5.310 12 C 0.123 3.877 13 C -0.294 4.294 14 C 0.101 3.899 15 C -0.508 4.508 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.437 5.437 19 Si 0.811 3.189 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.185 1.185 23 C -0.323 4.323 24 C -0.042 4.042 25 N -0.300 5.300 26 C -0.149 4.149 27 C -0.070 4.070 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.257 0.743 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.163 0.837 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.471 8.568 -10.156 21.950 hybrid contribution 1.312 -0.077 1.311 1.856 sum -16.159 8.491 -8.845 20.284 Atomic orbital electron populations 1.24003 0.95509 1.02818 0.98810 1.22992 0.96605 0.98054 1.01647 1.21296 0.94962 0.96737 0.91472 1.62147 1.18876 1.02642 1.42644 1.22046 0.95663 0.93160 0.95846 1.21911 0.97112 0.97894 0.99143 1.20870 0.91238 0.96499 0.85363 1.45080 1.25000 1.48592 1.19662 1.16293 0.80839 0.81294 0.82691 1.90967 1.71033 1.43849 1.39647 1.42441 1.28425 1.41345 1.18763 1.18215 0.87907 0.91171 0.90360 1.21773 1.03683 1.07849 0.96051 1.18034 0.90821 0.87945 0.93136 1.19882 1.00870 1.38684 0.91379 0.89795 1.26873 0.95904 0.91281 1.04088 1.69766 1.11055 1.32216 1.30666 0.85108 0.78571 0.79882 0.75292 1.18379 1.18908 1.18521 1.21818 1.06640 1.07601 0.96203 1.21894 0.90668 0.94892 0.96700 1.67325 1.18302 1.13131 1.31286 1.21808 0.98137 0.95223 0.99774 1.22108 0.94025 0.94675 0.96146 0.87439 0.87687 0.87641 0.93846 0.88886 0.89481 0.95537 0.94013 0.90567 0.92497 0.75415 0.74345 0.84523 0.89683 0.86709 0.83719 0.89564 0.89246 0.94935 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.17 -2.52 8.56 25.65 0.22 -2.30 16 3 C 0.08 1.16 5.72 85.56 0.49 1.65 16 4 N -0.54 -9.22 4.80 -900.90 -4.32 -13.54 16 5 C 0.06 1.27 5.00 86.33 0.43 1.71 16 6 C -0.12 -3.04 5.67 30.65 0.17 -2.87 16 7 C 0.17 4.09 2.52 45.07 0.11 4.21 16 8 N -0.73 -19.90 5.09 -457.44 -2.33 -22.23 16 9 C 0.69 27.35 8.49 179.06 1.52 28.87 16 10 O -0.58 -28.65 14.26 -3.97 -0.06 -28.71 16 11 N -0.66 -26.86 5.39 -322.37 -1.74 -28.59 16 12 C 0.35 17.78 7.42 132.76 0.98 18.77 16 13 C -0.27 -14.06 8.67 23.00 0.20 -13.86 16 14 C 0.11 5.93 5.65 -21.11 -0.12 5.81 16 15 C -0.48 -24.87 9.15 23.52 0.22 -24.66 16 16 H 0.08 4.16 7.88 -2.91 -0.02 4.14 16 17 C 0.04 1.68 5.31 85.29 0.45 2.13 16 18 N -0.81 -39.55 10.50 21.84 0.23 -39.32 16 19 Si 0.99 35.80 29.58 68.60 2.03 37.83 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 21 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 C -0.30 -15.21 9.85 22.60 0.22 -14.98 16 24 C 0.11 5.60 11.10 84.27 0.94 6.54 16 25 N -0.58 -31.18 7.86 -194.27 -1.53 -32.70 16 26 C -0.11 -1.81 5.57 30.65 0.17 -1.64 16 27 C 0.06 0.88 5.42 86.32 0.47 1.35 16 28 H 0.11 1.04 7.84 -2.91 -0.02 1.02 16 29 H 0.10 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.11 1.62 6.47 -2.91 -0.02 1.60 16 31 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.09 1.07 7.79 -2.39 -0.02 1.05 16 33 H 0.09 1.71 5.79 -2.39 -0.01 1.70 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 38 H 0.41 8.29 8.62 -92.71 -0.80 7.49 16 39 H 0.42 13.70 8.72 -92.71 -0.81 12.90 16 40 H 0.14 7.08 5.81 -2.91 -0.02 7.07 16 41 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 42 H 0.11 5.32 8.06 -2.91 -0.02 5.29 16 43 H 0.15 6.32 8.06 -2.91 -0.02 6.29 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 Total: -1.00 -70.42 381.26 -0.88 -71.30 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.61 Total: 46.37 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 7.45 Total: 9.59 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -9.69 Total: -136.39 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.06 Total: -28.71 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -70.42 -0.88 -71.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.654 kcal (2) G-P(sol) polarization free energy of solvation -70.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds