Wall clock time and date at job start Tue Mar 31 2020 15:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50698 * 120.00149 * 2 1 4 4 N 1.46902 * 109.47064 * 125.00378 * 3 2 1 5 5 C 1.46846 * 111.00386 * 45.79104 * 4 3 2 6 6 C 1.53033 * 109.52623 * 185.84206 * 5 4 3 7 7 C 1.53125 * 109.27532 * 300.81930 * 6 5 4 8 8 N 1.46499 * 109.51937 * 177.55806 * 7 6 5 9 9 C 1.34775 * 120.00039 * 85.31826 * 8 7 6 10 10 O 1.21585 * 120.00023 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.39239 * 120.00405 * 174.85891 * 11 9 8 13 13 C 1.39684 * 119.57896 * 185.40099 * 12 11 9 14 14 C 1.38649 * 119.49670 * 179.72274 * 13 12 11 15 15 C 1.38357 * 118.66941 * 0.54049 * 14 13 12 16 16 C 1.40568 * 119.13178 * 359.72381 * 15 14 13 17 17 C 1.41332 * 119.78923 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99932 * 359.97438 * 17 16 15 19 19 C 1.40028 * 120.00253 * 179.97438 * 17 16 15 20 20 N 1.30742 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46929 * 90.00291 * 21 19 17 23 23 H 1.48500 * 109.46706 * 209.99905 * 21 19 17 24 24 H 1.48494 * 109.47223 * 330.00372 * 21 19 17 25 25 N 1.31909 * 119.57564 * 5.67229 * 12 11 9 26 26 C 1.53113 * 109.16074 * 57.65644 * 7 6 5 27 27 C 1.46852 * 111.00053 * 170.00054 * 4 3 2 28 28 H 1.08005 * 120.00232 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00065 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47064 * 244.99982 * 3 2 1 32 32 H 1.08993 * 109.47291 * 5.00400 * 3 2 1 33 33 H 1.09002 * 109.46067 * 305.85573 * 5 4 3 34 34 H 1.09002 * 109.46417 * 65.82277 * 5 4 3 35 35 H 1.08994 * 109.50267 * 180.87788 * 6 5 4 36 36 H 1.09006 * 109.50223 * 60.75558 * 6 5 4 37 37 H 1.08995 * 109.57499 * 297.71687 * 7 6 5 38 38 H 0.97003 * 120.00247 * 265.31580 * 8 7 6 39 39 H 0.96999 * 119.99588 * 354.85018 * 11 9 8 40 40 H 1.08000 * 120.24972 * 359.97438 * 13 12 11 41 41 H 1.07999 * 120.66024 * 180.24264 * 14 13 12 42 42 H 1.07998 * 120.43147 * 179.74575 * 15 14 13 43 43 H 0.96997 * 119.99947 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.50439 * 182.40388 * 26 7 6 45 45 H 1.08997 * 109.54076 * 62.30153 * 26 7 6 46 46 H 1.09000 * 109.46182 * 294.17477 * 27 4 3 47 47 H 1.09005 * 109.45848 * 54.15307 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 3.7353 0.0671 1.2383 6 6 4.5866 0.0750 2.5099 7 6 5.5616 1.2546 2.4581 8 7 6.3393 1.3018 3.6987 9 6 7.4571 0.5590 3.8220 10 8 7.8199 -0.1506 2.9037 11 7 8.1729 0.6027 4.9632 12 6 9.2660 -0.2431 5.1323 13 6 9.9323 -0.2716 6.3597 14 6 11.0169 -1.1187 6.5280 15 6 11.4152 -1.9069 5.4630 16 6 10.7070 -1.8286 4.2512 17 6 11.1016 -2.6279 3.1545 18 1 11.9449 -3.2958 3.2488 19 6 10.3989 -2.5538 1.9455 20 7 9.3782 -1.7449 1.8311 21 14 10.9200 -3.6109 0.4962 22 1 10.2019 -4.9097 0.5473 23 1 10.5884 -2.9114 -0.7711 24 1 12.3839 -3.8518 0.5602 25 7 9.6624 -1.0031 4.1297 26 6 4.7690 2.5552 2.3013 27 6 3.9123 2.4754 1.0357 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 2.6213 1.4025 -0.9314 32 1 1.3586 2.1316 0.0896 33 1 3.0302 -0.7632 1.2785 34 1 4.3823 -0.0479 0.3687 35 1 5.1468 -0.8574 2.5785 36 1 3.9390 0.1762 3.3808 37 1 6.2356 1.1343 1.6100 38 1 6.0497 1.8676 4.4315 39 1 7.9265 1.2235 5.6667 40 1 9.6025 0.3583 7.1726 41 1 11.5434 -1.1588 7.4702 42 1 12.2589 -2.5738 5.5614 43 1 8.8913 -1.6938 0.9938 44 1 5.4595 3.3948 2.2210 45 1 4.1243 2.6961 3.1688 46 1 4.5585 2.3491 0.1671 47 1 3.3358 3.3943 0.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:04 Heat of formation + Delta-G solvation = 39.281455 kcal Electronic energy + Delta-G solvation = -28325.606005 eV Core-core repulsion = 24509.030356 eV Total energy + Delta-G solvation = -3816.575649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26702 -40.23482 -39.26011 -36.68872 -35.77574 -34.80603 -34.39740 -32.23477 -32.00395 -31.75646 -30.49212 -27.51658 -26.74911 -24.38937 -24.33897 -23.39450 -22.87157 -21.35034 -21.08674 -20.24120 -19.73408 -18.69027 -18.08866 -17.35335 -16.59561 -16.29212 -16.25497 -16.09317 -15.99487 -15.85917 -15.58940 -15.00404 -14.76720 -14.74140 -14.61077 -14.11724 -13.95935 -13.79624 -13.68363 -13.17064 -12.90352 -12.78164 -12.71580 -12.54193 -12.30635 -12.28016 -12.19529 -12.06253 -11.76118 -11.61916 -11.47353 -11.36721 -10.84878 -10.79422 -10.45512 -9.88556 -9.76525 -9.26191 -9.08089 -8.75864 -8.00751 -6.39482 0.98493 1.30222 1.35132 1.38299 1.50472 1.53372 1.83930 2.26570 2.60353 3.00807 3.05676 3.39104 3.75028 3.82282 4.01209 4.09889 4.10512 4.21460 4.26189 4.37202 4.40878 4.48320 4.56920 4.64325 4.71909 4.74995 4.78855 4.86843 4.88295 4.95818 4.98397 5.04009 5.07637 5.08952 5.19596 5.25712 5.34237 5.69177 5.71488 5.79068 5.83406 5.88801 5.94494 6.03502 6.07789 6.12540 6.34767 6.45106 6.83908 7.09484 7.31659 8.06844 8.40542 8.59612 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003254 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.665458 B = 8601.578875 C =10258.170779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.176 4.176 3 C 0.082 3.918 4 N -0.535 5.535 5 C 0.062 3.938 6 C -0.117 4.117 7 C 0.171 3.829 8 N -0.732 5.732 9 C 0.656 3.344 10 O -0.515 6.515 11 N -0.662 5.662 12 C 0.364 3.636 13 C -0.346 4.346 14 C -0.034 4.034 15 C -0.332 4.332 16 C 0.236 3.764 17 C -0.467 4.467 18 H 0.085 0.915 19 C 0.010 3.990 20 N -0.682 5.682 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.255 1.255 25 N -0.506 5.506 26 C -0.108 4.108 27 C 0.058 3.942 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.405 0.595 39 H 0.417 0.583 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.267 0.733 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.027 0.973 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.969 10.295 -1.458 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C -0.045 4.045 4 N -0.260 5.260 5 C -0.067 4.067 6 C -0.156 4.156 7 C 0.065 3.935 8 N -0.391 5.391 9 C 0.354 3.646 10 O -0.382 6.382 11 N -0.313 5.313 12 C 0.124 3.876 13 C -0.372 4.372 14 C -0.058 4.058 15 C -0.355 4.355 16 C 0.110 3.890 17 C -0.497 4.497 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.301 5.301 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.179 1.179 25 N -0.225 5.225 26 C -0.147 4.147 27 C -0.070 4.070 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.240 0.760 39 H 0.254 0.746 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.045 0.955 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.543 9.820 -2.887 20.311 hybrid contribution 1.218 -0.413 0.140 1.294 sum -16.325 9.407 -2.746 19.040 Atomic orbital electron populations 1.24001 0.95360 1.02891 0.98636 1.22980 0.96695 0.97979 1.01815 1.21304 0.94972 0.96801 0.91419 1.62169 1.18772 1.02535 1.42503 1.22027 0.95556 0.93152 0.95923 1.21858 0.96988 0.97964 0.98797 1.20700 0.91012 0.96071 0.85702 1.45073 1.25585 1.49322 1.19156 1.16760 0.81369 0.82537 0.83885 1.91374 1.68650 1.40291 1.37896 1.42412 1.29111 1.40696 1.19042 1.18865 0.87394 0.90437 0.90867 1.20923 1.05767 1.12790 0.97673 1.21023 0.94425 0.92839 0.97498 1.21798 1.07056 1.10174 0.96453 1.18893 0.87746 0.89856 0.92457 1.19875 1.13437 1.20502 0.95933 0.89716 1.27031 0.94941 0.97207 1.02390 1.70573 1.10587 1.24554 1.24404 0.85378 0.79860 0.78500 0.76996 1.19157 1.19972 1.17859 1.68666 1.16368 1.09755 1.27691 1.21776 0.98019 0.95273 0.99589 1.22118 0.94016 0.94664 0.96219 0.87647 0.87236 0.87943 0.94151 0.88619 0.89657 0.96190 0.94590 0.90475 0.93476 0.75968 0.74612 0.85031 0.84484 0.87833 0.92254 0.89806 0.89053 0.95455 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 14.32 67.79 0.97 -1.36 16 2 C -0.18 -2.97 8.56 25.66 0.22 -2.75 16 3 C 0.08 1.35 5.72 85.56 0.49 1.84 16 4 N -0.53 -10.59 4.80 -900.91 -4.32 -14.92 16 5 C 0.06 1.52 5.00 86.32 0.43 1.95 16 6 C -0.12 -3.34 5.67 30.65 0.17 -3.16 16 7 C 0.17 4.80 2.52 45.07 0.11 4.91 16 8 N -0.73 -21.57 5.08 -457.44 -2.33 -23.89 16 9 C 0.66 27.59 8.49 179.05 1.52 29.11 16 10 O -0.51 -27.68 11.77 -3.98 -0.05 -27.73 16 11 N -0.66 -26.31 5.39 -322.11 -1.74 -28.04 16 12 C 0.36 18.13 7.43 133.26 0.99 19.12 16 13 C -0.35 -15.06 9.96 22.72 0.23 -14.83 16 14 C -0.03 -1.49 10.15 22.40 0.23 -1.27 16 15 C -0.33 -17.18 9.83 22.87 0.22 -16.95 16 16 C 0.24 14.01 6.55 40.19 0.26 14.28 16 17 C -0.47 -27.30 9.14 23.47 0.21 -27.08 16 18 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 19 C 0.01 0.56 5.50 85.29 0.47 1.03 16 20 N -0.68 -40.53 8.99 21.84 0.20 -40.34 16 21 Si 0.97 41.91 29.56 68.60 2.03 43.94 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 25 N -0.51 -29.87 5.74 -186.37 -1.07 -30.94 16 26 C -0.11 -2.03 5.57 30.64 0.17 -1.86 16 27 C 0.06 1.03 5.42 86.32 0.47 1.50 16 28 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.11 1.20 7.84 -2.91 -0.02 1.17 16 30 H 0.10 1.88 6.48 -2.91 -0.02 1.86 16 31 H 0.04 0.69 8.08 -2.38 -0.02 0.67 16 32 H 0.10 1.27 7.79 -2.39 -0.02 1.25 16 33 H 0.09 1.99 5.79 -2.39 -0.01 1.97 16 34 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16 38 H 0.40 8.56 8.62 -92.71 -0.80 7.76 16 39 H 0.42 12.04 8.71 -92.71 -0.81 11.24 16 40 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 1.35 8.12 -2.38 -0.02 1.33 16 Total: -1.00 -77.09 378.71 -0.73 -77.81 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.62 Total: 39.63 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.17 Total: 4.48 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -9.26 Total: -138.13 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -77.09 -0.73 -77.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.094 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds