Wall clock time and date at job start Tue Mar 31 2020 17:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.49534 * 2 1 4 4 C 1.53191 * 109.52439 * 239.91364 * 2 1 3 5 5 N 1.46925 * 108.77612 * 185.39848 * 4 2 1 6 6 C 1.36937 * 120.63379 * 233.59049 * 5 4 2 7 7 H 1.07989 * 120.00243 * 151.83136 * 6 5 4 8 8 C 1.38815 * 119.99817 * 331.82597 * 6 5 4 9 9 N 1.31627 * 119.99858 * 343.09310 * 8 6 5 10 10 Si 1.86799 * 119.99849 * 163.08469 * 8 6 5 11 11 H 1.48497 * 109.46943 * 60.00428 * 10 8 6 12 12 H 1.48507 * 109.46846 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47489 * 300.00429 * 10 8 6 14 14 C 1.46929 * 118.73348 * 53.61005 * 5 4 2 15 15 C 1.53187 * 108.77665 * 306.39001 * 14 5 4 16 16 C 1.53040 * 109.31370 * 54.63971 * 15 14 5 17 17 H 1.08997 * 109.44881 * 58.64521 * 16 15 14 18 18 N 1.46496 * 109.46204 * 178.61316 * 16 15 14 19 19 C 1.34780 * 120.00202 * 275.07104 * 18 16 15 20 20 O 1.21277 * 119.99493 * 359.97438 * 19 18 16 21 21 C 1.50693 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47381 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47350 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.47160 * 299.99881 * 23 22 21 25 25 F 1.39895 * 109.47133 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47223 * 300.00467 * 24 23 22 27 27 C 1.52998 * 109.46727 * 60.00363 * 24 23 22 28 28 C 1.52998 * 109.47369 * 299.99728 * 21 19 18 29 29 H 1.08996 * 109.47455 * 299.94432 * 1 2 3 30 30 H 1.09007 * 109.46839 * 59.93475 * 1 2 3 31 31 H 1.08993 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.59002 * 305.19240 * 4 2 1 33 33 H 1.09005 * 109.58706 * 65.61195 * 4 2 1 34 34 H 0.96996 * 119.99588 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.58727 * 66.18478 * 14 5 4 36 36 H 1.09006 * 109.58204 * 186.46172 * 14 5 4 37 37 H 1.08999 * 109.49911 * 294.68595 * 15 14 5 38 38 H 1.09003 * 109.49512 * 174.58895 * 15 14 5 39 39 H 0.97006 * 120.00046 * 95.06484 * 18 16 15 40 40 H 1.09009 * 109.46873 * 59.99551 * 21 19 18 41 41 H 1.09002 * 109.46662 * 59.99620 * 22 21 19 42 42 H 1.09000 * 109.46964 * 300.00470 * 22 21 19 43 43 H 1.09003 * 109.46933 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47103 * 60.00447 * 23 22 21 45 45 H 1.09000 * 109.47539 * 60.00023 * 27 24 23 46 46 H 1.08999 * 109.47136 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.46806 * 299.99868 * 28 21 19 48 48 H 1.09003 * 109.47056 * 60.00083 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5053 -0.8285 -1.1689 6 6 4.2944 -0.3784 -2.1935 7 1 5.2967 -0.0311 -1.9908 8 6 3.8061 -0.3688 -3.4929 9 7 2.7431 -1.0810 -3.8017 10 14 4.6573 0.6551 -4.8030 11 1 6.0629 0.1995 -4.9515 12 1 3.9453 0.4950 -6.0965 13 1 4.6401 2.0849 -4.4027 14 6 4.1058 -1.4256 0.0318 15 6 3.5707 -0.6940 1.2667 16 6 2.0407 -0.7227 1.2486 17 1 1.6973 -1.7571 1.2355 18 7 1.5258 -0.0526 2.4453 19 6 1.3977 -0.7378 3.5989 20 8 1.7084 -1.9091 3.6460 21 6 0.8686 -0.0483 4.8299 22 6 0.8231 -1.0429 5.9917 23 6 0.2852 -0.3431 7.2414 24 6 1.2028 0.8256 7.6063 25 9 0.7113 1.4651 8.7493 26 9 2.4920 0.3450 7.8593 27 6 1.2482 1.8202 6.4445 28 6 1.7863 1.1204 5.1942 29 1 -0.3634 0.5129 0.8904 30 1 -0.3633 0.5149 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6064 -1.7218 -1.2978 33 1 1.7645 -0.1582 -2.1388 34 1 2.4021 -1.0745 -4.7098 35 1 3.8386 -2.4809 0.0878 36 1 5.1903 -1.3253 -0.0136 37 1 3.9154 0.3401 1.2547 38 1 3.9333 -1.1884 2.1680 39 1 1.2770 0.8842 2.4074 40 1 -0.1361 0.3262 4.6331 41 1 1.8275 -1.4178 6.1885 42 1 0.1691 -1.8753 5.7319 43 1 0.2533 -1.0516 8.0692 44 1 -0.7192 0.0313 7.0442 45 1 0.2437 2.1947 6.2473 46 1 1.9022 2.6526 6.7042 47 1 2.7908 0.7459 5.3910 48 1 1.8183 1.8289 4.3665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942981257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:13 Heat of formation + Delta-G solvation = -145.476618 kcal Electronic energy + Delta-G solvation = -29722.717239 eV Core-core repulsion = 25447.440693 eV Total energy + Delta-G solvation = -4275.276546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.25089 -47.23461 -40.26272 -38.16410 -36.91941 -34.55905 -32.49119 -31.86639 -31.46663 -30.66712 -29.18326 -25.98021 -25.25319 -23.74042 -23.50064 -22.09758 -20.91777 -20.72966 -19.97024 -19.21825 -17.74624 -17.23661 -17.13057 -16.63502 -16.51237 -15.92331 -15.09230 -14.84907 -14.42784 -14.38574 -14.06255 -13.83571 -13.76970 -13.64431 -13.50947 -13.27227 -13.12805 -12.91287 -12.79951 -12.73283 -12.40214 -12.10719 -12.05391 -11.89166 -11.62220 -11.49373 -11.32713 -11.09071 -11.06431 -10.76645 -10.66532 -10.51145 -10.38184 -10.19988 -10.02521 -9.88075 -9.67153 -9.41261 -8.71740 -8.47284 -6.70268 -5.81680 -3.24091 2.71106 3.26402 3.36853 3.41894 3.42416 3.43444 3.70382 3.98459 4.01401 4.42684 4.47317 4.52997 4.66746 4.74231 4.83950 4.96988 5.17105 5.20167 5.28029 5.31122 5.36196 5.38680 5.43816 5.54062 5.58563 5.62006 5.65487 5.79231 5.85513 5.97552 6.05459 6.11163 6.22263 6.32946 6.44465 6.48706 6.57039 6.66240 6.77770 6.92566 6.97528 7.30708 7.57874 7.69917 7.77853 8.36295 8.42618 9.18636 9.81652 10.38793 11.27101 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.002484 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.569366 B =11269.067193 C =11413.914105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.903 3.097 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.139 4.139 16 C 0.156 3.844 17 H 0.081 0.919 18 N -0.720 5.720 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.157 4.157 24 C 0.286 3.714 25 F -0.205 7.205 26 F -0.198 7.198 27 C -0.156 4.156 28 C -0.111 4.111 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.395 0.605 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 6.270 20.425 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.020 3.980 15 C -0.179 4.179 16 C 0.053 3.947 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.416 6.416 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.195 4.195 24 C 0.250 3.750 25 F -0.185 7.185 26 F -0.179 7.179 27 C -0.194 4.194 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.228 0.772 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.713 5.385 20.291 22.365 hybrid contribution 0.316 1.060 -0.549 1.235 sum -7.397 6.445 19.742 22.045 Atomic orbital electron populations 1.21723 0.95936 1.01443 1.00541 1.22164 0.94649 1.00600 0.96902 0.91482 1.20795 0.83080 0.97048 0.93600 1.44089 1.01716 1.69396 1.16305 1.19145 0.98049 1.35369 0.85746 0.91701 1.25056 0.98546 0.98974 0.97009 1.70018 1.25693 1.40124 1.18879 0.86368 0.79001 0.80429 0.80957 1.20865 1.21631 1.21053 1.20877 0.96675 0.94285 0.86152 1.22377 0.94843 1.01265 0.99464 1.21062 0.93809 0.97172 0.82659 0.90062 1.46326 1.65774 1.14287 1.10587 1.20365 0.78154 0.87133 0.84318 1.90711 1.49802 1.16315 1.84754 1.21441 1.01041 0.96763 0.94151 1.21316 1.03824 0.97465 0.91115 1.22558 0.99559 0.96763 1.00670 1.21158 0.78802 0.92141 0.82919 1.93005 1.87849 1.83496 1.54196 1.93010 1.40639 1.89277 1.94937 1.22519 1.04935 0.98107 0.93797 1.21524 0.99936 0.96443 0.97015 0.93932 0.92626 0.93029 0.96164 0.89055 0.93538 0.96234 0.92581 0.92365 0.92705 0.77176 0.88208 0.89951 0.89562 0.89145 0.88700 0.88492 0.89065 0.90054 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 2 C -0.12 -2.13 2.46 -90.50 -0.22 -2.35 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.18 4.14 4.59 -3.71 -0.02 4.12 16 5 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 6 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 7 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -25.72 11.20 55.49 0.62 -25.10 16 10 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 15 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 16 C 0.16 2.59 1.88 -67.89 -0.13 2.46 16 17 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 18 N -0.72 -9.08 4.26 -53.77 -0.23 -9.31 16 19 C 0.52 6.65 7.12 -10.99 -0.08 6.57 16 20 O -0.54 -9.28 15.64 5.56 0.09 -9.20 16 21 C -0.11 -0.97 2.52 -91.78 -0.23 -1.20 16 22 C -0.10 -0.89 4.37 -26.73 -0.12 -1.00 16 23 C -0.16 -1.11 5.45 -26.73 -0.15 -1.26 16 24 C 0.29 2.40 2.10 -26.73 -0.06 2.35 16 25 F -0.20 -1.97 17.06 2.25 0.04 -1.93 16 26 F -0.20 -2.14 16.03 2.25 0.04 -2.10 16 27 C -0.16 -1.00 5.46 -26.71 -0.15 -1.15 16 28 C -0.11 -0.83 4.98 -26.70 -0.13 -0.96 16 29 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 3.92 7.72 -40.82 -0.32 3.60 16 40 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 42 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 48 H 0.08 0.52 7.57 -51.93 -0.39 0.13 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -31.25 376.49 -8.72 -39.97 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.06 Total: 1.41 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.34 Total: -0.63 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.12 Total: -49.49 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.25 -8.72 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942981257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.502 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds