Wall clock time and date at job start Tue Mar 31 2020 17:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.49534 * 2 1 4 4 C 1.53191 * 109.52439 * 239.91364 * 2 1 3 5 5 N 1.46925 * 108.77612 * 185.39848 * 4 2 1 6 6 C 1.36937 * 120.63379 * 233.59049 * 5 4 2 7 7 H 1.07989 * 120.00243 * 151.83136 * 6 5 4 8 8 C 1.38815 * 119.99817 * 331.82597 * 6 5 4 9 9 N 1.31627 * 119.99858 * 343.09310 * 8 6 5 10 10 Si 1.86799 * 119.99849 * 163.08469 * 8 6 5 11 11 H 1.48497 * 109.46943 * 60.00428 * 10 8 6 12 12 H 1.48507 * 109.46846 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47489 * 300.00429 * 10 8 6 14 14 C 1.46929 * 118.73348 * 53.61005 * 5 4 2 15 15 C 1.53187 * 108.77665 * 306.39001 * 14 5 4 16 16 C 1.53040 * 109.31370 * 54.63971 * 15 14 5 17 17 H 1.08997 * 109.44881 * 58.64521 * 16 15 14 18 18 N 1.46496 * 109.46204 * 178.61316 * 16 15 14 19 19 C 1.34780 * 120.00202 * 275.07104 * 18 16 15 20 20 O 1.21277 * 119.99493 * 359.97438 * 19 18 16 21 21 C 1.50693 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47381 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47350 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.47160 * 299.99881 * 23 22 21 25 25 F 1.39895 * 109.47133 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47223 * 300.00467 * 24 23 22 27 27 C 1.52998 * 109.46727 * 60.00363 * 24 23 22 28 28 C 1.52998 * 109.47369 * 299.99728 * 21 19 18 29 29 H 1.08996 * 109.47455 * 299.94432 * 1 2 3 30 30 H 1.09007 * 109.46839 * 59.93475 * 1 2 3 31 31 H 1.08993 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.59002 * 305.19240 * 4 2 1 33 33 H 1.09005 * 109.58706 * 65.61195 * 4 2 1 34 34 H 0.96996 * 119.99588 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.58727 * 66.18478 * 14 5 4 36 36 H 1.09006 * 109.58204 * 186.46172 * 14 5 4 37 37 H 1.08999 * 109.49911 * 294.68595 * 15 14 5 38 38 H 1.09003 * 109.49512 * 174.58895 * 15 14 5 39 39 H 0.97006 * 120.00046 * 95.06484 * 18 16 15 40 40 H 1.09009 * 109.46873 * 59.99551 * 21 19 18 41 41 H 1.09002 * 109.46662 * 59.99620 * 22 21 19 42 42 H 1.09000 * 109.46964 * 300.00470 * 22 21 19 43 43 H 1.09003 * 109.46933 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47103 * 60.00447 * 23 22 21 45 45 H 1.09000 * 109.47539 * 60.00023 * 27 24 23 46 46 H 1.08999 * 109.47136 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.46806 * 299.99868 * 28 21 19 48 48 H 1.09003 * 109.47056 * 60.00083 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5053 -0.8285 -1.1689 6 6 4.2944 -0.3784 -2.1935 7 1 5.2967 -0.0311 -1.9908 8 6 3.8061 -0.3688 -3.4929 9 7 2.7431 -1.0810 -3.8017 10 14 4.6573 0.6551 -4.8030 11 1 6.0629 0.1995 -4.9515 12 1 3.9453 0.4950 -6.0965 13 1 4.6401 2.0849 -4.4027 14 6 4.1058 -1.4256 0.0318 15 6 3.5707 -0.6940 1.2667 16 6 2.0407 -0.7227 1.2486 17 1 1.6973 -1.7571 1.2355 18 7 1.5258 -0.0526 2.4453 19 6 1.3977 -0.7378 3.5989 20 8 1.7084 -1.9091 3.6460 21 6 0.8686 -0.0483 4.8299 22 6 0.8231 -1.0429 5.9917 23 6 0.2852 -0.3431 7.2414 24 6 1.2028 0.8256 7.6063 25 9 0.7113 1.4651 8.7493 26 9 2.4920 0.3450 7.8593 27 6 1.2482 1.8202 6.4445 28 6 1.7863 1.1204 5.1942 29 1 -0.3634 0.5129 0.8904 30 1 -0.3633 0.5149 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6064 -1.7218 -1.2978 33 1 1.7645 -0.1582 -2.1388 34 1 2.4021 -1.0745 -4.7098 35 1 3.8386 -2.4809 0.0878 36 1 5.1903 -1.3253 -0.0136 37 1 3.9154 0.3401 1.2547 38 1 3.9333 -1.1884 2.1680 39 1 1.2770 0.8842 2.4074 40 1 -0.1361 0.3262 4.6331 41 1 1.8275 -1.4178 6.1885 42 1 0.1691 -1.8753 5.7319 43 1 0.2533 -1.0516 8.0692 44 1 -0.7192 0.0313 7.0442 45 1 0.2437 2.1947 6.2473 46 1 1.9022 2.6526 6.7042 47 1 2.7908 0.7459 5.3910 48 1 1.8183 1.8289 4.3665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942981257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:12 Heat of formation + Delta-G solvation = -163.595490 kcal Electronic energy + Delta-G solvation = -29723.502933 eV Core-core repulsion = 25447.440693 eV Total energy + Delta-G solvation = -4276.062240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.93497 -47.93979 -41.34073 -39.49398 -37.88225 -36.13300 -34.00549 -33.49355 -32.11679 -31.69613 -30.60803 -27.54269 -26.91991 -24.81842 -24.14222 -23.46632 -22.50212 -21.60360 -21.08979 -20.52934 -18.86715 -18.38278 -17.90177 -17.85385 -17.27392 -17.13254 -16.69652 -16.04979 -15.66707 -15.52621 -15.24111 -15.10047 -14.87740 -14.65565 -14.56057 -14.35209 -14.25066 -14.17954 -13.95255 -13.53210 -13.37465 -13.26618 -13.07218 -12.91423 -12.85616 -12.74813 -12.60040 -12.53974 -12.44535 -12.18784 -12.04173 -11.83692 -11.72336 -11.70362 -11.53710 -11.24162 -11.09789 -10.67436 -10.55336 -9.93723 -8.70696 -7.88070 -5.34234 1.48613 1.49978 1.57344 1.70012 2.22227 2.51529 2.83956 3.14729 3.26636 3.33588 3.44208 3.63677 3.76971 3.79513 3.88104 3.97990 4.07825 4.09862 4.22860 4.32824 4.35480 4.35962 4.58067 4.63226 4.67151 4.72744 4.75706 4.83240 4.86924 4.90254 4.95143 4.98557 5.00285 5.02043 5.09857 5.17256 5.19985 5.31028 5.31281 5.36814 5.51245 5.61013 5.65913 5.74573 6.38514 6.67227 7.14174 7.36034 7.83520 8.36558 9.18530 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.002484 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.569366 B =11269.067193 C =11413.914105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.266 4.266 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.274 1.274 14 C 0.144 3.856 15 C -0.124 4.124 16 C 0.169 3.831 17 H 0.053 0.947 18 N -0.706 5.706 19 C 0.513 3.487 20 O -0.587 6.587 21 C -0.101 4.101 22 C -0.098 4.098 23 C -0.150 4.150 24 C 0.274 3.726 25 F -0.212 7.212 26 F -0.218 7.218 27 C -0.148 4.148 28 C -0.108 4.108 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.040 0.960 32 H -0.011 1.011 33 H 0.062 0.938 34 H 0.251 0.749 35 H 0.003 0.997 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.414 0.586 40 H 0.138 0.862 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 8.997 21.788 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.094 0.906 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.396 4.396 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.200 1.200 14 C 0.017 3.983 15 C -0.165 4.165 16 C 0.064 3.936 17 H 0.071 0.929 18 N -0.357 5.357 19 C 0.301 3.699 20 O -0.466 6.466 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.188 4.188 24 C 0.238 3.762 25 F -0.193 7.193 26 F -0.199 7.199 27 C -0.186 4.186 28 C -0.146 4.146 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.007 0.993 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.156 0.844 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.958 8.151 21.695 24.847 hybrid contribution 0.748 0.106 -0.933 1.201 sum -8.210 8.257 20.762 23.804 Atomic orbital electron populations 1.21678 0.93436 1.01424 1.02430 1.21883 0.96610 0.99891 0.94374 0.90649 1.20615 0.82384 0.95543 0.95306 1.44362 1.02353 1.69835 1.16724 1.19477 0.98459 1.35026 0.86643 0.91589 1.25818 0.99446 1.00130 0.98975 1.70184 1.27241 1.41634 1.18978 0.85329 0.77867 0.79147 0.78012 1.20418 1.22029 1.20007 1.20962 0.96773 0.93781 0.86743 1.22171 0.95778 1.01099 0.97405 1.20591 0.92870 0.96048 0.84074 0.92873 1.46026 1.65396 1.15055 1.09249 1.21165 0.76951 0.86593 0.85175 1.90705 1.51730 1.18730 1.85480 1.21461 1.02922 0.96530 0.91286 1.21248 1.02246 0.97765 0.92320 1.22532 1.00481 0.96252 0.99502 1.21601 0.78089 0.93196 0.83309 1.92988 1.87852 1.83640 1.54824 1.92975 1.42180 1.89635 1.95115 1.22534 1.06798 0.97338 0.91944 1.21517 0.98438 0.96269 0.98379 0.90089 0.92641 0.94047 0.99295 0.91991 0.93999 0.97897 0.92612 0.91363 0.92406 0.74896 0.84398 0.92785 0.90098 0.89227 0.85803 0.85486 0.88540 0.92337 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.03 71.98 0.65 -2.95 16 2 C -0.11 -3.62 2.46 -10.71 -0.03 -3.64 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.19 8.82 4.59 86.36 0.40 9.22 16 5 N -0.61 -30.67 2.99 -699.10 -2.09 -32.76 16 6 C -0.27 -14.56 9.58 84.03 0.81 -13.75 16 7 H 0.07 3.52 7.88 -2.92 -0.02 3.50 16 8 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 9 N -0.93 -54.81 11.20 21.65 0.24 -54.57 16 10 Si 0.97 44.16 29.59 68.60 2.03 46.19 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 C 0.14 6.25 6.52 86.36 0.56 6.82 16 15 C -0.12 -4.36 5.65 30.67 0.17 -4.19 16 16 C 0.17 5.46 1.88 45.02 0.08 5.54 16 17 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 18 N -0.71 -15.92 4.26 -442.42 -1.88 -17.81 16 19 C 0.51 12.25 7.12 87.65 0.62 12.87 16 20 O -0.59 -20.13 15.64 -3.02 -0.05 -20.17 16 21 C -0.10 -1.41 2.52 -11.54 -0.03 -1.44 16 22 C -0.10 -1.58 4.37 30.59 0.13 -1.45 16 23 C -0.15 -1.73 5.45 30.59 0.17 -1.56 16 24 C 0.27 3.96 2.10 30.60 0.06 4.03 16 25 F -0.21 -3.60 17.06 44.97 0.77 -2.83 16 26 F -0.22 -4.56 16.03 44.97 0.72 -3.84 16 27 C -0.15 -1.34 5.46 30.61 0.17 -1.18 16 28 C -0.11 -1.24 4.98 30.61 0.15 -1.09 16 29 H 0.08 1.60 7.36 -2.39 -0.02 1.58 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.06 3.27 6.06 -2.38 -0.01 3.26 16 34 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 6.35 7.72 -92.70 -0.72 5.64 16 40 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.05 1.18 7.76 -2.39 -0.02 1.16 16 42 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.97 7.80 -2.39 -0.02 0.95 16 48 H 0.11 0.80 7.57 -2.39 -0.02 0.78 16 Total: -1.00 -71.87 376.49 4.31 -67.55 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.23 Total: 13.26 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 4.34 Total: 4.98 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.73 Total: -105.14 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 1.49 Total: -6.68 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.87 4.31 -67.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942981257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.043 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds