Wall clock time and date at job start Tue Mar 31 2020 17:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.49631 * 2 1 4 4 C 1.53196 * 109.52083 * 239.91940 * 2 1 3 5 5 N 1.46931 * 108.77372 * 185.39649 * 4 2 1 6 6 C 1.36932 * 120.62704 * 233.58675 * 5 4 2 7 7 H 1.08005 * 120.00169 * 151.85280 * 6 5 4 8 8 C 1.38816 * 120.00440 * 331.84594 * 6 5 4 9 9 N 1.31618 * 119.99589 * 343.07484 * 8 6 5 10 10 Si 1.86799 * 120.00269 * 163.07471 * 8 6 5 11 11 H 1.48503 * 109.46743 * 90.00126 * 10 8 6 12 12 H 1.48495 * 109.47199 * 210.00083 * 10 8 6 13 13 H 1.48499 * 109.47123 * 330.00254 * 10 8 6 14 14 C 1.46920 * 118.73670 * 53.60888 * 5 4 2 15 15 C 1.53192 * 108.77972 * 306.38713 * 14 5 4 16 16 C 1.53036 * 109.49829 * 120.06686 * 2 1 3 17 17 H 1.08999 * 109.45759 * 301.34736 * 16 2 1 18 18 N 1.46493 * 109.46488 * 61.32642 * 16 2 1 19 19 C 1.34778 * 120.00501 * 204.72343 * 18 16 2 20 20 O 1.21288 * 119.99752 * 0.27801 * 19 18 16 21 21 C 1.50695 * 120.00349 * 180.27325 * 19 18 16 22 22 C 1.53001 * 109.47207 * 300.00292 * 21 19 18 23 23 C 1.52996 * 109.46909 * 180.02562 * 22 21 19 24 24 C 1.52996 * 109.47535 * 59.99818 * 23 22 21 25 25 F 1.39902 * 109.47482 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.47001 * 60.00105 * 24 23 22 27 27 C 1.53001 * 109.47171 * 300.00022 * 24 23 22 28 28 C 1.53000 * 109.47081 * 59.99919 * 27 24 23 29 29 H 1.09003 * 109.47186 * 299.93430 * 1 2 3 30 30 H 1.08998 * 109.47736 * 59.93327 * 1 2 3 31 31 H 1.09003 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.58808 * 305.18300 * 4 2 1 33 33 H 1.08997 * 109.58712 * 65.46434 * 4 2 1 34 34 H 0.97005 * 119.99682 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.59185 * 66.17907 * 14 5 4 36 36 H 1.09008 * 109.58345 * 186.46269 * 14 5 4 37 37 H 1.09002 * 109.49889 * 294.69197 * 15 14 5 38 38 H 1.08994 * 109.50289 * 174.58938 * 15 14 5 39 39 H 0.97002 * 119.99877 * 24.99957 * 18 16 2 40 40 H 1.09000 * 109.47336 * 60.00342 * 21 19 18 41 41 H 1.08997 * 109.47027 * 299.99731 * 22 21 19 42 42 H 1.08996 * 109.46744 * 59.99714 * 22 21 19 43 43 H 1.09000 * 109.47398 * 299.99905 * 23 22 21 44 44 H 1.09003 * 109.47203 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47027 * 299.99971 * 27 24 23 46 46 H 1.09004 * 109.46909 * 179.97438 * 27 24 23 47 47 H 1.08998 * 109.47279 * 180.02562 * 28 27 24 48 48 H 1.08997 * 109.47148 * 60.00126 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5052 -0.8284 -1.1691 6 6 4.2941 -0.3783 -2.1938 7 1 5.2966 -0.0312 -1.9912 8 6 3.8056 -0.3682 -3.4931 9 7 2.7426 -1.0803 -3.8019 10 14 4.6566 0.6560 -4.8031 11 1 5.7035 -0.1611 -5.4676 12 1 3.6597 1.0980 -5.8111 13 1 5.2831 1.8453 -4.1721 14 6 4.1058 -1.4255 0.0314 15 6 3.5709 -0.6940 1.2665 16 6 2.0408 -0.7228 1.2485 17 1 1.6580 -0.2240 2.1389 18 7 1.5790 -2.1129 1.2310 19 6 1.4562 -2.7969 2.3859 20 8 1.7233 -2.2598 3.4400 21 6 0.9871 -4.2288 2.3673 22 6 -0.4090 -4.3001 1.7453 23 6 -0.8855 -5.7539 1.7271 24 6 -0.9368 -6.2918 3.1585 25 9 -1.3731 -7.6209 3.1419 26 9 -1.8245 -5.5195 3.9153 27 6 0.4593 -6.2205 3.7805 28 6 0.9358 -4.7667 3.7988 29 1 -0.3634 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6063 -1.7217 -1.2979 33 1 1.7621 -0.1594 -2.1390 34 1 2.4010 -1.0730 -4.7098 35 1 3.8386 -2.4807 0.0875 36 1 5.1903 -1.3251 -0.0140 37 1 3.9154 0.3401 1.2545 38 1 3.9335 -1.1883 2.1677 39 1 1.3654 -2.5424 0.3879 40 1 1.6788 -4.8302 1.7775 41 1 -1.1007 -3.6988 2.3352 42 1 -0.3724 -3.9165 0.7258 43 1 -0.1938 -6.3556 1.1375 44 1 -1.8802 -5.8047 1.2844 45 1 1.1509 -6.8221 3.1909 46 1 0.4226 -6.6033 4.8005 47 1 1.9305 -4.7159 4.2415 48 1 0.2442 -4.1650 4.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942981259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:18 Heat of formation + Delta-G solvation = -159.099438 kcal Electronic energy + Delta-G solvation = -30314.367609 eV Core-core repulsion = 26038.500333 eV Total energy + Delta-G solvation = -4275.867276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.94043 -47.94054 -41.43069 -39.52551 -37.83587 -35.89729 -33.75851 -33.50480 -32.11789 -31.71301 -30.63273 -27.50136 -27.01353 -24.82003 -24.13202 -23.63638 -22.57683 -21.81449 -20.81095 -20.06413 -18.76771 -18.42838 -18.12255 -17.80845 -17.20342 -16.86265 -16.60869 -16.09688 -15.71607 -15.49521 -15.26007 -15.12539 -14.88969 -14.69892 -14.52538 -14.41534 -14.27078 -14.14225 -13.94726 -13.58498 -13.37563 -13.18072 -13.07114 -12.90789 -12.77159 -12.73412 -12.60659 -12.51526 -12.45400 -12.21134 -12.15587 -11.78105 -11.71071 -11.66959 -11.43128 -11.13516 -11.08011 -10.67466 -10.52040 -9.90480 -8.62777 -7.85802 -5.29308 1.47392 1.50470 1.58581 1.71470 2.28937 2.52958 2.82348 3.13376 3.29317 3.33339 3.42938 3.69333 3.78227 3.83320 3.87657 4.00694 4.08583 4.09732 4.21851 4.31468 4.35308 4.36939 4.60752 4.63329 4.67642 4.70591 4.77225 4.82028 4.87853 4.88346 4.97819 4.98410 5.01037 5.06053 5.12366 5.16527 5.20044 5.29608 5.32917 5.37643 5.54641 5.66306 5.69003 5.79849 6.42133 6.66127 7.18671 7.32843 7.88783 8.39681 9.19653 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.003012 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.950120 B = 9295.158773 C = 9712.897368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.066 0.934 4 C 0.190 3.810 5 N -0.608 5.608 6 C -0.265 4.265 7 H 0.059 0.941 8 C -0.041 4.041 9 N -0.926 5.926 10 Si 0.959 3.041 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.276 1.276 14 C 0.151 3.849 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.073 0.927 18 N -0.706 5.706 19 C 0.518 3.482 20 O -0.582 6.582 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.151 4.151 24 C 0.278 3.722 25 F -0.211 7.211 26 F -0.214 7.214 27 C -0.151 4.151 28 C -0.093 4.093 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.012 0.988 33 H 0.054 0.946 34 H 0.250 0.750 35 H 0.020 0.980 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.406 0.594 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -9.300 11.943 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 H 0.084 0.916 4 C 0.064 3.936 5 N -0.331 5.331 6 C -0.395 4.395 7 H 0.077 0.923 8 C -0.237 4.237 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.201 1.201 14 C 0.025 3.975 15 C -0.175 4.175 16 C 0.062 3.938 17 H 0.091 0.909 18 N -0.357 5.357 19 C 0.305 3.695 20 O -0.462 6.462 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.189 4.189 24 C 0.242 3.758 25 F -0.193 7.193 26 F -0.195 7.195 27 C -0.189 4.189 28 C -0.131 4.131 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.243 0.757 40 H 0.141 0.859 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.136 0.864 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.516 -8.936 12.537 17.133 hybrid contribution 0.277 0.403 -1.184 1.281 sum -7.239 -8.533 11.353 15.941 Atomic orbital electron populations 1.21653 0.93592 1.02122 1.01566 1.21933 0.96537 0.99608 0.95611 0.91568 1.20587 0.82297 0.96112 0.94597 1.44265 1.02322 1.70038 1.16471 1.19416 0.98221 1.35118 0.86751 0.92307 1.25622 0.99373 1.00093 0.98590 1.70122 1.26809 1.41420 1.18802 0.85420 0.77600 0.79056 0.79196 1.21349 1.21778 1.20105 1.20890 0.96089 0.94348 0.86177 1.22241 0.96032 1.01087 0.98097 1.20685 0.93336 0.82011 0.97764 0.90872 1.46129 1.66707 1.13497 1.09368 1.20954 0.76417 0.89005 0.83089 1.90659 1.52330 1.71314 1.31899 1.21461 0.99391 0.92255 0.99669 1.21470 0.94222 0.96087 1.02690 1.22519 1.05919 0.97553 0.92906 1.21490 0.87829 0.72946 0.93493 1.92989 1.91457 1.37394 1.97412 1.92972 1.72004 1.75683 1.78864 1.22537 0.93235 0.99005 1.04105 1.21222 1.03022 0.93932 0.94884 0.92114 0.92827 0.92153 0.97017 0.92728 0.94060 0.96171 0.93681 0.91929 0.91999 0.75702 0.85918 0.91392 0.88779 0.86361 0.88445 0.86421 0.88689 0.89951 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.06 71.98 0.65 -2.99 16 2 C -0.12 -3.92 2.67 -10.72 -0.03 -3.95 16 3 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.19 8.07 4.29 86.36 0.37 8.44 16 5 N -0.61 -28.36 2.99 -699.09 -2.09 -30.45 16 6 C -0.26 -13.96 9.58 84.04 0.81 -13.15 16 7 H 0.06 3.10 7.89 -2.91 -0.02 3.07 16 8 C -0.04 -2.16 4.92 84.86 0.42 -1.74 16 9 N -0.93 -51.04 11.19 21.65 0.24 -50.80 16 10 Si 0.96 43.25 29.59 68.60 2.03 45.28 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.15 5.95 6.26 86.36 0.54 6.49 16 15 C -0.13 -4.59 5.77 30.68 0.18 -4.41 16 16 C 0.17 5.27 2.21 45.02 0.10 5.37 16 17 H 0.07 2.36 7.58 -2.39 -0.02 2.35 16 18 N -0.71 -19.43 3.49 -442.41 -1.54 -20.97 16 19 C 0.52 13.81 7.12 87.66 0.62 14.44 16 20 O -0.58 -19.64 15.65 -3.05 -0.05 -19.69 16 21 C -0.11 -1.99 2.53 -11.54 -0.03 -2.01 16 22 C -0.11 -1.73 4.98 30.59 0.15 -1.58 16 23 C -0.15 -2.08 5.45 30.59 0.17 -1.91 16 24 C 0.28 4.79 2.10 30.59 0.06 4.85 16 25 F -0.21 -4.15 17.06 44.97 0.77 -3.38 16 26 F -0.21 -4.74 16.02 44.97 0.72 -4.02 16 27 C -0.15 -2.15 5.45 30.59 0.17 -1.98 16 28 C -0.09 -1.70 4.37 30.60 0.13 -1.57 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.54 7.54 -2.39 -0.02 1.52 16 32 H 0.01 0.51 6.64 -2.39 -0.02 0.49 16 33 H 0.05 2.73 6.07 -2.39 -0.01 2.71 16 34 H 0.25 13.45 8.31 -92.70 -0.77 12.68 16 35 H 0.02 0.79 7.74 -2.39 -0.02 0.77 16 36 H 0.04 1.81 7.93 -2.38 -0.02 1.79 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.41 10.84 6.15 -92.71 -0.57 10.27 16 40 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 42 H 0.09 1.40 7.56 -2.39 -0.02 1.38 16 43 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 48 H 0.06 1.37 7.76 -2.39 -0.02 1.36 16 Total: -1.00 -63.15 372.54 4.77 -58.38 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.38 Total: 21.37 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.31 Total: 4.28 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.39 Total: -102.22 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 1.49 Total: -7.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -63.15 4.77 -58.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942981259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.718 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds