Wall clock time and date at job start Tue Mar 31 2020 17:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50028 * 2 1 4 4 C 1.53188 * 109.52648 * 239.91799 * 2 1 3 5 5 N 1.46933 * 108.77768 * 185.39985 * 4 2 1 6 6 C 1.36935 * 120.62950 * 233.58819 * 5 4 2 7 7 H 1.07999 * 120.00242 * 152.60313 * 6 5 4 8 8 C 1.38818 * 119.99573 * 332.60055 * 6 5 4 9 9 N 1.31622 * 119.99670 * 159.33096 * 8 6 5 10 10 Si 1.86797 * 120.00173 * 339.32458 * 8 6 5 11 11 H 1.48506 * 109.46655 * 92.94592 * 10 8 6 12 12 H 1.48501 * 109.47074 * 212.94326 * 10 8 6 13 13 H 1.48503 * 109.47333 * 332.94711 * 10 8 6 14 14 C 1.46922 * 118.73657 * 53.60443 * 5 4 2 15 15 C 1.53166 * 108.77353 * 306.39271 * 14 5 4 16 16 C 1.53038 * 109.32482 * 54.64247 * 15 14 5 17 17 H 1.09005 * 109.45992 * 58.64838 * 16 15 14 18 18 N 1.46499 * 109.45848 * 178.61666 * 16 15 14 19 19 C 1.34776 * 120.00115 * 275.03072 * 18 16 15 20 20 O 1.21477 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.48458 * 120.00294 * 180.02562 * 19 18 16 22 22 C 1.39534 * 120.55433 * 179.97438 * 21 19 18 23 23 C 1.38758 * 118.26329 * 179.97438 * 22 21 19 24 24 N 1.32200 * 119.15001 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.03712 * 359.97438 * 24 23 22 26 26 C 1.50702 * 119.04162 * 180.02562 * 25 24 23 27 27 C 1.52993 * 117.49817 * 8.74934 * 26 25 24 28 28 C 1.52999 * 117.49856 * 300.09024 * 26 25 24 29 29 N 1.31583 * 121.91514 * 359.72601 * 25 24 23 30 30 H 1.09002 * 109.46794 * 299.93598 * 1 2 3 31 31 H 1.08999 * 109.47147 * 59.93470 * 1 2 3 32 32 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58108 * 305.18067 * 4 2 1 34 34 H 1.08993 * 109.58458 * 65.60808 * 4 2 1 35 35 H 0.96996 * 119.99882 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58935 * 66.18587 * 14 5 4 37 37 H 1.09007 * 109.58315 * 186.60925 * 14 5 4 38 38 H 1.09011 * 109.49840 * 294.68934 * 15 14 5 39 39 H 1.08994 * 109.48064 * 174.60073 * 15 14 5 40 40 H 0.97001 * 120.00371 * 95.03046 * 18 16 15 41 41 H 1.08004 * 120.86515 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.42135 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.55093 * 154.42265 * 26 25 24 44 44 H 1.09003 * 117.50188 * 359.97438 * 27 26 25 45 45 H 1.08998 * 117.49828 * 145.02142 * 27 26 25 46 46 H 1.09006 * 117.50029 * 214.97964 * 28 26 25 47 47 H 1.09007 * 117.50075 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8284 -1.1689 6 6 4.2944 -0.3783 -2.1935 7 1 5.3011 -0.0426 -1.9926 8 6 3.8003 -0.3535 -3.4906 9 7 4.3584 0.4259 -4.3926 10 14 2.3437 -1.4264 -3.9558 11 1 1.0869 -0.6520 -3.7938 12 1 2.4795 -1.8595 -5.3698 13 1 2.3066 -2.6205 -3.0737 14 6 4.1059 -1.4255 0.0317 15 6 3.5708 -0.6939 1.2664 16 6 2.0408 -0.7226 1.2486 17 1 1.6972 -1.7570 1.2357 18 7 1.5262 -0.0524 2.4453 19 6 1.3976 -0.7376 3.5988 20 8 1.7080 -1.9111 3.6460 21 6 0.8755 -0.0586 4.8114 22 6 0.7372 -0.7570 6.0114 23 6 0.2450 -0.0755 7.1153 24 7 -0.0741 1.2016 6.9940 25 6 0.0690 1.8320 5.8445 26 6 -0.3082 3.2884 5.7569 27 6 -0.6457 4.0105 7.0628 28 6 -1.7582 3.6627 6.0706 29 7 0.5371 1.2279 4.7733 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6064 -1.7217 -1.2976 34 1 1.7645 -0.1581 -2.1387 35 1 4.0134 0.4429 -5.2989 36 1 3.8387 -2.4807 0.0878 37 1 5.1903 -1.3228 -0.0125 38 1 3.9154 0.3402 1.2544 39 1 3.9337 -1.1883 2.1675 40 1 1.2779 0.8845 2.4076 41 1 1.0062 -1.8008 6.0791 42 1 0.1242 -0.5820 8.0615 43 1 0.2031 3.8608 4.9829 44 1 -0.5953 3.4321 7.9853 45 1 -0.3568 5.0580 7.1479 46 1 -2.2007 4.4816 5.5033 47 1 -2.4394 2.8554 6.3399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943253209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:26 Heat of formation + Delta-G solvation = 63.598717 kcal Electronic energy + Delta-G solvation = -28239.311834 eV Core-core repulsion = 24423.790660 eV Total energy + Delta-G solvation = -3815.521173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64985 -39.86664 -38.02466 -37.30552 -34.85067 -34.20081 -32.44499 -32.15901 -31.95850 -30.12711 -26.57681 -26.07846 -25.40073 -24.71908 -22.92108 -22.72040 -21.93212 -20.88295 -20.46108 -19.71766 -18.30342 -18.03570 -16.83749 -16.23209 -16.05194 -15.80925 -15.68409 -15.14228 -14.83557 -14.62746 -14.39169 -14.31945 -13.94285 -13.66975 -13.29273 -13.25533 -12.64860 -12.60357 -12.40151 -11.96177 -11.90961 -11.66601 -11.47541 -11.39128 -11.31196 -11.14298 -10.95123 -10.86384 -10.68828 -10.54054 -10.49622 -10.31958 -10.01710 -9.81122 -9.70154 -9.59434 -9.47500 -8.89178 -8.64178 -7.00873 -5.96405 -3.32396 0.17363 0.51791 2.54393 2.85703 3.24638 3.30161 3.30326 3.48042 3.51101 3.57985 3.80001 4.28365 4.41587 4.48037 4.51510 4.59786 4.62191 4.77123 4.89364 4.97448 5.11705 5.25699 5.28118 5.29645 5.32658 5.44651 5.45993 5.66197 5.69101 5.80443 5.86381 5.86968 5.89088 6.00894 6.08939 6.11006 6.25525 6.32495 6.38505 6.44979 6.59379 6.60811 6.66830 6.69444 6.90397 7.42419 7.64443 7.94238 8.06126 8.31600 8.92068 9.70250 10.07593 11.19536 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002753 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.057881 B =10167.664785 C =10777.431062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.154 3.846 17 H 0.086 0.914 18 N -0.694 5.694 19 C 0.565 3.435 20 O -0.526 6.526 21 C 0.142 3.858 22 C -0.180 4.180 23 C 0.153 3.847 24 N -0.506 5.506 25 C 0.349 3.651 26 C -0.104 4.104 27 C -0.152 4.152 28 C -0.154 4.154 29 N -0.490 5.490 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.263 0.737 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.409 0.591 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 3.676 23.858 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 H 0.098 0.902 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.550 5.550 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.025 3.975 15 C -0.183 4.183 16 C 0.051 3.949 17 H 0.104 0.896 18 N -0.343 5.343 19 C 0.348 3.652 20 O -0.401 6.401 21 C -0.007 4.007 22 C -0.202 4.202 23 C -0.014 4.014 24 N -0.221 5.221 25 C 0.082 3.918 26 C -0.124 4.124 27 C -0.190 4.190 28 C -0.193 4.193 29 N -0.206 5.206 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.920 3.797 23.561 26.676 hybrid contribution -0.676 -1.060 -0.350 1.305 sum -12.596 2.736 23.211 26.550 Atomic orbital electron populations 1.21805 0.95518 1.01659 1.01409 1.21989 0.94931 1.01151 0.95512 0.90180 1.21384 0.84905 0.97247 0.95527 1.44409 1.00626 1.70058 1.17832 1.18927 0.98596 1.36139 0.85127 0.89603 1.25284 0.97989 0.98611 0.95648 1.69837 1.43268 1.37812 1.04133 0.86994 0.82593 0.82556 0.76856 1.21533 1.23111 1.19454 1.20895 0.97410 0.94152 0.85081 1.22409 0.94205 1.02036 0.99626 1.21158 0.94275 0.97188 0.82311 0.89583 1.46137 1.63470 1.15153 1.09578 1.17776 0.78836 0.86042 0.82532 1.90803 1.50068 1.15120 1.84120 1.21801 0.94158 0.89867 0.94844 1.22988 1.00064 1.03765 0.93430 1.23333 0.89946 0.89362 0.98745 1.68045 1.16958 1.10183 1.26879 1.22101 0.90409 0.95645 0.83608 1.20670 1.00930 0.88222 1.02622 1.23047 1.01537 1.00760 0.93662 1.23010 0.90011 1.03430 1.02807 1.68069 1.11413 1.09383 1.31782 0.93039 0.92340 0.92924 0.95426 0.90415 0.92749 0.95610 0.91460 0.91619 0.92149 0.75516 0.82084 0.80541 0.84970 0.87209 0.88004 0.87710 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.03 37.16 0.34 -1.78 16 2 C -0.11 -1.96 2.46 -90.50 -0.22 -2.18 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.14 2.90 3.49 -3.71 -0.01 2.88 16 5 N -0.61 -14.24 2.77 -172.33 -0.48 -14.72 16 6 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 7 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -27.65 13.97 55.49 0.78 -26.87 16 10 Si 0.88 22.20 24.35 -169.99 -4.14 18.06 16 11 H -0.29 -6.94 6.62 56.52 0.37 -6.56 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 13 H -0.27 -6.72 6.64 56.52 0.38 -6.34 16 14 C 0.15 3.01 6.51 -3.73 -0.02 2.99 16 15 C -0.14 -2.44 5.65 -26.63 -0.15 -2.59 16 16 C 0.15 2.49 1.88 -67.89 -0.13 2.36 16 17 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.69 -9.70 4.36 -54.51 -0.24 -9.94 16 19 C 0.57 8.12 7.79 -12.05 -0.09 8.03 16 20 O -0.53 -8.85 16.09 5.39 0.09 -8.76 16 21 C 0.14 1.74 6.79 -82.63 -0.56 1.18 16 22 C -0.18 -1.76 9.72 -38.91 -0.38 -2.14 16 23 C 0.15 1.25 11.31 -17.20 -0.19 1.05 16 24 N -0.51 -4.97 9.33 -10.74 -0.10 -5.07 16 25 C 0.35 3.73 7.31 -157.30 -1.15 2.58 16 26 C -0.10 -0.87 6.23 -91.77 -0.57 -1.44 16 27 C -0.15 -1.00 10.01 -26.70 -0.27 -1.27 16 28 C -0.15 -1.04 10.24 -26.70 -0.27 -1.31 16 29 N -0.49 -5.83 9.60 -7.32 -0.07 -5.90 16 30 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.59 7.08 -51.93 -0.37 0.23 16 34 H 0.08 1.82 4.50 -51.93 -0.23 1.58 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 38 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 5.21 7.69 -40.82 -0.31 4.90 16 41 H 0.16 1.39 7.74 -52.48 -0.41 0.98 16 42 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.11 0.79 7.54 -51.93 -0.39 0.40 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -32.36 377.75 -9.57 -41.92 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.16 Total: 3.98 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -3.93 Total: 1.61 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.11 Total: -62.50 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.36 -9.57 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.523 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds