Wall clock time and date at job start Tue Mar 31 2020 17:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50028 * 2 1 4 4 C 1.53188 * 109.52648 * 239.91799 * 2 1 3 5 5 N 1.46933 * 108.77768 * 185.39985 * 4 2 1 6 6 C 1.36935 * 120.62950 * 233.58819 * 5 4 2 7 7 H 1.07999 * 120.00242 * 152.60313 * 6 5 4 8 8 C 1.38818 * 119.99573 * 332.60055 * 6 5 4 9 9 N 1.31622 * 119.99670 * 159.33096 * 8 6 5 10 10 Si 1.86797 * 120.00173 * 339.32458 * 8 6 5 11 11 H 1.48506 * 109.46655 * 92.94592 * 10 8 6 12 12 H 1.48501 * 109.47074 * 212.94326 * 10 8 6 13 13 H 1.48503 * 109.47333 * 332.94711 * 10 8 6 14 14 C 1.46922 * 118.73657 * 53.60443 * 5 4 2 15 15 C 1.53166 * 108.77353 * 306.39271 * 14 5 4 16 16 C 1.53038 * 109.32482 * 54.64247 * 15 14 5 17 17 H 1.09005 * 109.45992 * 58.64838 * 16 15 14 18 18 N 1.46499 * 109.45848 * 178.61666 * 16 15 14 19 19 C 1.34776 * 120.00115 * 275.03072 * 18 16 15 20 20 O 1.21477 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.48458 * 120.00294 * 180.02562 * 19 18 16 22 22 C 1.39534 * 120.55433 * 179.97438 * 21 19 18 23 23 C 1.38758 * 118.26329 * 179.97438 * 22 21 19 24 24 N 1.32200 * 119.15001 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.03712 * 359.97438 * 24 23 22 26 26 C 1.50702 * 119.04162 * 180.02562 * 25 24 23 27 27 C 1.52993 * 117.49817 * 8.74934 * 26 25 24 28 28 C 1.52999 * 117.49856 * 300.09024 * 26 25 24 29 29 N 1.31583 * 121.91514 * 359.72601 * 25 24 23 30 30 H 1.09002 * 109.46794 * 299.93598 * 1 2 3 31 31 H 1.08999 * 109.47147 * 59.93470 * 1 2 3 32 32 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58108 * 305.18067 * 4 2 1 34 34 H 1.08993 * 109.58458 * 65.60808 * 4 2 1 35 35 H 0.96996 * 119.99882 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58935 * 66.18587 * 14 5 4 37 37 H 1.09007 * 109.58315 * 186.60925 * 14 5 4 38 38 H 1.09011 * 109.49840 * 294.68934 * 15 14 5 39 39 H 1.08994 * 109.48064 * 174.60073 * 15 14 5 40 40 H 0.97001 * 120.00371 * 95.03046 * 18 16 15 41 41 H 1.08004 * 120.86515 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.42135 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.55093 * 154.42265 * 26 25 24 44 44 H 1.09003 * 117.50188 * 359.97438 * 27 26 25 45 45 H 1.08998 * 117.49828 * 145.02142 * 27 26 25 46 46 H 1.09006 * 117.50029 * 214.97964 * 28 26 25 47 47 H 1.09007 * 117.50075 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8284 -1.1689 6 6 4.2944 -0.3783 -2.1935 7 1 5.3011 -0.0426 -1.9926 8 6 3.8003 -0.3535 -3.4906 9 7 4.3584 0.4259 -4.3926 10 14 2.3437 -1.4264 -3.9558 11 1 1.0869 -0.6520 -3.7938 12 1 2.4795 -1.8595 -5.3698 13 1 2.3066 -2.6205 -3.0737 14 6 4.1059 -1.4255 0.0317 15 6 3.5708 -0.6939 1.2664 16 6 2.0408 -0.7226 1.2486 17 1 1.6972 -1.7570 1.2357 18 7 1.5262 -0.0524 2.4453 19 6 1.3976 -0.7376 3.5988 20 8 1.7080 -1.9111 3.6460 21 6 0.8755 -0.0586 4.8114 22 6 0.7372 -0.7570 6.0114 23 6 0.2450 -0.0755 7.1153 24 7 -0.0741 1.2016 6.9940 25 6 0.0690 1.8320 5.8445 26 6 -0.3082 3.2884 5.7569 27 6 -0.6457 4.0105 7.0628 28 6 -1.7582 3.6627 6.0706 29 7 0.5371 1.2279 4.7733 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6064 -1.7217 -1.2976 34 1 1.7645 -0.1581 -2.1387 35 1 4.0134 0.4429 -5.2989 36 1 3.8387 -2.4807 0.0878 37 1 5.1903 -1.3228 -0.0125 38 1 3.9154 0.3402 1.2544 39 1 3.9337 -1.1883 2.1675 40 1 1.2779 0.8845 2.4076 41 1 1.0062 -1.8008 6.0791 42 1 0.1242 -0.5820 8.0615 43 1 0.2031 3.8608 4.9829 44 1 -0.5953 3.4321 7.9853 45 1 -0.3568 5.0580 7.1479 46 1 -2.2007 4.4816 5.5033 47 1 -2.4394 2.8554 6.3399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943253209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:25 Heat of formation + Delta-G solvation = 42.973472 kcal Electronic energy + Delta-G solvation = -28240.206211 eV Core-core repulsion = 24423.790660 eV Total energy + Delta-G solvation = -3816.415551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.44612 -41.05807 -39.43185 -37.92752 -36.35459 -35.10650 -34.04075 -33.64130 -32.90440 -31.79458 -27.80015 -27.54149 -26.22028 -26.05864 -24.38749 -23.22314 -22.88197 -22.43795 -21.52775 -21.13143 -19.37204 -18.94415 -18.59000 -17.56526 -16.86934 -16.80652 -16.66826 -16.50443 -16.07587 -15.74491 -15.64978 -15.18919 -15.17239 -14.92440 -14.83331 -14.71073 -14.37746 -14.10951 -13.49328 -13.26923 -13.22992 -13.03082 -12.59059 -12.40264 -12.38524 -12.09302 -12.07260 -12.01451 -11.96747 -11.89460 -11.80884 -11.60125 -11.55237 -11.36942 -11.31134 -10.73080 -10.44808 -10.39133 -10.14430 -8.98572 -8.17478 -5.50057 -0.66668 -0.18423 1.28659 1.41445 1.50064 1.56354 1.79962 2.40413 2.50579 2.55259 2.88297 3.02629 3.15162 3.29386 3.45774 3.60192 3.65530 3.88144 3.90885 3.93464 3.99695 4.11418 4.16129 4.22524 4.40256 4.47477 4.49684 4.53646 4.60172 4.66053 4.73611 4.81147 4.83107 4.90787 4.96235 4.97539 5.02787 5.12083 5.15935 5.22064 5.24691 5.32154 5.33244 5.42062 5.71521 5.85225 6.11662 6.33808 6.84361 6.88660 6.96976 7.59440 7.99952 9.02306 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002753 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.057881 B =10167.664785 C =10777.431062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.075 0.925 4 C 0.131 3.869 5 N -0.619 5.619 6 C -0.249 4.249 7 H 0.054 0.946 8 C -0.032 4.032 9 N -0.955 5.955 10 Si 0.941 3.059 11 H -0.269 1.269 12 H -0.311 1.311 13 H -0.263 1.263 14 C 0.148 3.852 15 C -0.130 4.130 16 C 0.164 3.836 17 H 0.078 0.922 18 N -0.687 5.687 19 C 0.568 3.432 20 O -0.553 6.553 21 C 0.120 3.880 22 C -0.178 4.178 23 C 0.164 3.836 24 N -0.511 5.511 25 C 0.338 3.662 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.147 4.147 29 N -0.505 5.505 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.416 0.584 41 H 0.172 0.828 42 H 0.220 0.780 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 3.615 26.597 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.093 0.907 4 C 0.005 3.995 5 N -0.343 5.343 6 C -0.379 4.379 7 H 0.071 0.929 8 C -0.227 4.227 9 N -0.601 5.601 10 Si 0.770 3.230 11 H -0.195 1.195 12 H -0.240 1.240 13 H -0.188 1.188 14 C 0.022 3.978 15 C -0.170 4.170 16 C 0.060 3.940 17 H 0.096 0.904 18 N -0.337 5.337 19 C 0.352 3.648 20 O -0.431 6.431 21 C -0.027 4.027 22 C -0.201 4.201 23 C -0.003 4.003 24 N -0.225 5.225 25 C 0.072 3.928 26 C -0.144 4.144 27 C -0.179 4.179 28 C -0.185 4.185 29 N -0.222 5.222 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.189 0.811 42 H 0.236 0.764 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.294 3.747 26.344 30.205 hybrid contribution 0.114 -1.022 -1.052 1.471 sum -14.180 2.724 25.292 29.124 Atomic orbital electron populations 1.21763 0.93103 1.02329 1.02595 1.21789 0.96833 1.00132 0.93796 0.90670 1.21424 0.83543 0.97639 0.96880 1.44514 1.01477 1.70589 1.17745 1.18858 0.97857 1.34739 0.86407 0.92869 1.25876 1.01308 0.99857 0.95652 1.69960 1.45782 1.39825 1.04540 0.85989 0.80288 0.80908 0.75802 1.19506 1.24012 1.18797 1.21011 0.97197 0.94712 0.84846 1.22236 0.95090 1.01336 0.98378 1.20852 0.93369 0.96828 0.82930 0.90373 1.45925 1.63389 1.15385 1.08972 1.18057 0.78029 0.85703 0.82970 1.90783 1.51294 1.16315 1.84663 1.21559 0.95962 0.90519 0.94699 1.23197 0.99599 1.04262 0.92999 1.24029 0.87880 0.88713 0.99695 1.68153 1.17018 1.10927 1.26426 1.22539 0.90148 0.96578 0.83562 1.20800 1.02286 0.87349 1.03979 1.23102 1.00782 1.01347 0.92642 1.23068 0.89190 1.03521 1.02697 1.68020 1.12235 1.09299 1.32628 0.91027 0.92032 0.92504 0.94921 0.92405 0.92884 0.94827 0.92070 0.92069 0.91185 0.74643 0.81056 0.76393 0.84843 0.87765 0.86287 0.86142 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.03 71.98 0.65 -3.07 16 2 C -0.10 -3.42 2.46 -10.72 -0.03 -3.45 16 3 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.13 5.44 3.49 86.36 0.30 5.74 16 5 N -0.62 -29.15 2.77 -699.14 -1.94 -31.09 16 6 C -0.25 -14.14 10.03 84.04 0.84 -13.30 16 7 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 8 C -0.03 -1.87 5.23 84.86 0.44 -1.43 16 9 N -0.96 -59.94 13.97 21.65 0.30 -59.64 16 10 Si 0.94 46.33 24.35 68.60 1.67 48.00 16 11 H -0.27 -12.28 6.62 99.48 0.66 -11.62 16 12 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 13 H -0.26 -12.54 6.64 99.48 0.66 -11.88 16 14 C 0.15 5.86 6.51 86.35 0.56 6.43 16 15 C -0.13 -4.36 5.65 30.66 0.17 -4.19 16 16 C 0.16 5.10 1.88 45.02 0.08 5.18 16 17 H 0.08 2.61 7.58 -2.38 -0.02 2.60 16 18 N -0.69 -18.18 4.36 -444.69 -1.94 -20.12 16 19 C 0.57 15.56 7.79 86.97 0.68 16.23 16 20 O -0.55 -17.93 16.09 -3.64 -0.06 -17.99 16 21 C 0.12 2.75 6.79 41.99 0.29 3.04 16 22 C -0.18 -3.09 9.72 22.71 0.22 -2.87 16 23 C 0.16 2.18 11.31 84.76 0.96 3.13 16 24 N -0.51 -8.81 9.33 -187.89 -1.75 -10.56 16 25 C 0.34 6.64 7.31 138.79 1.01 7.66 16 26 C -0.12 -1.86 6.23 -11.54 -0.07 -1.93 16 27 C -0.14 -1.54 10.01 30.62 0.31 -1.23 16 28 C -0.15 -1.66 10.24 30.62 0.31 -1.34 16 29 N -0.51 -11.30 9.60 -177.07 -1.70 -13.00 16 30 H 0.07 1.62 7.36 -2.39 -0.02 1.60 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.34 7.08 -2.38 -0.02 1.32 16 34 H 0.06 2.65 4.50 -2.39 -0.01 2.63 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16 38 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.42 9.95 7.69 -92.71 -0.71 9.24 16 41 H 0.17 2.57 7.74 -2.91 -0.02 2.54 16 42 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.10 1.27 7.54 -2.39 -0.02 1.25 16 45 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -71.17 377.75 1.50 -69.67 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.18 Total: 20.12 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.74 Total: 14.61 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -7.02 Total: -134.41 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -71.17 1.50 -69.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.643 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds