Wall clock time and date at job start Tue Mar 31 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50154 * 2 1 4 4 C 1.53189 * 109.49677 * 120.09948 * 2 1 3 5 5 N 1.46924 * 108.77616 * 174.58619 * 4 2 1 6 6 C 1.36936 * 120.63495 * 126.36574 * 5 4 2 7 7 H 1.08006 * 120.00088 * 331.83827 * 6 5 4 8 8 C 1.38817 * 120.00251 * 151.82986 * 6 5 4 9 9 N 1.31618 * 119.99812 * 343.08692 * 8 6 5 10 10 Si 1.86804 * 119.99789 * 163.08139 * 8 6 5 11 11 H 1.48500 * 109.46985 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46787 * 120.00375 * 10 8 6 13 13 H 1.48497 * 109.47041 * 239.99993 * 10 8 6 14 14 C 1.46928 * 118.73563 * 306.38791 * 5 4 2 15 15 C 1.53188 * 108.76461 * 53.61780 * 14 5 4 16 16 C 1.53034 * 109.31582 * 305.34278 * 15 14 5 17 17 H 1.08994 * 109.46657 * 181.40262 * 16 15 14 18 18 N 1.46506 * 109.45677 * 301.37528 * 16 15 14 19 19 C 1.34779 * 119.99847 * 275.02050 * 18 16 15 20 20 O 1.21481 * 119.99697 * 0.02562 * 19 18 16 21 21 C 1.48450 * 119.99870 * 180.02562 * 19 18 16 22 22 C 1.39529 * 120.54939 * 179.72327 * 21 19 18 23 23 C 1.38762 * 118.26423 * 179.76237 * 22 21 19 24 24 N 1.32208 * 119.14795 * 0.51523 * 23 22 21 25 25 C 1.31875 * 121.03024 * 359.74297 * 24 23 22 26 26 C 1.50710 * 119.03726 * 180.02562 * 25 24 23 27 27 C 1.53001 * 117.49823 * 8.60025 * 26 25 24 28 28 C 1.52999 * 117.49621 * 299.97902 * 26 25 24 29 29 N 1.31581 * 121.92355 * 359.97438 * 25 24 23 30 30 H 1.08993 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46815 * 300.06824 * 1 2 3 32 32 H 1.08998 * 109.46630 * 60.06479 * 1 2 3 33 33 H 1.09001 * 109.58401 * 294.36850 * 4 2 1 34 34 H 1.09002 * 109.58945 * 54.79671 * 4 2 1 35 35 H 0.96999 * 119.99615 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58162 * 173.39726 * 14 5 4 37 37 H 1.09000 * 109.58869 * 293.81534 * 14 5 4 38 38 H 1.09004 * 109.48497 * 185.39785 * 15 14 5 39 39 H 1.09003 * 109.51074 * 65.30232 * 15 14 5 40 40 H 0.96999 * 120.00036 * 95.03110 * 18 16 15 41 41 H 1.08004 * 120.86939 * 359.97438 * 22 21 19 42 42 H 1.08005 * 120.42565 * 180.23603 * 23 22 21 43 43 H 1.09002 * 115.54829 * 154.31124 * 26 25 24 44 44 H 1.09001 * 117.49826 * 0.02562 * 27 26 25 45 45 H 1.08996 * 117.49978 * 145.02142 * 27 26 25 46 46 H 1.08997 * 117.49966 * 214.97811 * 28 26 25 47 47 H 1.09000 * 117.50360 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2937 -0.3792 2.1939 7 1 3.9501 0.4261 2.8263 8 6 5.5351 -0.9578 2.4199 9 7 5.8212 -2.1290 1.8918 10 14 6.7996 -0.0740 3.4732 11 1 6.2358 1.2161 3.9454 12 1 7.1471 -0.9198 4.6433 13 1 8.0208 0.1837 2.6686 14 6 4.1052 -1.4268 -0.0312 15 6 3.5708 -0.6945 -1.2660 16 6 2.0408 -0.7227 -1.2486 17 1 1.6582 -0.2240 -2.1390 18 7 1.5786 -2.1129 -1.2312 19 6 1.4499 -2.7947 -2.3867 20 8 1.7176 -2.2567 -3.4425 21 6 0.9810 -4.2031 -2.3691 22 6 0.8381 -4.9179 -3.5589 23 6 0.4012 -6.2329 -3.4870 24 7 0.1274 -6.7568 -2.3043 25 6 0.2683 -6.0511 -1.1992 26 6 -0.0561 -6.6933 0.1251 27 6 -0.3405 -8.1966 0.1304 28 6 -1.4844 -7.2009 0.3329 29 7 0.6848 -4.8031 -1.2189 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3632 0.5128 -0.8906 33 1 1.7638 -0.1585 2.1388 34 1 1.6052 -1.7220 1.2975 35 1 6.6888 -2.5331 2.0495 36 1 5.1896 -1.3247 0.0134 37 1 3.8375 -2.4819 -0.0874 38 1 3.9336 -1.1888 -2.1673 39 1 3.9157 0.3395 -1.2537 40 1 1.3651 -2.5425 -0.3882 41 1 1.0649 -4.4606 -4.5107 42 1 0.2819 -6.8196 -4.3859 43 1 0.4603 -6.2753 0.9893 44 1 -0.2925 -8.7213 -0.8239 45 1 -0.0111 -8.7681 0.9981 46 1 -1.9075 -7.1174 1.3339 47 1 -2.1893 -7.0709 -0.4882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943253210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:29 Heat of formation + Delta-G solvation = 60.276322 kcal Electronic energy + Delta-G solvation = -28855.940965 eV Core-core repulsion = 25040.275722 eV Total energy + Delta-G solvation = -3815.665243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42757 -39.74662 -37.76659 -37.07576 -34.38539 -33.98229 -32.43675 -31.93539 -31.11680 -30.00465 -26.27450 -25.71196 -25.19496 -24.92197 -22.60092 -22.49057 -21.73476 -21.11357 -20.39387 -18.65475 -18.19020 -17.78569 -16.71550 -15.96507 -15.66539 -15.54964 -15.30924 -14.84107 -14.70027 -14.50620 -14.24027 -13.96123 -13.74276 -13.68792 -13.30488 -12.93911 -12.56728 -12.40547 -12.12508 -11.71601 -11.50014 -11.37647 -11.16492 -11.10018 -11.09467 -10.90727 -10.84073 -10.71847 -10.65448 -10.35556 -10.23198 -10.19699 -10.05327 -9.75316 -9.49712 -9.44775 -9.36139 -8.66152 -8.47039 -6.67890 -5.79640 -3.22976 0.40152 0.74562 2.77691 3.12215 3.36451 3.44595 3.46444 3.48089 3.53828 3.80693 4.01724 4.47735 4.52103 4.64363 4.70020 4.81062 4.83765 4.97909 5.14011 5.30925 5.33691 5.35727 5.46297 5.48697 5.50237 5.59517 5.66412 5.85071 5.91114 5.97353 6.01135 6.07965 6.10816 6.15079 6.27609 6.32970 6.44229 6.59034 6.64575 6.66817 6.76360 6.90812 6.93479 7.35855 7.66138 7.68693 7.79027 7.89249 8.31873 8.43400 9.19688 9.83006 10.39406 11.28426 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003593 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.428726 B = 7791.041669 C = 8711.986791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.157 3.843 17 H 0.076 0.924 18 N -0.682 5.682 19 C 0.566 3.434 20 O -0.535 6.535 21 C 0.144 3.856 22 C -0.181 4.181 23 C 0.151 3.849 24 N -0.508 5.508 25 C 0.351 3.649 26 C -0.103 4.103 27 C -0.152 4.152 28 C -0.155 4.155 29 N -0.486 5.486 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.160 0.840 42 H 0.176 0.824 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -7.880 -7.980 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 H 0.102 0.898 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.053 3.947 17 H 0.094 0.906 18 N -0.333 5.333 19 C 0.348 3.652 20 O -0.412 6.412 21 C -0.004 4.004 22 C -0.204 4.204 23 C -0.016 4.016 24 N -0.222 5.222 25 C 0.084 3.916 26 C -0.123 4.123 27 C -0.190 4.190 28 C -0.193 4.193 29 N -0.202 5.202 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.178 0.822 42 H 0.193 0.807 43 H 0.152 0.848 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.102 -7.913 -7.797 17.952 hybrid contribution 0.971 0.577 0.005 1.130 sum -13.131 -7.336 -7.792 16.940 Atomic orbital electron populations 1.21776 0.95713 1.01444 1.01131 1.21957 0.94622 1.00749 0.96611 0.89804 1.20924 0.86129 0.96262 0.94315 1.44058 0.99138 1.71537 1.16566 1.19212 0.98506 1.11911 1.08683 0.91615 1.25043 0.99938 0.95314 0.99191 1.70049 1.22014 1.14513 1.47909 0.86250 0.81727 0.79215 0.79732 1.20234 1.21758 1.21590 1.20725 0.99274 0.92977 0.82222 1.22583 0.93899 1.02135 1.00852 1.21032 0.95369 0.79985 0.98288 0.90630 1.46023 1.64188 1.14095 1.08965 1.17743 0.78630 0.84012 0.84782 1.90762 1.51128 1.68490 1.30771 1.21793 0.93911 0.95454 0.89289 1.22950 1.00344 0.96279 1.00859 1.23294 0.90351 0.92060 0.95917 1.68036 1.16413 1.38818 0.98924 1.22090 0.90361 0.85946 0.93230 1.20690 1.01498 0.97338 0.92813 1.23023 1.01374 0.90369 1.04242 1.22980 0.90139 1.02848 1.03330 1.68101 1.11313 1.11523 1.29228 0.93013 0.92613 0.93299 0.92401 0.96635 0.93713 0.89577 0.96363 0.92684 0.91504 0.74871 0.82225 0.80691 0.84797 0.87277 0.88041 0.87786 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 37.16 0.34 -1.60 16 2 C -0.12 -1.96 2.67 -90.50 -0.24 -2.20 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.15 2.99 5.50 -3.71 -0.02 2.97 16 5 N -0.59 -14.34 2.99 -172.32 -0.52 -14.85 16 6 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 7 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 9 N -0.90 -26.05 11.20 55.49 0.62 -25.43 16 10 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.17 4.14 5.05 -3.71 -0.02 4.12 16 15 C -0.15 -3.07 5.77 -26.62 -0.15 -3.22 16 16 C 0.16 2.73 2.21 -67.89 -0.15 2.58 16 17 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 18 N -0.68 -11.57 3.59 -54.52 -0.20 -11.77 16 19 C 0.57 9.59 7.79 -12.05 -0.09 9.49 16 20 O -0.53 -9.98 16.09 5.38 0.09 -9.89 16 21 C 0.14 2.17 6.79 -82.64 -0.56 1.60 16 22 C -0.18 -2.18 9.72 -38.91 -0.38 -2.56 16 23 C 0.15 1.55 11.31 -17.20 -0.19 1.35 16 24 N -0.51 -6.16 9.32 -10.73 -0.10 -6.26 16 25 C 0.35 4.73 7.31 -157.30 -1.15 3.58 16 26 C -0.10 -1.16 6.23 -91.77 -0.57 -1.74 16 27 C -0.15 -1.37 10.01 -26.73 -0.27 -1.63 16 28 C -0.15 -1.37 10.23 -26.73 -0.27 -1.64 16 29 N -0.49 -7.35 9.60 -7.32 -0.07 -7.42 16 30 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 34 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 37 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.41 7.14 6.11 -40.82 -0.25 6.90 16 41 H 0.16 1.68 7.74 -52.48 -0.41 1.28 16 42 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 44 H 0.11 1.02 7.53 -51.93 -0.39 0.63 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -31.20 380.24 -10.52 -41.73 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.08 Total: 7.49 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.97 Total: 4.15 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.26 Total: -65.73 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.20 -10.52 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.003 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds