Wall clock time and date at job start Tue Mar 31 2020 17:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50154 * 2 1 4 4 C 1.53189 * 109.49677 * 120.09948 * 2 1 3 5 5 N 1.46924 * 108.77616 * 174.58619 * 4 2 1 6 6 C 1.36936 * 120.63495 * 126.36574 * 5 4 2 7 7 H 1.08006 * 120.00088 * 331.83827 * 6 5 4 8 8 C 1.38817 * 120.00251 * 151.82986 * 6 5 4 9 9 N 1.31618 * 119.99812 * 343.08692 * 8 6 5 10 10 Si 1.86804 * 119.99789 * 163.08139 * 8 6 5 11 11 H 1.48500 * 109.46985 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46787 * 120.00375 * 10 8 6 13 13 H 1.48497 * 109.47041 * 239.99993 * 10 8 6 14 14 C 1.46928 * 118.73563 * 306.38791 * 5 4 2 15 15 C 1.53188 * 108.76461 * 53.61780 * 14 5 4 16 16 C 1.53034 * 109.31582 * 305.34278 * 15 14 5 17 17 H 1.08994 * 109.46657 * 181.40262 * 16 15 14 18 18 N 1.46506 * 109.45677 * 301.37528 * 16 15 14 19 19 C 1.34779 * 119.99847 * 275.02050 * 18 16 15 20 20 O 1.21481 * 119.99697 * 0.02562 * 19 18 16 21 21 C 1.48450 * 119.99870 * 180.02562 * 19 18 16 22 22 C 1.39529 * 120.54939 * 179.72327 * 21 19 18 23 23 C 1.38762 * 118.26423 * 179.76237 * 22 21 19 24 24 N 1.32208 * 119.14795 * 0.51523 * 23 22 21 25 25 C 1.31875 * 121.03024 * 359.74297 * 24 23 22 26 26 C 1.50710 * 119.03726 * 180.02562 * 25 24 23 27 27 C 1.53001 * 117.49823 * 8.60025 * 26 25 24 28 28 C 1.52999 * 117.49621 * 299.97902 * 26 25 24 29 29 N 1.31581 * 121.92355 * 359.97438 * 25 24 23 30 30 H 1.08993 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46815 * 300.06824 * 1 2 3 32 32 H 1.08998 * 109.46630 * 60.06479 * 1 2 3 33 33 H 1.09001 * 109.58401 * 294.36850 * 4 2 1 34 34 H 1.09002 * 109.58945 * 54.79671 * 4 2 1 35 35 H 0.96999 * 119.99615 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58162 * 173.39726 * 14 5 4 37 37 H 1.09000 * 109.58869 * 293.81534 * 14 5 4 38 38 H 1.09004 * 109.48497 * 185.39785 * 15 14 5 39 39 H 1.09003 * 109.51074 * 65.30232 * 15 14 5 40 40 H 0.96999 * 120.00036 * 95.03110 * 18 16 15 41 41 H 1.08004 * 120.86939 * 359.97438 * 22 21 19 42 42 H 1.08005 * 120.42565 * 180.23603 * 23 22 21 43 43 H 1.09002 * 115.54829 * 154.31124 * 26 25 24 44 44 H 1.09001 * 117.49826 * 0.02562 * 27 26 25 45 45 H 1.08996 * 117.49978 * 145.02142 * 27 26 25 46 46 H 1.08997 * 117.49966 * 214.97811 * 28 26 25 47 47 H 1.09000 * 117.50360 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2937 -0.3792 2.1939 7 1 3.9501 0.4261 2.8263 8 6 5.5351 -0.9578 2.4199 9 7 5.8212 -2.1290 1.8918 10 14 6.7996 -0.0740 3.4732 11 1 6.2358 1.2161 3.9454 12 1 7.1471 -0.9198 4.6433 13 1 8.0208 0.1837 2.6686 14 6 4.1052 -1.4268 -0.0312 15 6 3.5708 -0.6945 -1.2660 16 6 2.0408 -0.7227 -1.2486 17 1 1.6582 -0.2240 -2.1390 18 7 1.5786 -2.1129 -1.2312 19 6 1.4499 -2.7947 -2.3867 20 8 1.7176 -2.2567 -3.4425 21 6 0.9810 -4.2031 -2.3691 22 6 0.8381 -4.9179 -3.5589 23 6 0.4012 -6.2329 -3.4870 24 7 0.1274 -6.7568 -2.3043 25 6 0.2683 -6.0511 -1.1992 26 6 -0.0561 -6.6933 0.1251 27 6 -0.3405 -8.1966 0.1304 28 6 -1.4844 -7.2009 0.3329 29 7 0.6848 -4.8031 -1.2189 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3632 0.5128 -0.8906 33 1 1.7638 -0.1585 2.1388 34 1 1.6052 -1.7220 1.2975 35 1 6.6888 -2.5331 2.0495 36 1 5.1896 -1.3247 0.0134 37 1 3.8375 -2.4819 -0.0874 38 1 3.9336 -1.1888 -2.1673 39 1 3.9157 0.3395 -1.2537 40 1 1.3651 -2.5425 -0.3882 41 1 1.0649 -4.4606 -4.5107 42 1 0.2819 -6.8196 -4.3859 43 1 0.4603 -6.2753 0.9893 44 1 -0.2925 -8.7213 -0.8239 45 1 -0.0111 -8.7681 0.9981 46 1 -1.9075 -7.1174 1.3339 47 1 -2.1893 -7.0709 -0.4882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943253210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:28 Heat of formation + Delta-G solvation = 42.305646 kcal Electronic energy + Delta-G solvation = -28856.720232 eV Core-core repulsion = 25040.275722 eV Total energy + Delta-G solvation = -3816.444510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44069 -41.10629 -39.22828 -37.92624 -36.07333 -35.10363 -33.88861 -32.94880 -32.86013 -31.71297 -27.56600 -27.41071 -26.40252 -26.08652 -24.00865 -23.24101 -23.09774 -22.69592 -21.53052 -20.17313 -19.36974 -18.87716 -18.52715 -17.00358 -16.86952 -16.72119 -16.69291 -16.47023 -15.86344 -15.71413 -15.59389 -15.38306 -15.10223 -14.86295 -14.75596 -14.57864 -14.23951 -13.56981 -13.24001 -13.18042 -12.99282 -12.74182 -12.56928 -12.42138 -12.40402 -12.16863 -12.05946 -11.99110 -11.97239 -11.89088 -11.72129 -11.57424 -11.49923 -11.37389 -11.14406 -10.55906 -10.44208 -10.37483 -10.08681 -8.68347 -7.87880 -5.33836 -0.65277 -0.16517 1.45199 1.47625 1.57751 1.58488 1.91145 2.50226 2.52317 2.58606 2.88900 3.15240 3.27532 3.46982 3.64753 3.66663 3.75917 3.89779 3.92785 4.02498 4.09184 4.12308 4.15828 4.36445 4.48798 4.55217 4.60046 4.63303 4.73929 4.77590 4.79260 4.93724 4.96254 4.97990 5.05894 5.11398 5.13577 5.22297 5.27338 5.32256 5.39119 5.43024 5.50853 5.63523 5.70422 5.74723 6.36612 6.37810 6.85360 6.99564 7.13248 7.84320 8.36444 9.18314 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003593 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.428726 B = 7791.041669 C = 8711.986791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.071 0.929 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.189 3.811 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.087 0.913 18 N -0.683 5.683 19 C 0.565 3.435 20 O -0.556 6.556 21 C 0.116 3.884 22 C -0.177 4.177 23 C 0.164 3.836 24 N -0.509 5.509 25 C 0.339 3.661 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.139 4.139 29 N -0.512 5.512 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.248 0.752 36 H 0.048 0.952 37 H -0.008 1.008 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.411 0.589 41 H 0.175 0.825 42 H 0.224 0.776 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 -8.029 -8.570 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.245 4.245 9 N -0.582 5.582 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.063 3.937 15 C -0.183 4.183 16 C 0.058 3.942 17 H 0.105 0.895 18 N -0.333 5.333 19 C 0.349 3.651 20 O -0.434 6.434 21 C -0.031 4.031 22 C -0.200 4.200 23 C -0.003 4.003 24 N -0.223 5.223 25 C 0.072 3.928 26 C -0.152 4.152 27 C -0.177 4.177 28 C -0.177 4.177 29 N -0.228 5.228 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.192 0.808 42 H 0.240 0.760 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.052 -8.039 -8.378 19.811 hybrid contribution 1.524 0.546 0.160 1.627 sum -14.528 -7.494 -8.217 18.296 Atomic orbital electron populations 1.21697 0.92859 1.01869 1.02701 1.21811 0.96818 0.99942 0.94055 0.89578 1.21073 0.83571 0.96681 0.96325 1.44270 1.00972 1.71461 1.16198 1.19571 0.99012 1.11645 1.08777 0.91146 1.25788 1.01825 0.95958 1.00938 1.70209 1.22066 1.16089 1.49817 0.85243 0.79073 0.78498 0.77853 1.18777 1.22044 1.22027 1.20382 0.97137 0.92146 0.84085 1.22404 0.96046 1.01466 0.98377 1.20959 0.93283 0.80665 0.99267 0.89462 1.45997 1.64241 1.13963 1.09069 1.18068 0.77906 0.84855 0.84259 1.90733 1.52134 1.69289 1.31248 1.21654 0.95949 0.94831 0.90660 1.23200 0.99589 0.96890 1.00309 1.24082 0.87965 0.91527 0.96770 1.68147 1.16432 1.38519 0.99229 1.22490 0.90185 0.85597 0.94501 1.20768 1.03631 0.99023 0.91748 1.23092 1.00738 0.89040 1.04800 1.23056 0.89015 1.01431 1.04218 1.68040 1.12535 1.12614 1.29656 0.93176 0.91088 0.91689 0.92049 0.96809 0.94327 0.93347 0.98957 0.93140 0.91147 0.75157 0.80783 0.75984 0.85933 0.87461 0.86483 0.86107 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.05 71.98 0.65 -2.65 16 2 C -0.11 -3.36 2.67 -10.71 -0.03 -3.39 16 3 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.15 5.89 5.50 86.36 0.48 6.36 16 5 N -0.61 -29.98 2.99 -699.09 -2.09 -32.07 16 6 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 7 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 8 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 9 N -0.94 -56.13 11.20 21.65 0.24 -55.89 16 10 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 C 0.19 9.35 5.05 86.36 0.44 9.79 16 15 C -0.14 -5.77 5.77 30.67 0.18 -5.59 16 16 C 0.16 5.56 2.21 45.02 0.10 5.66 16 17 H 0.09 2.86 7.58 -2.39 -0.02 2.84 16 18 N -0.68 -23.37 3.59 -444.69 -1.60 -24.97 16 19 C 0.56 19.27 7.79 86.97 0.68 19.95 16 20 O -0.56 -20.63 16.09 -3.66 -0.06 -20.69 16 21 C 0.12 3.48 6.79 41.99 0.29 3.77 16 22 C -0.18 -4.02 9.72 22.71 0.22 -3.80 16 23 C 0.16 2.96 11.31 84.76 0.96 3.91 16 24 N -0.51 -11.53 9.32 -187.88 -1.75 -13.28 16 25 C 0.34 9.03 7.31 138.79 1.01 10.04 16 26 C -0.13 -2.93 6.23 -11.54 -0.07 -3.00 16 27 C -0.14 -2.29 10.01 30.59 0.31 -1.98 16 28 C -0.14 -2.25 10.23 30.59 0.31 -1.94 16 29 N -0.51 -15.73 9.60 -177.08 -1.70 -17.43 16 30 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 34 H 0.01 0.56 6.64 -2.39 -0.02 0.55 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.05 2.75 6.06 -2.38 -0.01 2.74 16 37 H -0.01 -0.41 7.74 -2.39 -0.02 -0.43 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.41 14.55 6.11 -92.71 -0.57 13.98 16 41 H 0.17 3.36 7.74 -2.91 -0.02 3.34 16 42 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.11 1.82 7.53 -2.39 -0.02 1.80 16 45 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -69.60 380.24 2.23 -67.37 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.42 Total: 28.48 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 6.74 Total: 21.42 kcal Atomic # 7 Polarization: -136.74 SS G_CDS: -6.90 Total: -143.64 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.60 2.23 -67.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.680 kcal (2) G-P(sol) polarization free energy of solvation -69.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds