Wall clock time and date at job start Tue Mar 31 2020 17:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49557 * 2 1 4 4 C 1.53193 * 109.52663 * 239.91318 * 2 1 3 5 5 N 1.46928 * 108.77610 * 185.39885 * 4 2 1 6 6 C 1.36936 * 120.62981 * 233.58704 * 5 4 2 7 7 H 1.08000 * 119.99999 * 27.68378 * 6 5 4 8 8 C 1.38813 * 119.99632 * 207.67943 * 6 5 4 9 9 N 1.31611 * 120.00385 * 17.37909 * 8 6 5 10 10 Si 1.86804 * 119.99561 * 197.37798 * 8 6 5 11 11 H 1.48499 * 109.47299 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46979 * 120.00076 * 10 8 6 13 13 H 1.48496 * 109.47193 * 240.00099 * 10 8 6 14 14 C 1.46924 * 118.73748 * 53.60962 * 5 4 2 15 15 C 1.53192 * 108.77707 * 306.38832 * 14 5 4 16 16 C 1.53041 * 109.49649 * 120.06180 * 2 1 3 17 17 H 1.09005 * 109.45525 * 301.35788 * 16 2 1 18 18 N 1.46500 * 109.46360 * 61.32714 * 16 2 1 19 19 C 1.34777 * 120.00202 * 205.00418 * 18 16 2 20 20 O 1.21478 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.48451 * 119.99993 * 180.02562 * 19 18 16 22 22 C 1.39539 * 120.55141 * 179.97438 * 21 19 18 23 23 C 1.38759 * 118.26210 * 179.97438 * 22 21 19 24 24 N 1.32200 * 119.15333 * 0.02562 * 23 22 21 25 25 C 1.31887 * 121.03410 * 359.97438 * 24 23 22 26 26 C 1.50696 * 119.04267 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49691 * 8.62361 * 26 25 24 28 28 C 1.53000 * 117.50151 * 300.00101 * 26 25 24 29 29 N 1.31589 * 121.91322 * 359.71293 * 25 24 23 30 30 H 1.08996 * 109.47711 * 299.93970 * 1 2 3 31 31 H 1.09000 * 109.46799 * 59.94047 * 1 2 3 32 32 H 1.09004 * 109.46969 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58682 * 305.18933 * 4 2 1 34 34 H 1.08995 * 109.58369 * 65.46542 * 4 2 1 35 35 H 0.97004 * 119.99985 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.59100 * 66.18012 * 14 5 4 37 37 H 1.09002 * 109.58525 * 186.60487 * 14 5 4 38 38 H 1.09000 * 109.49980 * 294.68906 * 15 14 5 39 39 H 1.09001 * 109.50387 * 174.58537 * 15 14 5 40 40 H 0.97002 * 119.99457 * 25.00204 * 18 16 2 41 41 H 1.08002 * 120.86682 * 359.97438 * 22 21 19 42 42 H 1.07999 * 120.42095 * 179.97438 * 23 22 21 43 43 H 1.08999 * 115.54834 * 154.32866 * 26 25 24 44 44 H 1.08998 * 117.50052 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.49834 * 145.01638 * 27 26 25 46 46 H 1.08998 * 117.49963 * 214.98007 * 28 26 25 47 47 H 1.09004 * 117.49413 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5054 -0.8284 -1.1688 6 6 4.2944 -0.3784 -2.1935 7 1 3.9473 0.4210 -2.8313 8 6 5.5404 -0.9498 -2.4124 9 7 5.8296 -2.1202 -1.8845 10 14 6.8067 -0.0574 -3.4563 11 1 6.2393 1.2308 -3.9292 12 1 8.0213 0.2059 -2.6436 13 1 7.1663 -0.8993 -4.6255 14 6 4.1059 -1.4255 0.0318 15 6 3.5708 -0.6939 1.2668 16 6 2.0408 -0.7227 1.2486 17 1 1.6578 -0.2239 2.1390 18 7 1.5789 -2.1129 1.2312 19 6 1.4507 -2.7949 2.3866 20 8 1.7186 -2.2571 3.4424 21 6 0.9833 -4.2038 2.3689 22 6 0.8469 -4.9209 3.5581 23 6 0.4058 -6.2345 3.4864 24 7 0.1324 -6.7584 2.3038 25 6 0.2722 -6.0524 1.1986 26 6 -0.0517 -6.6945 -0.1256 27 6 -0.7191 -8.0711 -0.0987 28 6 0.7455 -7.9391 -0.5211 29 7 0.6816 -4.8019 1.2191 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6064 -1.7218 -1.2977 34 1 1.7623 -0.1596 -2.1389 35 1 6.7002 -2.5196 -2.0379 36 1 3.8387 -2.4807 0.0879 37 1 5.1902 -1.3229 -0.0124 38 1 3.9154 0.3402 1.2547 39 1 3.9333 -1.1882 2.1681 40 1 1.3654 -2.5424 0.3881 41 1 1.0787 -4.4653 4.5095 42 1 0.2882 -6.8217 4.3851 43 1 -0.3427 -6.0092 -0.9217 44 1 -0.9235 -8.5123 0.8768 45 1 -1.4495 -8.2916 -0.8772 46 1 0.9787 -8.0728 -1.5774 47 1 1.5041 -8.2936 0.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943253211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:32 Heat of formation + Delta-G solvation = 60.461264 kcal Electronic energy + Delta-G solvation = -28876.558307 eV Core-core repulsion = 25060.901083 eV Total energy + Delta-G solvation = -3815.657223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42486 -39.74618 -37.76418 -37.06164 -34.38688 -33.98229 -32.43836 -31.93149 -31.11479 -30.00609 -26.27454 -25.71333 -25.19207 -24.92128 -22.59360 -22.46217 -21.73508 -21.11426 -20.39227 -18.65455 -18.18857 -17.78277 -16.71526 -15.96553 -15.68796 -15.53731 -15.19608 -14.93064 -14.78713 -14.34495 -14.28197 -13.95883 -13.74879 -13.69497 -13.30327 -12.93986 -12.56639 -12.39369 -12.12739 -11.69217 -11.50299 -11.37846 -11.16155 -11.10168 -11.08146 -10.90128 -10.83883 -10.71694 -10.63795 -10.35522 -10.23116 -10.19628 -10.05160 -9.75248 -9.47882 -9.45943 -9.35901 -8.66224 -8.46800 -6.68550 -5.79573 -3.22290 0.40271 0.74755 2.77671 3.13126 3.36516 3.44734 3.46567 3.47782 3.54544 3.81161 4.03373 4.47838 4.52209 4.65126 4.71646 4.81573 4.85414 4.98425 5.13906 5.30631 5.33417 5.35781 5.48707 5.50468 5.51298 5.59415 5.68113 5.85076 5.93646 5.97252 6.01735 6.07889 6.10906 6.14960 6.27382 6.32860 6.44122 6.59024 6.64507 6.66839 6.76362 6.90729 6.93428 7.35991 7.66249 7.68742 7.79083 7.89305 8.31863 8.43114 9.19654 9.83173 10.39290 11.28483 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.003696 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.748786 B = 7573.583765 C = 8698.664439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.157 3.843 17 H 0.076 0.924 18 N -0.682 5.682 19 C 0.566 3.434 20 O -0.535 6.535 21 C 0.144 3.856 22 C -0.182 4.182 23 C 0.151 3.849 24 N -0.508 5.508 25 C 0.351 3.649 26 C -0.103 4.103 27 C -0.154 4.154 28 C -0.152 4.152 29 N -0.486 5.486 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.160 0.840 42 H 0.176 0.824 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 -8.118 7.911 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 H 0.102 0.898 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.730 3.270 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.053 3.947 17 H 0.094 0.906 18 N -0.333 5.333 19 C 0.348 3.652 20 O -0.411 6.411 21 C -0.004 4.004 22 C -0.204 4.204 23 C -0.016 4.016 24 N -0.222 5.222 25 C 0.084 3.916 26 C -0.123 4.123 27 C -0.191 4.191 28 C -0.191 4.191 29 N -0.202 5.202 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.251 0.749 41 H 0.178 0.822 42 H 0.193 0.807 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.516 -8.143 7.730 17.571 hybrid contribution 0.954 0.596 -0.003 1.125 sum -12.562 -7.546 7.728 16.567 Atomic orbital electron populations 1.21776 0.95711 1.01438 1.01137 1.21955 0.94618 1.00757 0.96608 0.89800 1.20916 0.86125 0.96268 0.94313 1.44061 0.99132 1.71537 1.16557 1.19213 0.98167 1.12353 1.08557 0.91589 1.25024 0.99887 0.95345 0.99248 1.70050 1.21773 1.14650 1.48003 0.86254 0.81759 0.79267 0.79674 1.20240 1.21597 1.21762 1.20728 0.99311 0.92969 0.82205 1.22585 0.93898 1.02137 1.00849 1.21034 0.95376 0.79983 0.98286 0.90633 1.46021 1.64200 1.14084 1.08967 1.17741 0.78629 0.84013 0.84780 1.90761 1.51110 1.68513 1.30762 1.21795 0.93920 0.95439 0.89291 1.22950 1.00377 0.96258 1.00862 1.23289 0.90311 0.92088 0.95930 1.68035 1.16271 1.38978 0.98912 1.22099 0.90311 0.85967 0.93244 1.20659 1.07713 0.91270 0.92703 1.23024 0.95547 0.96678 1.03883 1.22998 0.95102 0.98356 1.02620 1.68102 1.11218 1.11717 1.29160 0.93288 0.92614 0.93022 0.96662 0.92410 0.93716 0.96377 0.89525 0.91504 0.92681 0.74874 0.82228 0.80695 0.84986 0.87318 0.88146 0.87642 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.06 37.16 0.34 -1.60 16 2 C -0.12 -1.96 2.67 -90.50 -0.24 -2.20 16 3 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.15 2.99 5.50 -3.71 -0.02 2.97 16 5 N -0.59 -14.34 2.99 -172.32 -0.52 -14.86 16 6 C -0.25 -6.82 9.59 -15.06 -0.14 -6.96 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 10 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.17 4.14 5.05 -3.71 -0.02 4.12 16 15 C -0.15 -3.07 5.77 -26.61 -0.15 -3.22 16 16 C 0.16 2.73 2.21 -67.89 -0.15 2.58 16 17 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 18 N -0.68 -11.57 3.59 -54.51 -0.20 -11.77 16 19 C 0.57 9.59 7.79 -12.05 -0.09 9.50 16 20 O -0.53 -9.98 16.09 5.39 0.09 -9.89 16 21 C 0.14 2.17 6.79 -82.64 -0.56 1.61 16 22 C -0.18 -2.19 9.72 -38.90 -0.38 -2.57 16 23 C 0.15 1.55 11.31 -17.20 -0.19 1.35 16 24 N -0.51 -6.16 9.32 -10.74 -0.10 -6.26 16 25 C 0.35 4.73 7.31 -157.29 -1.15 3.58 16 26 C -0.10 -1.16 6.23 -91.77 -0.57 -1.74 16 27 C -0.15 -1.36 10.01 -26.73 -0.27 -1.62 16 28 C -0.15 -1.50 10.23 -26.73 -0.27 -1.78 16 29 N -0.49 -7.36 9.60 -7.32 -0.07 -7.43 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 33 H 0.02 0.31 6.64 -51.93 -0.34 -0.03 16 34 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 37 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.41 7.15 6.12 -40.82 -0.25 6.90 16 41 H 0.16 1.69 7.74 -52.49 -0.41 1.28 16 42 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.11 1.00 7.53 -51.93 -0.39 0.60 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.21 380.23 -10.52 -41.74 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.08 Total: 7.62 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.97 Total: 4.03 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.26 Total: -65.73 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.21 -10.52 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.197 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds