Wall clock time and date at job start Tue Mar 31 2020 17:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49557 * 2 1 4 4 C 1.53193 * 109.52663 * 239.91318 * 2 1 3 5 5 N 1.46928 * 108.77610 * 185.39885 * 4 2 1 6 6 C 1.36936 * 120.62981 * 233.58704 * 5 4 2 7 7 H 1.08000 * 119.99999 * 27.68378 * 6 5 4 8 8 C 1.38813 * 119.99632 * 207.67943 * 6 5 4 9 9 N 1.31611 * 120.00385 * 17.37909 * 8 6 5 10 10 Si 1.86804 * 119.99561 * 197.37798 * 8 6 5 11 11 H 1.48499 * 109.47299 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46979 * 120.00076 * 10 8 6 13 13 H 1.48496 * 109.47193 * 240.00099 * 10 8 6 14 14 C 1.46924 * 118.73748 * 53.60962 * 5 4 2 15 15 C 1.53192 * 108.77707 * 306.38832 * 14 5 4 16 16 C 1.53041 * 109.49649 * 120.06180 * 2 1 3 17 17 H 1.09005 * 109.45525 * 301.35788 * 16 2 1 18 18 N 1.46500 * 109.46360 * 61.32714 * 16 2 1 19 19 C 1.34777 * 120.00202 * 205.00418 * 18 16 2 20 20 O 1.21478 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.48451 * 119.99993 * 180.02562 * 19 18 16 22 22 C 1.39539 * 120.55141 * 179.97438 * 21 19 18 23 23 C 1.38759 * 118.26210 * 179.97438 * 22 21 19 24 24 N 1.32200 * 119.15333 * 0.02562 * 23 22 21 25 25 C 1.31887 * 121.03410 * 359.97438 * 24 23 22 26 26 C 1.50696 * 119.04267 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49691 * 8.62361 * 26 25 24 28 28 C 1.53000 * 117.50151 * 300.00101 * 26 25 24 29 29 N 1.31589 * 121.91322 * 359.71293 * 25 24 23 30 30 H 1.08996 * 109.47711 * 299.93970 * 1 2 3 31 31 H 1.09000 * 109.46799 * 59.94047 * 1 2 3 32 32 H 1.09004 * 109.46969 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58682 * 305.18933 * 4 2 1 34 34 H 1.08995 * 109.58369 * 65.46542 * 4 2 1 35 35 H 0.97004 * 119.99985 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.59100 * 66.18012 * 14 5 4 37 37 H 1.09002 * 109.58525 * 186.60487 * 14 5 4 38 38 H 1.09000 * 109.49980 * 294.68906 * 15 14 5 39 39 H 1.09001 * 109.50387 * 174.58537 * 15 14 5 40 40 H 0.97002 * 119.99457 * 25.00204 * 18 16 2 41 41 H 1.08002 * 120.86682 * 359.97438 * 22 21 19 42 42 H 1.07999 * 120.42095 * 179.97438 * 23 22 21 43 43 H 1.08999 * 115.54834 * 154.32866 * 26 25 24 44 44 H 1.08998 * 117.50052 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.49834 * 145.01638 * 27 26 25 46 46 H 1.08998 * 117.49963 * 214.98007 * 28 26 25 47 47 H 1.09004 * 117.49413 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5054 -0.8284 -1.1688 6 6 4.2944 -0.3784 -2.1935 7 1 3.9473 0.4210 -2.8313 8 6 5.5404 -0.9498 -2.4124 9 7 5.8296 -2.1202 -1.8845 10 14 6.8067 -0.0574 -3.4563 11 1 6.2393 1.2308 -3.9292 12 1 8.0213 0.2059 -2.6436 13 1 7.1663 -0.8993 -4.6255 14 6 4.1059 -1.4255 0.0318 15 6 3.5708 -0.6939 1.2668 16 6 2.0408 -0.7227 1.2486 17 1 1.6578 -0.2239 2.1390 18 7 1.5789 -2.1129 1.2312 19 6 1.4507 -2.7949 2.3866 20 8 1.7186 -2.2571 3.4424 21 6 0.9833 -4.2038 2.3689 22 6 0.8469 -4.9209 3.5581 23 6 0.4058 -6.2345 3.4864 24 7 0.1324 -6.7584 2.3038 25 6 0.2722 -6.0524 1.1986 26 6 -0.0517 -6.6945 -0.1256 27 6 -0.7191 -8.0711 -0.0987 28 6 0.7455 -7.9391 -0.5211 29 7 0.6816 -4.8019 1.2191 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6064 -1.7218 -1.2977 34 1 1.7623 -0.1596 -2.1389 35 1 6.7002 -2.5196 -2.0379 36 1 3.8387 -2.4807 0.0879 37 1 5.1902 -1.3229 -0.0124 38 1 3.9154 0.3402 1.2547 39 1 3.9333 -1.1882 2.1681 40 1 1.3654 -2.5424 0.3881 41 1 1.0787 -4.4653 4.5095 42 1 0.2882 -6.8217 4.3851 43 1 -0.3427 -6.0092 -0.9217 44 1 -0.9235 -8.5123 0.8768 45 1 -1.4495 -8.2916 -0.8772 46 1 0.9787 -8.0728 -1.5774 47 1 1.5041 -8.2936 0.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943253211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:32 Heat of formation + Delta-G solvation = 42.500439 kcal Electronic energy + Delta-G solvation = -28877.337147 eV Core-core repulsion = 25060.901083 eV Total energy + Delta-G solvation = -3816.436063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44051 -41.10629 -39.22849 -37.92983 -36.07500 -35.10461 -33.88953 -32.94787 -32.85997 -31.71379 -27.56614 -27.41093 -26.40367 -26.09021 -24.00909 -23.24017 -23.10292 -22.69711 -21.53113 -20.17245 -19.37011 -18.87701 -18.52751 -16.98190 -16.94638 -16.74847 -16.57196 -16.47467 -15.95478 -15.74425 -15.52629 -15.30214 -15.17955 -14.86048 -14.75446 -14.57679 -14.23759 -13.56931 -13.24921 -13.18198 -12.99535 -12.74193 -12.56536 -12.42377 -12.40692 -12.16728 -12.07242 -11.99309 -11.96219 -11.88789 -11.71924 -11.57438 -11.49978 -11.37782 -11.14400 -10.55568 -10.44119 -10.37663 -10.08816 -8.68879 -7.87735 -5.33019 -0.65364 -0.16696 1.45249 1.47827 1.57860 1.58270 1.91423 2.50460 2.52567 2.57018 2.89752 3.15166 3.27550 3.47075 3.64723 3.66693 3.75934 3.89628 3.92937 4.02486 4.09138 4.10777 4.15462 4.36444 4.47944 4.55137 4.59988 4.63361 4.73940 4.77452 4.79318 4.93706 4.95816 4.97980 5.05880 5.10455 5.13647 5.21770 5.27325 5.32235 5.39146 5.43101 5.50995 5.63602 5.70646 5.74571 6.36586 6.37733 6.85233 6.99516 7.13305 7.84569 8.36435 9.18479 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.003696 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.748786 B = 7573.583765 C = 8698.664439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.071 0.929 8 C -0.050 4.050 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.188 3.812 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.087 0.913 18 N -0.683 5.683 19 C 0.565 3.435 20 O -0.556 6.556 21 C 0.116 3.884 22 C -0.177 4.177 23 C 0.164 3.836 24 N -0.509 5.509 25 C 0.338 3.662 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.155 4.155 29 N -0.511 5.511 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.061 0.939 35 H 0.248 0.752 36 H -0.008 1.008 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.411 0.589 41 H 0.175 0.825 42 H 0.224 0.776 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.552 -8.261 8.490 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.245 4.245 9 N -0.582 5.582 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.062 3.938 15 C -0.183 4.183 16 C 0.058 3.942 17 H 0.105 0.895 18 N -0.333 5.333 19 C 0.349 3.651 20 O -0.434 6.434 21 C -0.031 4.031 22 C -0.200 4.200 23 C -0.003 4.003 24 N -0.223 5.223 25 C 0.072 3.928 26 C -0.147 4.147 27 C -0.166 4.166 28 C -0.193 4.193 29 N -0.228 5.228 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.010 0.990 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.192 0.808 42 H 0.240 0.760 43 H 0.148 0.852 44 H 0.126 0.874 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.427 -8.264 8.301 19.370 hybrid contribution 1.501 0.564 -0.151 1.610 sum -13.926 -7.700 8.150 17.879 Atomic orbital electron populations 1.21698 0.92853 1.01878 1.02702 1.21808 0.96816 0.99945 0.94055 0.89586 1.21067 0.83568 0.96697 0.96324 1.44272 1.00969 1.71462 1.16183 1.19572 0.98683 1.12074 1.08659 0.91125 1.25767 1.01763 0.96002 1.00981 1.70209 1.21813 1.16225 1.49915 0.85250 0.79104 0.78524 0.77829 1.18798 1.22043 1.22040 1.20385 0.97180 0.92132 0.84063 1.22406 0.96046 1.01466 0.98380 1.20960 0.93289 0.80665 0.99266 0.89473 1.45993 1.64251 1.13949 1.09071 1.18065 0.77906 0.84853 0.84260 1.90732 1.52117 1.69310 1.31243 1.21656 0.95962 0.94820 0.90662 1.23203 0.99600 0.96856 1.00318 1.24076 0.87935 0.91554 0.96784 1.68145 1.16242 1.38709 0.99221 1.22505 0.90167 0.85641 0.94524 1.20791 1.09693 0.92170 0.92071 1.23093 0.95108 0.94003 1.04431 1.23047 0.95769 0.97446 1.03040 1.68039 1.12378 1.12811 1.29580 0.91690 0.91090 0.93160 0.96819 0.92046 0.94325 0.98971 0.93289 0.91156 0.93139 0.75152 0.80786 0.75991 0.85229 0.87368 0.85905 0.86583 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.06 71.98 0.65 -2.65 16 2 C -0.11 -3.36 2.67 -10.72 -0.03 -3.39 16 3 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.15 5.88 5.50 86.36 0.48 6.35 16 5 N -0.61 -29.94 2.99 -699.10 -2.09 -32.04 16 6 C -0.26 -14.13 9.59 84.03 0.81 -13.32 16 7 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 8 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 9 N -0.94 -56.06 11.19 21.65 0.24 -55.82 16 10 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 C 0.19 9.34 5.05 86.36 0.44 9.77 16 15 C -0.14 -5.77 5.77 30.67 0.18 -5.59 16 16 C 0.16 5.55 2.21 45.02 0.10 5.65 16 17 H 0.09 2.85 7.58 -2.38 -0.02 2.84 16 18 N -0.68 -23.33 3.59 -444.69 -1.60 -24.93 16 19 C 0.56 19.25 7.79 86.97 0.68 19.93 16 20 O -0.56 -20.62 16.09 -3.65 -0.06 -20.68 16 21 C 0.12 3.48 6.79 41.99 0.29 3.76 16 22 C -0.18 -4.01 9.72 22.71 0.22 -3.79 16 23 C 0.16 2.95 11.31 84.76 0.96 3.91 16 24 N -0.51 -11.51 9.32 -187.89 -1.75 -13.27 16 25 C 0.34 8.99 7.31 138.78 1.01 10.00 16 26 C -0.13 -2.81 6.23 -11.54 -0.07 -2.88 16 27 C -0.13 -2.05 10.01 30.60 0.31 -1.74 16 28 C -0.15 -2.94 10.23 30.59 0.31 -2.63 16 29 N -0.51 -15.66 9.60 -177.08 -1.70 -17.36 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.27 7.54 -2.38 -0.02 1.25 16 33 H 0.01 0.56 6.64 -2.39 -0.02 0.54 16 34 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 35 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 36 H -0.01 -0.42 7.74 -2.39 -0.02 -0.44 16 37 H 0.05 2.79 6.04 -2.39 -0.01 2.77 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 14.51 6.12 -92.71 -0.57 13.94 16 41 H 0.17 3.36 7.74 -2.91 -0.02 3.34 16 42 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.11 1.76 7.53 -2.39 -0.02 1.74 16 45 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -69.51 380.23 2.23 -67.29 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.42 Total: 28.76 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.74 Total: 21.01 kcal Atomic # 7 Polarization: -136.51 SS G_CDS: -6.90 Total: -143.41 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.51 2.23 -67.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943253211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.788 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds