Wall clock time and date at job start Tue Mar 31 2020 17:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.49882 * 2 1 4 4 C 1.53195 * 109.49771 * 239.93499 * 2 1 3 5 5 N 1.46939 * 108.77252 * 185.44770 * 4 2 1 6 6 C 1.36941 * 120.60230 * 233.58162 * 5 4 2 7 7 H 1.07998 * 120.00123 * 27.65060 * 6 5 4 8 8 C 1.38814 * 119.99620 * 207.65617 * 6 5 4 9 9 N 1.31616 * 120.00307 * 17.36264 * 8 6 5 10 10 Si 1.86800 * 119.99747 * 197.36612 * 8 6 5 11 11 H 1.48498 * 109.47284 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46897 * 119.99613 * 10 8 6 13 13 H 1.48494 * 109.47303 * 239.99560 * 10 8 6 14 14 C 1.46922 * 118.76485 * 53.55380 * 5 4 2 15 15 C 1.53193 * 108.77599 * 306.41479 * 14 5 4 16 16 C 1.53033 * 109.31226 * 54.63531 * 15 14 5 17 17 H 1.09003 * 109.44618 * 178.62158 * 16 15 14 18 18 N 1.46496 * 109.46545 * 58.65517 * 16 15 14 19 19 C 1.34779 * 119.99758 * 84.92742 * 18 16 15 20 20 O 1.21547 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.47833 * 119.99864 * 180.02562 * 19 18 16 22 22 C 1.39949 * 120.93733 * 359.71739 * 21 19 18 23 23 N 1.32153 * 118.92419 * 179.71891 * 22 21 19 24 24 C 1.31877 * 120.96278 * 0.57261 * 23 22 21 25 25 C 1.50702 * 118.94837 * 179.67852 * 24 23 22 26 26 C 1.52993 * 117.50202 * 8.76777 * 25 24 23 27 27 C 1.53004 * 117.50004 * 300.10605 * 25 24 23 28 28 N 1.31863 * 122.09641 * 359.70298 * 24 23 22 29 29 C 1.32146 * 120.97116 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.46925 * 300.00240 * 1 2 3 31 31 H 1.09005 * 109.47018 * 60.00068 * 1 2 3 32 32 H 1.08998 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58992 * 305.19998 * 4 2 1 34 34 H 1.09003 * 109.58622 * 65.62617 * 4 2 1 35 35 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.58513 * 186.62259 * 14 5 4 37 37 H 1.08994 * 109.70443 * 66.27199 * 14 5 4 38 38 H 1.08999 * 109.49561 * 294.68168 * 15 14 5 39 39 H 1.09002 * 109.49449 * 174.59038 * 15 14 5 40 40 H 0.97003 * 120.00465 * 264.93492 * 18 16 15 41 41 H 1.07999 * 120.54153 * 359.97438 * 22 21 19 42 42 H 1.09003 * 115.54683 * 154.44394 * 25 24 23 43 43 H 1.09009 * 117.49995 * 359.97438 * 26 25 24 44 44 H 1.08998 * 117.50388 * 145.02052 * 26 25 24 45 45 H 1.08994 * 117.49705 * 214.98116 * 27 25 24 46 46 H 1.09002 * 117.49772 * 0.02562 * 27 25 24 47 47 H 1.07995 * 120.54725 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8295 -1.1694 6 6 4.2936 -0.3795 -2.1942 7 1 3.9466 0.4203 -2.8317 8 6 5.5393 -0.9513 -2.4136 9 7 5.8283 -2.1219 -1.8859 10 14 6.8055 -0.0593 -3.4578 11 1 6.2380 1.2287 -3.9313 12 1 8.0205 0.2035 -2.6454 13 1 7.1645 -0.9011 -4.6272 14 6 4.1053 -1.4267 0.0311 15 6 3.5708 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6584 -0.2238 2.1389 18 7 1.5783 -2.1127 1.2313 19 6 1.4502 -2.7946 2.3868 20 8 1.7180 -2.2561 3.4431 21 6 0.9840 -4.1973 2.3695 22 6 0.6646 -4.8345 1.1651 23 7 0.2570 -6.0913 1.1954 24 6 0.1392 -6.7390 2.3381 25 6 -0.3366 -8.1688 2.3204 26 6 -0.4612 -8.8551 0.9587 27 6 -1.7198 -8.4458 1.7279 28 7 0.4239 -6.1752 3.4956 29 6 0.8442 -4.9239 3.5575 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7213 -1.2986 34 1 1.7637 -0.1573 -2.1390 35 1 6.6989 -2.5213 -2.0390 36 1 5.1895 -1.3247 -0.0135 37 1 3.8397 -2.4822 0.0887 38 1 3.9159 0.3392 1.2539 39 1 3.9335 -1.1891 2.1674 40 1 1.3643 -2.5423 0.3884 41 1 0.7538 -4.3091 0.2258 42 1 -0.0193 -8.7803 3.1651 43 1 -0.1994 -8.2723 0.0755 44 1 -0.2262 -9.9182 0.9075 45 1 -2.3122 -9.2398 2.1824 46 1 -2.2855 -7.5939 1.3504 47 1 1.0751 -4.4689 4.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943371993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:43 Heat of formation + Delta-G solvation = 58.686480 kcal Electronic energy + Delta-G solvation = -28592.361810 eV Core-core repulsion = 24776.627626 eV Total energy + Delta-G solvation = -3815.734184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46992 -39.81572 -37.80864 -37.14057 -34.48316 -33.96774 -32.81720 -31.96816 -31.12328 -29.96116 -26.35948 -25.81435 -25.13514 -24.71616 -22.61926 -22.48549 -21.81007 -21.18271 -20.71096 -18.81145 -18.15614 -17.79223 -16.98598 -16.63395 -15.59685 -15.51396 -15.05390 -14.90949 -14.63498 -14.46644 -14.16656 -14.08340 -13.74561 -13.66739 -13.36193 -12.99290 -12.66408 -12.49098 -12.19094 -11.84565 -11.66279 -11.56605 -11.43340 -11.15886 -11.14858 -11.06056 -10.89051 -10.76544 -10.75332 -10.39626 -10.28030 -10.12751 -9.84007 -9.80558 -9.54919 -9.48521 -9.45883 -8.72986 -8.52056 -6.75310 -5.85208 -3.28219 0.25727 0.85595 2.78294 3.20135 3.33477 3.41720 3.42031 3.43491 3.48470 3.74513 3.96074 4.29272 4.43740 4.56600 4.61252 4.71517 4.74917 4.83400 5.07844 5.12354 5.24246 5.29955 5.36620 5.42425 5.52880 5.54120 5.56060 5.79498 5.80978 5.89385 5.95749 6.00463 6.06040 6.09026 6.19675 6.25162 6.37026 6.54041 6.59101 6.66922 6.68460 6.80988 6.87319 7.29159 7.60089 7.62649 7.74297 7.81681 8.27161 8.37522 9.14002 9.77219 10.32512 11.22799 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003157 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.730361 B = 8866.151476 C = 9783.261271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.084 0.916 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.161 3.839 17 H 0.076 0.924 18 N -0.702 5.702 19 C 0.568 3.432 20 O -0.539 6.539 21 C -0.242 4.242 22 C 0.191 3.809 23 N -0.517 5.517 24 C 0.363 3.637 25 C -0.107 4.107 26 C -0.152 4.152 27 C -0.154 4.154 28 N -0.519 5.519 29 C 0.210 3.790 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.058 0.942 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.399 0.601 41 H 0.173 0.827 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -7.637 7.298 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.057 3.943 17 H 0.094 0.906 18 N -0.353 5.353 19 C 0.353 3.647 20 O -0.417 6.417 21 C -0.250 4.250 22 C 0.023 3.977 23 N -0.230 5.230 24 C 0.098 3.902 25 C -0.127 4.127 26 C -0.189 4.189 27 C -0.192 4.192 28 N -0.231 5.231 29 C 0.043 3.957 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.035 0.965 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.236 0.764 41 H 0.190 0.810 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.205 -8.259 7.985 18.269 hybrid contribution 1.092 1.139 -0.894 1.813 sum -13.113 -7.120 7.091 16.521 Atomic orbital electron populations 1.21771 0.95705 1.01271 1.01260 1.21970 0.94588 1.00899 0.96596 0.89762 1.20913 0.86148 0.95986 0.94466 1.44079 0.99110 1.71554 1.16588 1.19201 0.98226 1.12418 1.08572 0.91587 1.25030 0.99886 0.95350 0.99222 1.70035 1.21846 1.14607 1.47947 0.86245 0.81722 0.79255 0.79660 1.20245 1.21556 1.21737 1.20719 0.99437 0.92831 0.82212 1.22579 0.93996 1.02131 1.00805 1.20965 0.95256 0.79851 0.98202 0.90569 1.46030 1.66359 1.14620 1.08263 1.17680 0.77948 0.84584 0.84532 1.90762 1.50966 1.69441 1.30528 1.21879 1.08134 0.97980 0.96990 1.23503 0.86827 0.89573 0.97752 1.68150 1.15848 1.08762 1.30282 1.22379 0.88858 0.95343 0.83655 1.20691 1.02377 0.89470 1.00169 1.23075 1.00470 1.00834 0.94555 1.23006 0.89751 1.03561 1.02896 1.68258 1.14017 1.11535 1.29340 1.23478 0.85890 0.87813 0.98521 0.93185 0.92612 0.93213 0.97110 0.92326 0.93656 0.89505 0.96511 0.91559 0.92605 0.76400 0.81009 0.85111 0.86918 0.88003 0.87813 0.88481 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.05 37.16 0.34 -1.41 16 2 C -0.12 -1.84 2.67 -90.50 -0.24 -2.08 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.15 2.80 5.50 -3.70 -0.02 2.78 16 5 N -0.59 -13.70 3.00 -172.31 -0.52 -14.22 16 6 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 10 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.17 3.95 5.05 -3.71 -0.02 3.93 16 15 C -0.16 -2.94 5.77 -26.61 -0.15 -3.09 16 16 C 0.16 2.60 2.21 -67.89 -0.15 2.45 16 17 H 0.08 1.24 7.58 -51.93 -0.39 0.84 16 18 N -0.70 -10.43 3.56 -54.72 -0.19 -10.63 16 19 C 0.57 8.71 7.75 -12.33 -0.10 8.61 16 20 O -0.54 -9.65 16.11 5.32 0.09 -9.57 16 21 C -0.24 -3.26 5.91 -104.69 -0.62 -3.88 16 22 C 0.19 2.40 10.81 -16.77 -0.18 2.22 16 23 N -0.52 -6.68 9.32 -10.39 -0.10 -6.77 16 24 C 0.36 4.58 7.31 -157.06 -1.15 3.43 16 25 C -0.11 -1.04 6.23 -91.77 -0.57 -1.61 16 26 C -0.15 -1.25 10.01 -26.70 -0.27 -1.52 16 27 C -0.15 -1.20 10.24 -26.69 -0.27 -1.47 16 28 N -0.52 -6.83 10.31 -10.39 -0.11 -6.94 16 29 C 0.21 2.73 10.88 -16.77 -0.18 2.55 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.58 7.53 -51.93 -0.39 0.19 16 33 H 0.01 0.20 6.64 -51.93 -0.34 -0.15 16 34 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 37 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 5.56 4.87 -40.82 -0.20 5.36 16 41 H 0.17 1.85 6.54 -52.49 -0.34 1.51 16 42 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.11 1.08 7.53 -51.92 -0.39 0.69 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.18 2.11 7.74 -52.49 -0.41 1.70 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -30.55 377.89 -10.31 -40.86 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.95 Total: 6.05 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -3.82 Total: 4.13 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.29 Total: -63.32 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.55 -10.31 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943371993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.549 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds