Wall clock time and date at job start Tue Mar 31 2020 17:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.49882 * 2 1 4 4 C 1.53195 * 109.49771 * 239.93499 * 2 1 3 5 5 N 1.46939 * 108.77252 * 185.44770 * 4 2 1 6 6 C 1.36941 * 120.60230 * 233.58162 * 5 4 2 7 7 H 1.07998 * 120.00123 * 27.65060 * 6 5 4 8 8 C 1.38814 * 119.99620 * 207.65617 * 6 5 4 9 9 N 1.31616 * 120.00307 * 17.36264 * 8 6 5 10 10 Si 1.86800 * 119.99747 * 197.36612 * 8 6 5 11 11 H 1.48498 * 109.47284 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46897 * 119.99613 * 10 8 6 13 13 H 1.48494 * 109.47303 * 239.99560 * 10 8 6 14 14 C 1.46922 * 118.76485 * 53.55380 * 5 4 2 15 15 C 1.53193 * 108.77599 * 306.41479 * 14 5 4 16 16 C 1.53033 * 109.31226 * 54.63531 * 15 14 5 17 17 H 1.09003 * 109.44618 * 178.62158 * 16 15 14 18 18 N 1.46496 * 109.46545 * 58.65517 * 16 15 14 19 19 C 1.34779 * 119.99758 * 84.92742 * 18 16 15 20 20 O 1.21547 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.47833 * 119.99864 * 180.02562 * 19 18 16 22 22 C 1.39949 * 120.93733 * 359.71739 * 21 19 18 23 23 N 1.32153 * 118.92419 * 179.71891 * 22 21 19 24 24 C 1.31877 * 120.96278 * 0.57261 * 23 22 21 25 25 C 1.50702 * 118.94837 * 179.67852 * 24 23 22 26 26 C 1.52993 * 117.50202 * 8.76777 * 25 24 23 27 27 C 1.53004 * 117.50004 * 300.10605 * 25 24 23 28 28 N 1.31863 * 122.09641 * 359.70298 * 24 23 22 29 29 C 1.32146 * 120.97116 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.46925 * 300.00240 * 1 2 3 31 31 H 1.09005 * 109.47018 * 60.00068 * 1 2 3 32 32 H 1.08998 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58992 * 305.19998 * 4 2 1 34 34 H 1.09003 * 109.58622 * 65.62617 * 4 2 1 35 35 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.58513 * 186.62259 * 14 5 4 37 37 H 1.08994 * 109.70443 * 66.27199 * 14 5 4 38 38 H 1.08999 * 109.49561 * 294.68168 * 15 14 5 39 39 H 1.09002 * 109.49449 * 174.59038 * 15 14 5 40 40 H 0.97003 * 120.00465 * 264.93492 * 18 16 15 41 41 H 1.07999 * 120.54153 * 359.97438 * 22 21 19 42 42 H 1.09003 * 115.54683 * 154.44394 * 25 24 23 43 43 H 1.09009 * 117.49995 * 359.97438 * 26 25 24 44 44 H 1.08998 * 117.50388 * 145.02052 * 26 25 24 45 45 H 1.08994 * 117.49705 * 214.98116 * 27 25 24 46 46 H 1.09002 * 117.49772 * 0.02562 * 27 25 24 47 47 H 1.07995 * 120.54725 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8295 -1.1694 6 6 4.2936 -0.3795 -2.1942 7 1 3.9466 0.4203 -2.8317 8 6 5.5393 -0.9513 -2.4136 9 7 5.8283 -2.1219 -1.8859 10 14 6.8055 -0.0593 -3.4578 11 1 6.2380 1.2287 -3.9313 12 1 8.0205 0.2035 -2.6454 13 1 7.1645 -0.9011 -4.6272 14 6 4.1053 -1.4267 0.0311 15 6 3.5708 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6584 -0.2238 2.1389 18 7 1.5783 -2.1127 1.2313 19 6 1.4502 -2.7946 2.3868 20 8 1.7180 -2.2561 3.4431 21 6 0.9840 -4.1973 2.3695 22 6 0.6646 -4.8345 1.1651 23 7 0.2570 -6.0913 1.1954 24 6 0.1392 -6.7390 2.3381 25 6 -0.3366 -8.1688 2.3204 26 6 -0.4612 -8.8551 0.9587 27 6 -1.7198 -8.4458 1.7279 28 7 0.4239 -6.1752 3.4956 29 6 0.8442 -4.9239 3.5575 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7213 -1.2986 34 1 1.7637 -0.1573 -2.1390 35 1 6.6989 -2.5213 -2.0390 36 1 5.1895 -1.3247 -0.0135 37 1 3.8397 -2.4822 0.0887 38 1 3.9159 0.3392 1.2539 39 1 3.9335 -1.1891 2.1674 40 1 1.3643 -2.5423 0.3884 41 1 0.7538 -4.3091 0.2258 42 1 -0.0193 -8.7803 3.1651 43 1 -0.1994 -8.2723 0.0755 44 1 -0.2262 -9.9182 0.9075 45 1 -2.3122 -9.2398 2.1824 46 1 -2.2855 -7.5939 1.3504 47 1 1.0751 -4.4689 4.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943371993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:42 Heat of formation + Delta-G solvation = 41.635036 kcal Electronic energy + Delta-G solvation = -28593.101216 eV Core-core repulsion = 24776.627626 eV Total energy + Delta-G solvation = -3816.473590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48625 -41.09467 -39.17535 -37.93332 -36.07052 -35.08141 -34.11183 -33.13474 -32.83337 -31.51269 -27.51634 -27.38189 -26.53318 -25.74506 -23.94049 -23.23786 -23.05536 -22.61656 -21.80559 -20.22389 -19.31478 -18.92383 -18.49930 -17.80213 -16.90592 -16.66395 -16.58821 -16.05989 -15.79728 -15.73738 -15.55503 -15.36423 -15.06991 -14.82702 -14.61851 -14.52132 -14.24033 -13.54316 -13.33553 -13.15794 -12.97846 -12.73276 -12.71066 -12.54241 -12.38457 -12.34742 -12.15680 -12.08325 -11.97161 -11.91167 -11.67174 -11.49101 -11.41878 -11.15450 -11.03770 -10.53866 -10.50789 -10.45209 -10.04391 -8.66665 -7.86976 -5.31194 -0.76205 -0.14438 1.45360 1.48822 1.57725 1.65590 2.01344 2.49297 2.51241 2.60685 2.81766 3.12695 3.28653 3.29593 3.54658 3.66755 3.72235 3.85693 3.86275 3.93614 4.06925 4.07765 4.13017 4.30375 4.41494 4.59516 4.60822 4.66326 4.77320 4.79548 4.81385 4.91729 4.98349 5.02043 5.09069 5.09624 5.16984 5.18080 5.31835 5.32121 5.42833 5.48122 5.55470 5.65655 5.68961 5.74554 6.38792 6.40660 6.82747 7.04957 7.15249 7.87059 8.37172 9.18650 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003157 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.730361 B = 8866.151476 C = 9783.261271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.080 0.920 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.256 4.256 7 H 0.069 0.931 8 C -0.050 4.050 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.265 1.265 12 H -0.295 1.295 13 H -0.294 1.294 14 C 0.187 3.813 15 C -0.144 4.144 16 C 0.168 3.832 17 H 0.084 0.916 18 N -0.697 5.697 19 C 0.573 3.427 20 O -0.566 6.566 21 C -0.253 4.253 22 C 0.194 3.806 23 N -0.526 5.526 24 C 0.357 3.643 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.139 4.139 28 N -0.529 5.529 29 C 0.210 3.790 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.247 0.753 36 H 0.046 0.954 37 H 0.000 1.000 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.405 0.595 41 H 0.188 0.812 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.088 0.912 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.350 -7.797 7.162 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.099 0.901 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.387 4.387 7 H 0.087 0.913 8 C -0.245 4.245 9 N -0.579 5.579 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.223 1.223 13 H -0.221 1.221 14 C 0.061 3.939 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.359 3.641 20 O -0.447 6.447 21 C -0.261 4.261 22 C 0.027 3.973 23 N -0.240 5.240 24 C 0.093 3.907 25 C -0.147 4.147 26 C -0.185 4.185 27 C -0.177 4.177 28 N -0.242 5.242 29 C 0.043 3.957 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.018 0.982 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.242 0.758 41 H 0.205 0.795 42 H 0.160 0.840 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.107 0.893 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.331 -8.409 7.836 19.971 hybrid contribution 1.693 1.140 -0.850 2.211 sum -14.638 -7.270 6.986 17.775 Atomic orbital electron populations 1.21708 0.92710 1.02267 1.02537 1.21811 0.96877 0.99857 0.94154 0.90143 1.21109 0.83356 0.97045 0.96214 1.44278 1.01106 1.71518 1.16092 1.19522 0.98681 1.11946 1.08525 0.91313 1.25712 1.01720 0.96068 1.01005 1.70177 1.21771 1.16056 1.49850 0.85307 0.79278 0.78551 0.77909 1.18966 1.22250 1.22124 1.20401 0.97171 0.92455 0.83877 1.22407 0.96354 1.01220 0.98434 1.20837 0.92947 0.80763 0.99063 0.89802 1.45934 1.66082 1.14211 1.08535 1.17859 0.77169 0.85057 0.84036 1.90746 1.52283 1.70192 1.31432 1.21693 1.09619 0.97097 0.97641 1.23758 0.85931 0.89621 0.98038 1.68251 1.16435 1.08818 1.30485 1.23022 0.87824 0.96503 0.83385 1.20904 1.04180 0.88098 1.01501 1.23126 1.00623 1.01640 0.93067 1.23099 0.89083 1.03732 1.01775 1.68345 1.14669 1.11510 1.29695 1.23681 0.85300 0.87904 0.98854 0.91987 0.91308 0.92386 0.95899 0.92169 0.94388 0.93579 0.98153 0.91720 0.93236 0.75762 0.79545 0.84025 0.88476 0.85829 0.85281 0.89341 0.79224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.05 71.98 0.65 -2.22 16 2 C -0.11 -3.05 2.67 -10.72 -0.03 -3.07 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.15 5.26 5.50 86.36 0.48 5.73 16 5 N -0.61 -28.15 3.00 -699.07 -2.09 -30.24 16 6 C -0.26 -13.42 9.58 84.03 0.81 -12.61 16 7 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 8 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 9 N -0.93 -54.06 11.19 21.65 0.24 -53.81 16 10 Si 0.96 44.14 29.59 68.60 2.03 46.17 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.19 8.68 5.05 86.36 0.44 9.12 16 15 C -0.14 -5.48 5.77 30.67 0.18 -5.30 16 16 C 0.17 5.21 2.21 45.02 0.10 5.31 16 17 H 0.08 2.56 7.58 -2.39 -0.02 2.55 16 18 N -0.70 -19.95 3.56 -445.31 -1.58 -21.53 16 19 C 0.57 17.16 7.75 86.78 0.67 17.83 16 20 O -0.57 -20.01 16.11 -3.86 -0.06 -20.07 16 21 C -0.25 -6.66 5.91 -19.91 -0.12 -6.78 16 22 C 0.19 4.71 10.81 85.06 0.92 5.63 16 23 N -0.53 -13.16 9.32 -186.79 -1.74 -14.90 16 24 C 0.36 8.68 7.31 138.71 1.01 9.69 16 25 C -0.13 -2.25 6.23 -11.54 -0.07 -2.32 16 26 C -0.15 -2.15 10.01 30.62 0.31 -1.84 16 27 C -0.14 -1.85 10.24 30.62 0.31 -1.54 16 28 N -0.53 -13.57 10.31 -186.79 -1.93 -15.49 16 29 C 0.21 5.35 10.88 85.06 0.93 6.28 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 33 H 0.02 0.78 6.64 -2.39 -0.02 0.76 16 34 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 35 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.05 2.52 6.03 -2.39 -0.01 2.50 16 37 H 0.00 0.02 7.74 -2.39 -0.02 0.00 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.40 10.70 4.87 -92.71 -0.45 10.25 16 41 H 0.19 3.80 6.54 -2.91 -0.02 3.78 16 42 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.10 1.76 7.53 -2.38 -0.02 1.74 16 44 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 47 H 0.19 4.36 7.74 -2.91 -0.02 4.34 16 Total: -1.00 -66.47 377.89 2.40 -64.07 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.54 Total: 24.18 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.00 Total: 21.63 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -7.10 Total: -135.98 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.47 2.40 -64.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943371993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.703 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds