Wall clock time and date at job start Tue Mar 31 2020 17:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52267 * 2 1 4 4 C 1.53188 * 109.49735 * 239.91600 * 2 1 3 5 5 N 1.46929 * 108.77654 * 185.41664 * 4 2 1 6 6 C 1.36935 * 120.63003 * 233.59160 * 5 4 2 7 7 H 1.08004 * 120.00298 * 26.47923 * 6 5 4 8 8 C 1.38812 * 119.99998 * 206.47569 * 6 5 4 9 9 N 1.31622 * 119.99639 * 16.79636 * 8 6 5 10 10 Si 1.86797 * 120.00193 * 196.79125 * 8 6 5 11 11 H 1.48505 * 109.47320 * 90.00373 * 10 8 6 12 12 H 1.48501 * 109.47483 * 210.00017 * 10 8 6 13 13 H 1.48497 * 109.47613 * 330.00449 * 10 8 6 14 14 C 1.46920 * 118.73945 * 53.60258 * 5 4 2 15 15 C 1.53189 * 108.78239 * 306.40009 * 14 5 4 16 16 C 1.53038 * 109.31281 * 54.62834 * 15 14 5 17 17 H 1.09003 * 109.45940 * 58.66059 * 16 15 14 18 18 N 1.46501 * 109.46345 * 178.61710 * 16 15 14 19 19 C 1.34771 * 120.00191 * 275.07525 * 18 16 15 20 20 O 1.21560 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.47834 * 120.00101 * 180.02562 * 19 18 16 22 22 C 1.39963 * 120.93841 * 2.05124 * 21 19 18 23 23 N 1.32135 * 118.92407 * 179.69917 * 22 21 19 24 24 C 1.31889 * 120.95961 * 0.61427 * 23 22 21 25 25 N 1.31845 * 122.09857 * 359.66167 * 24 23 22 26 26 C 1.32167 * 120.97214 * 0.02562 * 25 24 23 27 27 C 1.50693 * 120.53970 * 180.02562 * 26 25 24 28 28 C 1.53001 * 117.50250 * 358.61045 * 27 26 25 29 29 C 1.52995 * 117.50184 * 289.94544 * 27 26 25 30 30 H 1.08998 * 109.47404 * 299.92367 * 1 2 3 31 31 H 1.09004 * 109.47069 * 59.91868 * 1 2 3 32 32 H 1.09004 * 109.47373 * 179.91761 * 1 2 3 33 33 H 1.08996 * 109.59196 * 305.20210 * 4 2 1 34 34 H 1.09003 * 109.58454 * 65.63126 * 4 2 1 35 35 H 0.97003 * 119.99181 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.58887 * 186.60629 * 14 5 4 37 37 H 1.09005 * 109.58283 * 66.18379 * 14 5 4 38 38 H 1.09003 * 109.49579 * 294.68214 * 15 14 5 39 39 H 1.09001 * 109.50059 * 174.58399 * 15 14 5 40 40 H 0.97000 * 119.99705 * 95.06657 * 18 16 15 41 41 H 1.07999 * 120.53970 * 0.02562 * 22 21 19 42 42 H 1.08005 * 118.94449 * 179.68067 * 24 23 22 43 43 H 1.09003 * 115.54855 * 144.27365 * 27 26 25 44 44 H 1.09000 * 117.49401 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50346 * 145.01520 * 28 27 26 46 46 H 1.08999 * 117.50229 * 214.97937 * 29 27 26 47 47 H 1.08997 * 117.49845 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1695 6 6 4.2936 -0.3794 -2.1943 7 1 3.9387 0.4071 -2.8439 8 6 5.5495 -0.9342 -2.3983 9 7 5.8568 -2.0884 -1.8452 10 14 6.8034 -0.0430 -3.4579 11 1 7.6157 0.8634 -2.6070 12 1 7.6927 -1.0355 -4.1132 13 1 6.0990 0.7518 -4.4959 14 6 4.1052 -1.4267 0.0309 15 6 3.5708 -0.6951 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6966 -1.7573 1.2354 18 7 1.5264 -0.0529 2.4453 19 6 1.3984 -0.7381 3.5988 20 8 1.7093 -1.9124 3.6459 21 6 0.8788 -0.0620 4.8064 22 6 0.4740 1.2771 4.7634 23 7 0.0101 1.8402 5.8651 24 6 -0.0625 1.1629 6.9945 25 7 0.3131 -0.0980 7.0806 26 6 0.7836 -0.7411 6.0262 27 6 1.2096 -2.1824 6.1356 28 6 1.1054 -2.8476 7.5094 29 6 2.4777 -2.4855 6.9360 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.6053 -1.7216 -1.2980 34 1 1.7638 -0.1579 -2.1388 35 1 6.7344 -2.4762 -1.9881 36 1 5.1895 -1.3246 -0.0136 37 1 3.8374 -2.4818 0.0869 38 1 3.9158 0.3389 1.2542 39 1 3.9334 -1.1897 2.1672 40 1 1.2781 0.8840 2.4076 41 1 0.5348 1.8395 3.8434 42 1 -0.4422 1.6569 7.8767 43 1 1.0070 -2.8002 5.2607 44 1 0.7291 -2.2426 8.3343 45 1 0.8347 -3.9031 7.5384 46 1 3.1093 -3.3029 6.5880 47 1 3.0037 -1.6424 7.3839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944553179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:50 Heat of formation + Delta-G solvation = 60.502485 kcal Electronic energy + Delta-G solvation = -28623.886054 eV Core-core repulsion = 24808.230618 eV Total energy + Delta-G solvation = -3815.655436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62128 -39.65929 -37.81161 -37.26518 -34.67768 -33.75329 -32.95601 -32.19875 -31.18477 -29.80722 -26.18548 -25.79430 -25.54905 -24.60192 -22.50936 -22.26631 -21.56611 -21.03948 -20.60295 -19.50278 -18.07737 -17.72618 -17.19579 -16.65047 -15.77605 -15.67924 -15.26888 -14.91503 -14.62228 -14.38618 -14.28584 -13.96042 -13.82633 -13.57020 -13.29489 -12.85608 -12.71291 -12.25422 -12.13492 -11.90498 -11.70915 -11.55030 -11.53736 -11.36463 -11.08663 -10.87418 -10.73195 -10.65474 -10.52122 -10.38537 -10.24677 -10.06215 -9.83098 -9.74791 -9.70422 -9.60249 -9.45131 -8.79407 -8.45635 -6.74074 -5.80940 -3.23537 0.16268 0.66100 2.76228 3.08588 3.36331 3.41665 3.43152 3.44354 3.61640 3.71365 3.78197 4.06544 4.45144 4.46485 4.61633 4.81301 4.87571 4.89093 5.04813 5.09472 5.25203 5.36542 5.44256 5.48123 5.55250 5.55862 5.71667 5.83267 5.90805 5.95279 6.00748 6.04591 6.10011 6.19097 6.21962 6.30202 6.38889 6.53556 6.59235 6.62346 6.72938 6.84334 6.90654 7.34404 7.51132 7.66532 7.67952 7.76711 8.19460 8.41378 9.17913 9.81219 10.36434 11.27214 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.002909 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.657459 B = 9624.563324 C =10303.282178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.903 3.097 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.172 3.828 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.085 0.915 18 N -0.714 5.714 19 C 0.565 3.435 20 O -0.521 6.521 21 C -0.233 4.233 22 C 0.183 3.817 23 N -0.528 5.528 24 C 0.314 3.686 25 N -0.523 5.523 26 C 0.264 3.736 27 C -0.124 4.124 28 C -0.164 4.164 29 C -0.148 4.148 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.254 0.746 36 H 0.094 0.906 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.171 0.829 42 H 0.201 0.799 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 4.828 16.441 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.546 5.546 10 Si 0.733 3.267 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.046 3.954 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.103 0.897 18 N -0.364 5.364 19 C 0.349 3.651 20 O -0.398 6.398 21 C -0.241 4.241 22 C 0.016 3.984 23 N -0.242 5.242 24 C 0.027 3.973 25 N -0.237 5.237 26 C 0.118 3.882 27 C -0.142 4.142 28 C -0.201 4.201 29 C -0.186 4.186 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.227 0.773 41 H 0.188 0.812 42 H 0.217 0.783 43 H 0.171 0.829 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.232 4.344 17.218 21.563 hybrid contribution 0.855 0.737 -1.260 1.692 sum -11.377 5.081 15.958 20.246 Atomic orbital electron populations 1.21780 0.95755 1.01654 1.00844 1.21992 0.94518 1.00678 0.96468 0.90976 1.20884 0.85985 0.96639 0.93702 1.44124 0.99272 1.71396 1.16716 1.19200 0.97499 1.13385 1.08213 0.91524 1.25026 0.99765 0.95533 0.99374 1.70026 1.21235 1.15793 1.47576 0.86276 0.81558 0.78884 0.79954 1.21476 1.21756 1.20459 1.20812 0.99820 0.92987 0.81806 1.22591 0.93608 1.01627 1.00951 1.21143 0.94716 0.96920 0.81704 0.89682 1.46231 1.65548 1.14112 1.10478 1.17692 0.78445 0.86504 0.82412 1.90734 1.49569 1.15389 1.84071 1.21698 1.07960 0.97164 0.97272 1.23476 0.87312 0.90512 0.97075 1.68438 1.16487 1.39305 0.99926 1.25188 0.89753 0.86787 0.95570 1.68263 1.13200 1.10530 1.31672 1.21033 0.85717 0.94834 0.86580 1.21416 1.04146 0.90287 0.98364 1.23029 0.99908 1.01102 0.96077 1.22898 0.90464 1.03387 1.01825 0.93597 0.92619 0.92817 0.96135 0.92334 0.93559 0.88797 0.96167 0.92648 0.92692 0.77333 0.81180 0.78280 0.82932 0.87634 0.88338 0.87717 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.03 37.16 0.34 -1.42 16 2 C -0.12 -1.79 2.46 -90.50 -0.22 -2.01 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.16 3.05 5.80 -3.71 -0.02 3.03 16 5 N -0.59 -14.31 3.00 -172.33 -0.52 -14.83 16 6 C -0.25 -6.76 9.60 -15.06 -0.14 -6.90 16 7 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 8 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 9 N -0.90 -25.86 11.06 55.49 0.61 -25.24 16 10 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.17 4.05 5.32 -3.72 -0.02 4.03 16 15 C -0.15 -2.80 5.65 -26.61 -0.15 -2.95 16 16 C 0.16 2.55 1.88 -67.89 -0.13 2.42 16 17 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 18 N -0.71 -9.15 4.32 -54.71 -0.24 -9.39 16 19 C 0.56 7.85 7.73 -12.34 -0.10 7.75 16 20 O -0.52 -8.75 13.16 5.31 0.07 -8.68 16 21 C -0.23 -2.79 5.91 -104.69 -0.62 -3.41 16 22 C 0.18 1.82 10.81 -16.78 -0.18 1.64 16 23 N -0.53 -5.41 10.42 -14.24 -0.15 -5.55 16 24 C 0.31 2.96 12.27 -92.03 -1.13 1.83 16 25 N -0.52 -5.81 9.44 -10.48 -0.10 -5.91 16 26 C 0.26 3.24 6.53 -81.82 -0.53 2.71 16 27 C -0.12 -1.49 4.83 -91.78 -0.44 -1.93 16 28 C -0.16 -1.60 10.05 -26.69 -0.27 -1.87 16 29 C -0.15 -1.58 10.24 -26.69 -0.27 -1.86 16 30 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.09 2.50 5.92 -51.93 -0.31 2.19 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.39 3.91 6.45 -40.82 -0.26 3.65 16 41 H 0.17 1.20 6.54 -52.49 -0.34 0.86 16 42 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.15 2.08 6.00 -51.93 -0.31 1.76 16 44 H 0.11 1.02 7.58 -51.93 -0.39 0.63 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -31.00 376.37 -10.66 -41.66 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.01 Total: 4.92 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.98 Total: 1.02 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.39 Total: -60.92 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.00 -10.66 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944553179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.162 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds