Wall clock time and date at job start Tue Mar 31 2020 17:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52267 * 2 1 4 4 C 1.53188 * 109.49735 * 239.91600 * 2 1 3 5 5 N 1.46929 * 108.77654 * 185.41664 * 4 2 1 6 6 C 1.36935 * 120.63003 * 233.59160 * 5 4 2 7 7 H 1.08004 * 120.00298 * 26.47923 * 6 5 4 8 8 C 1.38812 * 119.99998 * 206.47569 * 6 5 4 9 9 N 1.31622 * 119.99639 * 16.79636 * 8 6 5 10 10 Si 1.86797 * 120.00193 * 196.79125 * 8 6 5 11 11 H 1.48505 * 109.47320 * 90.00373 * 10 8 6 12 12 H 1.48501 * 109.47483 * 210.00017 * 10 8 6 13 13 H 1.48497 * 109.47613 * 330.00449 * 10 8 6 14 14 C 1.46920 * 118.73945 * 53.60258 * 5 4 2 15 15 C 1.53189 * 108.78239 * 306.40009 * 14 5 4 16 16 C 1.53038 * 109.31281 * 54.62834 * 15 14 5 17 17 H 1.09003 * 109.45940 * 58.66059 * 16 15 14 18 18 N 1.46501 * 109.46345 * 178.61710 * 16 15 14 19 19 C 1.34771 * 120.00191 * 275.07525 * 18 16 15 20 20 O 1.21560 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.47834 * 120.00101 * 180.02562 * 19 18 16 22 22 C 1.39963 * 120.93841 * 2.05124 * 21 19 18 23 23 N 1.32135 * 118.92407 * 179.69917 * 22 21 19 24 24 C 1.31889 * 120.95961 * 0.61427 * 23 22 21 25 25 N 1.31845 * 122.09857 * 359.66167 * 24 23 22 26 26 C 1.32167 * 120.97214 * 0.02562 * 25 24 23 27 27 C 1.50693 * 120.53970 * 180.02562 * 26 25 24 28 28 C 1.53001 * 117.50250 * 358.61045 * 27 26 25 29 29 C 1.52995 * 117.50184 * 289.94544 * 27 26 25 30 30 H 1.08998 * 109.47404 * 299.92367 * 1 2 3 31 31 H 1.09004 * 109.47069 * 59.91868 * 1 2 3 32 32 H 1.09004 * 109.47373 * 179.91761 * 1 2 3 33 33 H 1.08996 * 109.59196 * 305.20210 * 4 2 1 34 34 H 1.09003 * 109.58454 * 65.63126 * 4 2 1 35 35 H 0.97003 * 119.99181 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.58887 * 186.60629 * 14 5 4 37 37 H 1.09005 * 109.58283 * 66.18379 * 14 5 4 38 38 H 1.09003 * 109.49579 * 294.68214 * 15 14 5 39 39 H 1.09001 * 109.50059 * 174.58399 * 15 14 5 40 40 H 0.97000 * 119.99705 * 95.06657 * 18 16 15 41 41 H 1.07999 * 120.53970 * 0.02562 * 22 21 19 42 42 H 1.08005 * 118.94449 * 179.68067 * 24 23 22 43 43 H 1.09003 * 115.54855 * 144.27365 * 27 26 25 44 44 H 1.09000 * 117.49401 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50346 * 145.01520 * 28 27 26 46 46 H 1.08999 * 117.50229 * 214.97937 * 29 27 26 47 47 H 1.08997 * 117.49845 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1695 6 6 4.2936 -0.3794 -2.1943 7 1 3.9387 0.4071 -2.8439 8 6 5.5495 -0.9342 -2.3983 9 7 5.8568 -2.0884 -1.8452 10 14 6.8034 -0.0430 -3.4579 11 1 7.6157 0.8634 -2.6070 12 1 7.6927 -1.0355 -4.1132 13 1 6.0990 0.7518 -4.4959 14 6 4.1052 -1.4267 0.0309 15 6 3.5708 -0.6951 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6966 -1.7573 1.2354 18 7 1.5264 -0.0529 2.4453 19 6 1.3984 -0.7381 3.5988 20 8 1.7093 -1.9124 3.6459 21 6 0.8788 -0.0620 4.8064 22 6 0.4740 1.2771 4.7634 23 7 0.0101 1.8402 5.8651 24 6 -0.0625 1.1629 6.9945 25 7 0.3131 -0.0980 7.0806 26 6 0.7836 -0.7411 6.0262 27 6 1.2096 -2.1824 6.1356 28 6 1.1054 -2.8476 7.5094 29 6 2.4777 -2.4855 6.9360 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.6053 -1.7216 -1.2980 34 1 1.7638 -0.1579 -2.1388 35 1 6.7344 -2.4762 -1.9881 36 1 5.1895 -1.3246 -0.0136 37 1 3.8374 -2.4818 0.0869 38 1 3.9158 0.3389 1.2542 39 1 3.9334 -1.1897 2.1672 40 1 1.2781 0.8840 2.4076 41 1 0.5348 1.8395 3.8434 42 1 -0.4422 1.6569 7.8767 43 1 1.0070 -2.8002 5.2607 44 1 0.7291 -2.2426 8.3343 45 1 0.8347 -3.9031 7.5384 46 1 3.1093 -3.3029 6.5880 47 1 3.0037 -1.6424 7.3839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944553179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:49 Heat of formation + Delta-G solvation = 42.779917 kcal Electronic energy + Delta-G solvation = -28624.654562 eV Core-core repulsion = 24808.230618 eV Total energy + Delta-G solvation = -3816.423944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.47411 -40.84583 -39.16831 -38.19665 -36.22402 -34.70944 -34.17998 -33.26816 -32.88890 -31.42284 -27.41288 -27.35909 -26.35972 -25.96839 -23.88373 -23.25016 -22.66878 -22.39454 -21.74689 -20.98064 -18.95251 -18.91300 -18.47891 -18.00155 -17.01316 -16.71095 -16.60297 -16.16090 -15.83853 -15.61686 -15.51404 -15.22147 -15.07141 -14.80380 -14.52721 -14.46746 -14.22939 -13.58867 -13.11476 -13.06511 -13.00474 -12.77966 -12.71217 -12.58426 -12.50868 -12.36993 -12.30065 -12.05627 -12.01311 -11.67762 -11.58836 -11.56810 -11.34106 -11.22073 -10.68610 -10.58238 -10.54413 -10.40041 -10.00193 -8.72440 -7.86594 -5.32014 -0.67008 -0.14773 1.47957 1.49309 1.58070 1.75839 1.98352 2.51689 2.56720 2.81227 2.94678 3.03137 3.27107 3.28668 3.54615 3.64731 3.71749 3.79160 3.98046 4.03416 4.06297 4.10196 4.17218 4.32215 4.39668 4.61474 4.64952 4.72423 4.73499 4.75948 4.86191 4.90933 4.93362 5.03256 5.08545 5.13947 5.15388 5.20360 5.28635 5.31484 5.40984 5.52205 5.53960 5.63987 5.72593 5.77114 6.38248 6.46433 6.89390 7.13726 7.14217 7.85084 8.36328 9.19860 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.002909 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.657459 B = 9624.563324 C =10303.282178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.610 5.610 6 C -0.259 4.259 7 H 0.074 0.926 8 C -0.055 4.055 9 N -0.938 5.938 10 Si 0.968 3.032 11 H -0.286 1.286 12 H -0.299 1.299 13 H -0.265 1.265 14 C 0.181 3.819 15 C -0.132 4.132 16 C 0.172 3.828 17 H 0.062 0.938 18 N -0.699 5.699 19 C 0.567 3.433 20 O -0.556 6.556 21 C -0.250 4.250 22 C 0.195 3.805 23 N -0.535 5.535 24 C 0.318 3.682 25 N -0.532 5.532 26 C 0.255 3.745 27 C -0.142 4.142 28 C -0.144 4.144 29 C -0.150 4.150 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.010 0.990 34 H 0.065 0.935 35 H 0.249 0.751 36 H 0.059 0.941 37 H -0.011 1.011 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.411 0.589 41 H 0.201 0.799 42 H 0.236 0.764 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 7.624 17.492 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.333 5.333 6 C -0.389 4.389 7 H 0.092 0.908 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.796 3.204 11 H -0.213 1.213 12 H -0.226 1.226 13 H -0.190 1.190 14 C 0.055 3.945 15 C -0.172 4.172 16 C 0.068 3.932 17 H 0.080 0.920 18 N -0.351 5.351 19 C 0.353 3.647 20 O -0.435 6.435 21 C -0.257 4.257 22 C 0.028 3.972 23 N -0.248 5.248 24 C 0.032 3.968 25 N -0.246 5.246 26 C 0.109 3.891 27 C -0.161 4.161 28 C -0.181 4.181 29 C -0.188 4.188 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.007 0.993 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.249 0.751 41 H 0.218 0.782 42 H 0.252 0.748 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.183 7.189 18.285 24.232 hybrid contribution 1.388 -0.154 -1.539 2.078 sum -12.795 7.035 16.746 22.218 Atomic orbital electron populations 1.21728 0.92690 1.01920 1.02935 1.21781 0.96850 1.00026 0.93477 0.89957 1.21081 0.83391 0.96815 0.96354 1.44368 1.01167 1.71344 1.16388 1.19583 0.97929 1.13051 1.08306 0.90818 1.25810 1.01717 0.96237 1.01215 1.70202 1.21234 1.17466 1.49551 0.85250 0.79029 0.77522 0.78554 1.21313 1.22552 1.18985 1.20509 0.97976 0.92021 0.84028 1.22326 0.95948 1.00837 0.98084 1.20706 0.92473 0.96438 0.83600 0.91971 1.45867 1.65181 1.14848 1.09163 1.17990 0.77657 0.86088 0.82964 1.90737 1.51010 1.17101 1.84634 1.21494 1.09882 0.98175 0.96181 1.23918 0.85537 0.89565 0.98151 1.68571 1.16835 1.39235 1.00188 1.25968 0.88075 0.86203 0.96518 1.68326 1.13771 1.11356 1.31177 1.21111 0.85831 0.94942 0.87203 1.21325 1.05407 0.90693 0.98660 1.23074 0.98589 1.01720 0.94741 1.22916 0.90691 1.03424 1.01813 0.90911 0.91140 0.93522 0.97171 0.91674 0.94228 0.92305 0.99299 0.92085 0.93356 0.75130 0.78227 0.74768 0.85039 0.87178 0.87020 0.87787 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.03 71.98 0.65 -2.26 16 2 C -0.10 -2.92 2.46 -10.72 -0.03 -2.95 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.15 5.82 5.80 86.36 0.50 6.32 16 5 N -0.61 -29.98 3.00 -699.12 -2.10 -32.07 16 6 C -0.26 -13.90 9.60 84.03 0.81 -13.09 16 7 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 8 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 9 N -0.94 -56.02 11.06 21.65 0.24 -55.78 16 10 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 C 0.18 8.94 5.32 86.36 0.46 9.40 16 15 C -0.13 -5.08 5.65 30.67 0.17 -4.91 16 16 C 0.17 5.45 1.88 45.02 0.08 5.53 16 17 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16 18 N -0.70 -16.63 4.32 -445.28 -1.92 -18.55 16 19 C 0.57 15.30 7.73 86.78 0.67 15.97 16 20 O -0.56 -19.14 13.16 -3.90 -0.05 -19.19 16 21 C -0.25 -5.57 5.91 -19.91 -0.12 -5.69 16 22 C 0.20 3.28 10.81 85.07 0.92 4.20 16 23 N -0.53 -9.16 10.42 -198.98 -2.07 -11.24 16 24 C 0.32 5.03 12.27 180.84 2.22 7.25 16 25 N -0.53 -10.75 9.44 -187.07 -1.77 -12.52 16 26 C 0.25 5.98 6.53 42.92 0.28 6.26 16 27 C -0.14 -3.42 4.83 -11.54 -0.06 -3.48 16 28 C -0.14 -2.70 10.05 30.62 0.31 -2.40 16 29 C -0.15 -3.22 10.24 30.62 0.31 -2.91 16 30 H 0.07 1.21 7.36 -2.39 -0.02 1.19 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 35 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.06 3.31 5.92 -2.39 -0.01 3.29 16 37 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.41 6.74 6.45 -92.71 -0.60 6.14 16 41 H 0.20 1.94 6.54 -2.91 -0.02 1.93 16 42 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 3.75 6.00 -2.39 -0.01 3.73 16 44 H 0.11 1.97 7.58 -2.39 -0.02 1.96 16 45 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -70.33 376.37 2.35 -67.98 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.39 Total: 20.18 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 7.61 Total: 14.62 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -7.62 Total: -130.16 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.33 2.35 -67.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944553179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.762 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds