Wall clock time and date at job start Tue Mar 31 2020 17:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52275 * 2 1 4 4 C 1.53196 * 109.49707 * 120.07257 * 2 1 3 5 5 N 1.46923 * 108.77671 * 174.58913 * 4 2 1 6 6 C 1.36928 * 120.63255 * 126.41558 * 5 4 2 7 7 H 1.08001 * 120.00581 * 211.67350 * 6 5 4 8 8 C 1.38812 * 120.00057 * 31.67767 * 6 5 4 9 9 N 1.31620 * 119.99912 * 13.67824 * 8 6 5 10 10 Si 1.86797 * 120.00184 * 193.68182 * 8 6 5 11 11 H 1.48503 * 109.47431 * 59.99838 * 10 8 6 12 12 H 1.48504 * 109.47061 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47411 * 299.99624 * 10 8 6 14 14 C 1.46928 * 118.73714 * 306.39316 * 5 4 2 15 15 C 1.53191 * 108.77723 * 53.61037 * 14 5 4 16 16 C 1.53038 * 109.50061 * 239.91265 * 2 1 3 17 17 H 1.09004 * 109.44745 * 58.67009 * 16 2 1 18 18 N 1.46494 * 109.46028 * 298.70590 * 16 2 1 19 19 C 1.34781 * 120.00025 * 154.93031 * 18 16 2 20 20 O 1.21554 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.47829 * 119.99883 * 179.71883 * 19 18 16 22 22 C 1.39970 * 120.94081 * 354.09514 * 21 19 18 23 23 N 1.32136 * 118.92195 * 179.97438 * 22 21 19 24 24 C 1.31886 * 120.96522 * 359.97438 * 23 22 21 25 25 N 1.31847 * 122.09922 * 359.97438 * 24 23 22 26 26 C 1.32163 * 120.96720 * 359.74628 * 25 24 23 27 27 C 1.50705 * 120.54211 * 180.28567 * 26 25 24 28 28 C 1.53004 * 117.49257 * 357.34290 * 27 26 25 29 29 C 1.52999 * 117.49781 * 288.72203 * 27 26 25 30 30 H 1.09003 * 109.47013 * 180.08229 * 1 2 3 31 31 H 1.08999 * 109.47417 * 300.08213 * 1 2 3 32 32 H 1.08998 * 109.47120 * 60.08621 * 1 2 3 33 33 H 1.09005 * 109.58257 * 54.80504 * 4 2 1 34 34 H 1.09000 * 109.58740 * 294.37817 * 4 2 1 35 35 H 0.97004 * 120.00339 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.59136 * 293.82222 * 14 5 4 37 37 H 1.09000 * 109.58651 * 173.39449 * 14 5 4 38 38 H 1.09000 * 109.50050 * 185.41138 * 15 14 5 39 39 H 1.08999 * 109.49770 * 65.31368 * 15 14 5 40 40 H 0.97005 * 120.00253 * 334.92819 * 18 16 2 41 41 H 1.07999 * 120.53874 * 359.97438 * 22 21 19 42 42 H 1.08003 * 118.94718 * 180.02562 * 24 23 22 43 43 H 1.09000 * 115.54943 * 143.04508 * 27 26 25 44 44 H 1.08996 * 117.49960 * 359.97438 * 28 27 26 45 45 H 1.09000 * 117.49417 * 145.02158 * 28 27 26 46 46 H 1.09000 * 117.49981 * 214.97113 * 29 27 26 47 47 H 1.09001 * 117.50086 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8289 1.1698 6 6 4.2935 -0.3790 2.1946 7 1 5.2748 0.0206 1.9854 8 6 3.8320 -0.4366 3.5025 9 7 2.7698 -1.1570 3.7945 10 14 4.7183 0.5084 4.8481 11 1 4.7046 1.9581 4.5264 12 1 4.0317 0.2833 6.1456 13 1 6.1229 0.0355 4.9423 14 6 4.1053 -1.4266 -0.0305 15 6 3.5710 -0.6951 -1.2658 16 6 2.0409 -0.7232 -1.2482 17 1 1.6582 -0.2245 -2.1387 18 7 1.5784 -2.1131 -1.2306 19 6 1.4490 -2.7950 -2.3859 20 8 1.7165 -2.2569 -3.4425 21 6 0.9883 -4.1996 -2.3676 22 6 0.7986 -4.8790 -1.1586 23 7 0.3852 -6.1337 -1.1888 24 6 0.1520 -6.7440 -2.3344 25 7 0.3168 -6.1414 -3.4955 26 6 0.7222 -4.8850 -3.5582 27 6 0.9012 -4.2036 -4.8904 28 6 0.6569 -5.0383 -6.1492 29 6 2.0825 -4.6451 -5.7567 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.6053 -1.7215 1.2982 34 1 1.7637 -0.1577 2.1390 35 1 2.4475 -1.1976 4.7085 36 1 3.8376 -2.4817 -0.0864 37 1 5.1896 -1.3245 0.0140 38 1 3.9336 -1.1898 -2.1668 39 1 3.9160 0.3388 -1.2540 40 1 1.3653 -2.5428 -0.3874 41 1 0.9870 -4.3858 -0.2165 42 1 -0.1853 -7.7699 -2.3210 43 1 0.6198 -3.1510 -4.9216 44 1 0.3672 -6.0803 -6.0137 45 1 0.2147 -4.5348 -7.0089 46 1 2.5781 -3.8830 -6.3582 47 1 2.7305 -5.4281 -5.3629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944553182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:00 Heat of formation + Delta-G solvation = 59.698599 kcal Electronic energy + Delta-G solvation = -29180.726523 eV Core-core repulsion = 25365.036228 eV Total energy + Delta-G solvation = -3815.690295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.49323 -39.70674 -37.79237 -37.18899 -34.33231 -33.61632 -32.74182 -31.99049 -31.63161 -29.56126 -26.15402 -25.70396 -25.41294 -24.87641 -22.47997 -22.24029 -21.48404 -21.13123 -20.79960 -18.75281 -17.90925 -17.78283 -17.08382 -16.67063 -15.75480 -15.35308 -15.13017 -14.85177 -14.66945 -14.25895 -14.19406 -13.97869 -13.68917 -13.58863 -13.27095 -13.07861 -12.69705 -12.18751 -12.06777 -11.77999 -11.63906 -11.53602 -11.46399 -11.26556 -11.08959 -10.98768 -10.76089 -10.64247 -10.47669 -10.38789 -10.21250 -10.02700 -9.85859 -9.64264 -9.53020 -9.49416 -9.43835 -8.72360 -8.53825 -6.69404 -5.86870 -3.33403 0.30545 0.81082 2.87683 3.24192 3.34008 3.39770 3.40961 3.51225 3.72235 3.86669 3.89748 4.19453 4.43220 4.60909 4.73152 4.90049 4.94166 4.98481 5.15481 5.23352 5.26035 5.37706 5.49882 5.56677 5.59820 5.60190 5.75391 5.77290 6.01012 6.02081 6.05759 6.08600 6.12622 6.16356 6.27135 6.39320 6.46726 6.47977 6.57695 6.72004 6.73444 6.85188 6.92343 7.19949 7.49696 7.65655 7.73894 7.82498 8.29505 8.39777 9.14202 9.75606 10.33884 11.21578 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.003283 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.644831 B = 8527.973689 C = 9073.260411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 H 0.080 0.920 4 C 0.181 3.819 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.063 0.937 8 C 0.007 3.993 9 N -0.903 5.903 10 Si 0.903 3.097 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.703 5.703 19 C 0.566 3.434 20 O -0.531 6.531 21 C -0.233 4.233 22 C 0.187 3.813 23 N -0.524 5.524 24 C 0.313 3.687 25 N -0.525 5.525 26 C 0.261 3.739 27 C -0.113 4.113 28 C -0.166 4.166 29 C -0.146 4.146 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.088 0.912 35 H 0.255 0.745 36 H 0.015 0.985 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.174 0.826 42 H 0.200 0.800 43 H 0.145 0.855 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -6.277 -14.407 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 H 0.098 0.902 4 C 0.055 3.945 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.081 0.919 8 C -0.192 4.192 9 N -0.547 5.547 10 Si 0.733 3.267 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.058 3.942 17 H 0.094 0.906 18 N -0.354 5.354 19 C 0.351 3.649 20 O -0.410 6.410 21 C -0.241 4.241 22 C 0.021 3.979 23 N -0.238 5.238 24 C 0.026 3.974 25 N -0.239 5.239 26 C 0.114 3.886 27 C -0.132 4.132 28 C -0.203 4.203 29 C -0.184 4.184 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.191 0.809 42 H 0.217 0.783 43 H 0.163 0.837 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.711 -6.863 -14.920 17.741 hybrid contribution 0.611 0.991 1.441 1.852 sum -6.099 -5.873 -13.479 15.918 Atomic orbital electron populations 1.21727 0.95834 1.01167 1.00995 1.22163 0.94749 1.00897 0.97178 0.90168 1.20748 0.83375 0.96352 0.94071 1.43995 1.01480 1.69496 1.16333 1.19110 0.99930 1.34364 0.85186 0.91898 1.25127 0.98340 0.98411 0.97285 1.69964 1.25798 1.40131 1.18776 0.86366 0.79194 0.79972 0.81163 1.20967 1.21612 1.20853 1.20871 0.96633 0.93966 0.86427 1.22390 0.94870 1.01841 0.99469 1.20948 0.94442 0.80051 0.98768 0.90593 1.46103 1.66349 1.14608 1.08360 1.17676 0.78100 0.84595 0.84549 1.90715 1.50582 1.69598 1.30089 1.21669 1.08461 0.98022 0.95912 1.23607 0.86949 0.89646 0.97727 1.68465 1.14134 1.10123 1.31058 1.25193 0.89524 1.00185 0.82478 1.68243 1.15456 1.09825 1.30334 1.20971 0.85516 0.88222 0.93850 1.21182 1.06030 1.00001 0.85997 1.23029 0.98874 1.01389 0.97031 1.22855 0.91058 1.02937 1.01596 0.93314 0.92509 0.93623 0.96781 0.89400 0.93508 0.96700 0.92860 0.92471 0.91299 0.76153 0.80880 0.78312 0.83746 0.87598 0.88479 0.87931 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.05 37.16 0.34 -1.68 16 2 C -0.13 -2.18 2.67 -90.50 -0.24 -2.43 16 3 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.18 3.82 4.25 -3.71 -0.02 3.80 16 5 N -0.59 -13.70 2.98 -172.32 -0.51 -14.21 16 6 C -0.26 -6.70 9.56 -15.06 -0.14 -6.84 16 7 H 0.06 1.64 7.87 -52.49 -0.41 1.22 16 8 C 0.01 0.20 4.97 -17.43 -0.09 0.11 16 9 N -0.90 -24.72 11.26 55.49 0.62 -24.09 16 10 Si 0.90 20.97 29.57 -169.99 -5.03 15.95 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.15 2.95 6.26 -3.71 -0.02 2.93 16 15 C -0.15 -2.49 5.77 -26.61 -0.15 -2.65 16 16 C 0.16 2.58 2.21 -67.89 -0.15 2.43 16 17 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 18 N -0.70 -10.42 3.55 -54.71 -0.19 -10.62 16 19 C 0.57 8.43 7.71 -12.33 -0.10 8.33 16 20 O -0.53 -8.79 13.30 5.32 0.07 -8.72 16 21 C -0.23 -3.17 5.91 -104.69 -0.62 -3.78 16 22 C 0.19 2.40 10.80 -16.77 -0.18 2.22 16 23 N -0.52 -6.64 10.42 -14.24 -0.15 -6.79 16 24 C 0.31 3.47 12.27 -92.03 -1.13 2.34 16 25 N -0.52 -6.41 9.45 -10.48 -0.10 -6.51 16 26 C 0.26 3.44 6.53 -81.81 -0.53 2.90 16 27 C -0.11 -1.38 4.64 -91.77 -0.43 -1.81 16 28 C -0.17 -1.64 10.04 -26.73 -0.27 -1.91 16 29 C -0.15 -1.57 10.23 -26.73 -0.27 -1.85 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.01 0.31 6.64 -51.93 -0.34 -0.04 16 34 H 0.09 2.15 6.23 -51.93 -0.32 1.82 16 35 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.02 0.30 7.74 -51.93 -0.40 -0.10 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.40 5.88 4.90 -40.82 -0.20 5.68 16 41 H 0.17 2.03 6.58 -52.49 -0.35 1.69 16 42 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.15 1.92 6.35 -51.93 -0.33 1.59 16 44 H 0.11 1.06 7.58 -51.93 -0.39 0.67 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -29.12 373.18 -10.56 -39.67 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.89 Total: 7.57 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -4.00 Total: 2.13 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.33 Total: -62.22 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.12 -10.56 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944553182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.370 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds