Wall clock time and date at job start Tue Mar 31 2020 17:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52275 * 2 1 4 4 C 1.53196 * 109.49707 * 120.07257 * 2 1 3 5 5 N 1.46923 * 108.77671 * 174.58913 * 4 2 1 6 6 C 1.36928 * 120.63255 * 126.41558 * 5 4 2 7 7 H 1.08001 * 120.00581 * 211.67350 * 6 5 4 8 8 C 1.38812 * 120.00057 * 31.67767 * 6 5 4 9 9 N 1.31620 * 119.99912 * 13.67824 * 8 6 5 10 10 Si 1.86797 * 120.00184 * 193.68182 * 8 6 5 11 11 H 1.48503 * 109.47431 * 59.99838 * 10 8 6 12 12 H 1.48504 * 109.47061 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47411 * 299.99624 * 10 8 6 14 14 C 1.46928 * 118.73714 * 306.39316 * 5 4 2 15 15 C 1.53191 * 108.77723 * 53.61037 * 14 5 4 16 16 C 1.53038 * 109.50061 * 239.91265 * 2 1 3 17 17 H 1.09004 * 109.44745 * 58.67009 * 16 2 1 18 18 N 1.46494 * 109.46028 * 298.70590 * 16 2 1 19 19 C 1.34781 * 120.00025 * 154.93031 * 18 16 2 20 20 O 1.21554 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.47829 * 119.99883 * 179.71883 * 19 18 16 22 22 C 1.39970 * 120.94081 * 354.09514 * 21 19 18 23 23 N 1.32136 * 118.92195 * 179.97438 * 22 21 19 24 24 C 1.31886 * 120.96522 * 359.97438 * 23 22 21 25 25 N 1.31847 * 122.09922 * 359.97438 * 24 23 22 26 26 C 1.32163 * 120.96720 * 359.74628 * 25 24 23 27 27 C 1.50705 * 120.54211 * 180.28567 * 26 25 24 28 28 C 1.53004 * 117.49257 * 357.34290 * 27 26 25 29 29 C 1.52999 * 117.49781 * 288.72203 * 27 26 25 30 30 H 1.09003 * 109.47013 * 180.08229 * 1 2 3 31 31 H 1.08999 * 109.47417 * 300.08213 * 1 2 3 32 32 H 1.08998 * 109.47120 * 60.08621 * 1 2 3 33 33 H 1.09005 * 109.58257 * 54.80504 * 4 2 1 34 34 H 1.09000 * 109.58740 * 294.37817 * 4 2 1 35 35 H 0.97004 * 120.00339 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.59136 * 293.82222 * 14 5 4 37 37 H 1.09000 * 109.58651 * 173.39449 * 14 5 4 38 38 H 1.09000 * 109.50050 * 185.41138 * 15 14 5 39 39 H 1.08999 * 109.49770 * 65.31368 * 15 14 5 40 40 H 0.97005 * 120.00253 * 334.92819 * 18 16 2 41 41 H 1.07999 * 120.53874 * 359.97438 * 22 21 19 42 42 H 1.08003 * 118.94718 * 180.02562 * 24 23 22 43 43 H 1.09000 * 115.54943 * 143.04508 * 27 26 25 44 44 H 1.08996 * 117.49960 * 359.97438 * 28 27 26 45 45 H 1.09000 * 117.49417 * 145.02158 * 28 27 26 46 46 H 1.09000 * 117.49981 * 214.97113 * 29 27 26 47 47 H 1.09001 * 117.50086 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5046 -0.8289 1.1698 6 6 4.2935 -0.3790 2.1946 7 1 5.2748 0.0206 1.9854 8 6 3.8320 -0.4366 3.5025 9 7 2.7698 -1.1570 3.7945 10 14 4.7183 0.5084 4.8481 11 1 4.7046 1.9581 4.5264 12 1 4.0317 0.2833 6.1456 13 1 6.1229 0.0355 4.9423 14 6 4.1053 -1.4266 -0.0305 15 6 3.5710 -0.6951 -1.2658 16 6 2.0409 -0.7232 -1.2482 17 1 1.6582 -0.2245 -2.1387 18 7 1.5784 -2.1131 -1.2306 19 6 1.4490 -2.7950 -2.3859 20 8 1.7165 -2.2569 -3.4425 21 6 0.9883 -4.1996 -2.3676 22 6 0.7986 -4.8790 -1.1586 23 7 0.3852 -6.1337 -1.1888 24 6 0.1520 -6.7440 -2.3344 25 7 0.3168 -6.1414 -3.4955 26 6 0.7222 -4.8850 -3.5582 27 6 0.9012 -4.2036 -4.8904 28 6 0.6569 -5.0383 -6.1492 29 6 2.0825 -4.6451 -5.7567 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.6053 -1.7215 1.2982 34 1 1.7637 -0.1577 2.1390 35 1 2.4475 -1.1976 4.7085 36 1 3.8376 -2.4817 -0.0864 37 1 5.1896 -1.3245 0.0140 38 1 3.9336 -1.1898 -2.1668 39 1 3.9160 0.3388 -1.2540 40 1 1.3653 -2.5428 -0.3874 41 1 0.9870 -4.3858 -0.2165 42 1 -0.1853 -7.7699 -2.3210 43 1 0.6198 -3.1510 -4.9216 44 1 0.3672 -6.0803 -6.0137 45 1 0.2147 -4.5348 -7.0089 46 1 2.5781 -3.8830 -6.3582 47 1 2.7305 -5.4281 -5.3629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944553182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:59 Heat of formation + Delta-G solvation = 44.980210 kcal Electronic energy + Delta-G solvation = -29181.364760 eV Core-core repulsion = 25365.036228 eV Total energy + Delta-G solvation = -3816.328532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.48402 -40.96643 -39.11681 -38.14756 -35.92653 -34.64385 -33.94357 -33.50667 -32.99297 -31.16202 -27.52786 -27.29570 -26.37665 -26.15973 -23.89864 -23.22889 -22.71134 -22.29800 -22.08209 -20.16517 -19.07700 -18.88886 -18.51619 -17.89489 -16.92471 -16.72952 -16.41415 -16.16078 -15.81127 -15.73302 -15.41845 -15.22779 -15.06770 -14.79573 -14.57539 -14.50564 -14.24864 -13.58297 -13.08843 -13.07547 -12.89628 -12.78484 -12.76173 -12.53358 -12.49252 -12.46866 -12.33098 -12.20769 -11.80938 -11.69170 -11.57386 -11.43238 -11.32322 -11.10780 -10.72416 -10.53983 -10.53519 -10.40480 -9.97138 -8.59215 -7.86269 -5.34899 -0.66915 -0.16637 1.48416 1.49806 1.56037 1.77241 2.06440 2.51782 2.57116 2.81125 2.95984 3.01342 3.28337 3.29533 3.56803 3.68201 3.72147 3.86934 4.00563 4.04721 4.08654 4.13248 4.20114 4.32041 4.36362 4.59698 4.65012 4.68874 4.75450 4.78144 4.86243 4.95991 4.97417 5.03878 5.10117 5.12875 5.17126 5.21566 5.31250 5.32458 5.36777 5.51334 5.58466 5.67324 5.75961 5.77122 6.42903 6.45837 6.88385 7.10687 7.18459 7.86798 8.39606 9.18780 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.003283 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.644831 B = 8527.973689 C = 9073.260411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 H 0.074 0.926 4 C 0.190 3.810 5 N -0.606 5.606 6 C -0.267 4.267 7 H 0.059 0.941 8 C -0.039 4.039 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.149 3.851 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.086 0.914 18 N -0.701 5.701 19 C 0.570 3.430 20 O -0.548 6.548 21 C -0.248 4.248 22 C 0.188 3.812 23 N -0.539 5.539 24 C 0.318 3.682 25 N -0.528 5.528 26 C 0.257 3.743 27 C -0.133 4.133 28 C -0.146 4.146 29 C -0.146 4.146 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.008 0.992 34 H 0.052 0.948 35 H 0.250 0.750 36 H 0.013 0.987 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.178 0.822 42 H 0.238 0.762 43 H 0.132 0.868 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.110 0.890 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -6.773 -15.810 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.092 0.908 4 C 0.064 3.936 5 N -0.330 5.330 6 C -0.398 4.398 7 H 0.077 0.923 8 C -0.235 4.235 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.023 3.977 15 C -0.174 4.174 16 C 0.065 3.935 17 H 0.104 0.896 18 N -0.352 5.352 19 C 0.357 3.643 20 O -0.427 6.427 21 C -0.255 4.255 22 C 0.022 3.978 23 N -0.252 5.252 24 C 0.032 3.968 25 N -0.242 5.242 26 C 0.110 3.890 27 C -0.151 4.151 28 C -0.183 4.183 29 C -0.184 4.184 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.239 0.761 41 H 0.195 0.805 42 H 0.253 0.747 43 H 0.150 0.850 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.279 -7.365 -16.347 19.351 hybrid contribution 0.803 1.066 1.832 2.267 sum -6.477 -6.299 -14.515 17.097 Atomic orbital electron populations 1.21666 0.93668 1.01832 1.01884 1.21957 0.96458 0.99911 0.95389 0.90789 1.20570 0.82467 0.95878 0.94643 1.44213 1.02190 1.69951 1.16605 1.19369 1.00160 1.34018 0.86220 0.92328 1.25759 0.99261 0.99466 0.99062 1.70096 1.26990 1.41401 1.18687 0.85449 0.78126 0.78881 0.78562 1.20539 1.21977 1.20545 1.20909 0.96221 0.94066 0.86500 1.22245 0.95716 1.01417 0.97996 1.20803 0.93524 0.80720 0.98409 0.89619 1.46020 1.66454 1.14176 1.08554 1.17804 0.77499 0.84995 0.84051 1.90706 1.51351 1.70108 1.30556 1.21545 1.10043 0.97425 0.96517 1.23703 0.86513 0.89901 0.97726 1.68538 1.14802 1.10009 1.31884 1.25975 0.87842 1.01338 0.81687 1.68337 1.15740 1.09392 1.30756 1.21195 0.85027 0.88648 0.94107 1.21150 1.07720 0.99732 0.86541 1.23089 0.97889 1.01109 0.96193 1.22903 0.91326 1.02960 1.01210 0.92787 0.92704 0.91629 0.97431 0.92927 0.94039 0.96887 0.93614 0.91755 0.91244 0.76061 0.80483 0.74654 0.85010 0.87543 0.86627 0.87176 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.05 71.98 0.65 -3.01 16 2 C -0.12 -3.87 2.67 -10.71 -0.03 -3.90 16 3 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.19 8.13 4.25 86.36 0.37 8.50 16 5 N -0.61 -28.46 2.98 -699.10 -2.08 -30.54 16 6 C -0.27 -14.15 9.56 84.03 0.80 -13.35 16 7 H 0.06 3.09 7.87 -2.91 -0.02 3.06 16 8 C -0.04 -2.09 4.97 84.86 0.42 -1.66 16 9 N -0.93 -51.70 11.26 21.65 0.24 -51.46 16 10 Si 0.96 43.54 29.57 68.60 2.03 45.57 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.15 5.95 6.26 86.36 0.54 6.49 16 15 C -0.13 -4.47 5.77 30.67 0.18 -4.29 16 16 C 0.17 5.23 2.21 45.02 0.10 5.33 16 17 H 0.09 2.56 7.58 -2.39 -0.02 2.55 16 18 N -0.70 -20.23 3.55 -445.29 -1.58 -21.81 16 19 C 0.57 16.52 7.71 86.78 0.67 17.19 16 20 O -0.55 -17.58 13.30 -3.89 -0.05 -17.63 16 21 C -0.25 -6.54 5.91 -19.91 -0.12 -6.65 16 22 C 0.19 4.69 10.80 85.07 0.92 5.61 16 23 N -0.54 -12.90 10.42 -198.97 -2.07 -14.97 16 24 C 0.32 6.37 12.27 180.84 2.22 8.59 16 25 N -0.53 -11.98 9.45 -187.05 -1.77 -13.74 16 26 C 0.26 6.47 6.53 42.92 0.28 6.75 16 27 C -0.13 -3.07 4.64 -11.54 -0.05 -3.13 16 28 C -0.15 -2.58 10.04 30.60 0.31 -2.27 16 29 C -0.15 -2.93 10.23 30.60 0.31 -2.61 16 30 H 0.05 1.43 7.54 -2.39 -0.02 1.41 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.01 0.34 6.64 -2.38 -0.02 0.32 16 34 H 0.05 2.63 6.23 -2.39 -0.01 2.62 16 35 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.01 0.53 7.74 -2.39 -0.02 0.51 16 37 H 0.05 1.86 7.93 -2.39 -0.02 1.85 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.40 11.63 4.90 -92.70 -0.45 11.18 16 41 H 0.18 4.12 6.58 -2.91 -0.02 4.10 16 42 H 0.24 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.13 3.41 6.35 -2.39 -0.02 3.39 16 44 H 0.11 1.89 7.58 -2.39 -0.02 1.88 16 45 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -62.08 373.18 2.82 -59.26 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.54 Total: 27.73 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 7.57 Total: 17.59 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -7.26 Total: -132.52 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.08 2.82 -59.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944553182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.240 kcal (2) G-P(sol) polarization free energy of solvation -62.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds