Wall clock time and date at job start Tue Mar 31 2020 17:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.58516 * 2 1 4 4 C 1.53188 * 109.58865 * 120.44004 * 2 1 3 5 5 C 1.53045 * 109.31474 * 174.43489 * 4 2 1 6 6 H 1.08994 * 109.45724 * 58.63368 * 5 4 2 7 7 N 1.46499 * 109.45847 * 178.60219 * 5 4 2 8 8 C 1.34780 * 119.99834 * 205.02446 * 7 5 4 9 9 O 1.21282 * 119.99756 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99812 * 180.02562 * 8 7 5 11 11 C 1.53006 * 109.46950 * 60.00773 * 10 8 7 12 12 C 1.52999 * 109.47069 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46957 * 300.00070 * 12 11 10 14 14 F 1.39906 * 109.47100 * 179.97438 * 13 12 11 15 15 F 1.39894 * 109.47110 * 299.99577 * 13 12 11 16 16 C 1.52999 * 109.47726 * 59.99913 * 13 12 11 17 17 C 1.52999 * 109.46974 * 300.00077 * 16 13 12 18 18 C 1.53035 * 109.52678 * 298.61754 * 5 4 2 19 19 C 1.53190 * 109.31211 * 61.37287 * 18 5 4 20 20 N 1.46925 * 108.77699 * 305.36215 * 19 18 5 21 21 C 1.36943 * 120.63341 * 233.59115 * 20 19 18 22 22 H 1.07997 * 119.99786 * 151.56124 * 21 20 19 23 23 C 1.38810 * 119.99504 * 331.56148 * 21 20 19 24 24 N 1.31618 * 119.99533 * 160.53561 * 23 21 20 25 25 Si 1.86799 * 120.00312 * 340.53205 * 23 21 20 26 26 H 1.48489 * 109.47132 * 94.84485 * 25 23 21 27 27 H 1.48501 * 109.46968 * 214.84409 * 25 23 21 28 28 H 1.48506 * 109.46932 * 334.84058 * 25 23 21 29 29 H 1.08997 * 109.47125 * 180.28257 * 1 2 3 30 30 H 1.09003 * 109.47414 * 300.27748 * 1 2 3 31 31 H 1.09006 * 109.47687 * 60.27711 * 1 2 3 32 32 H 1.09003 * 109.50495 * 54.47849 * 4 2 1 33 33 H 1.08995 * 109.49183 * 294.38626 * 4 2 1 34 34 H 0.96998 * 119.99887 * 25.03597 * 7 5 4 35 35 H 1.08995 * 109.47471 * 300.00705 * 10 8 7 36 36 H 1.08995 * 109.47089 * 59.99699 * 11 10 8 37 37 H 1.09000 * 109.46935 * 299.99835 * 11 10 8 38 38 H 1.08994 * 109.47495 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47014 * 59.99707 * 12 11 10 40 40 H 1.09002 * 109.47100 * 59.99840 * 16 13 12 41 41 H 1.08990 * 109.47456 * 179.97438 * 16 13 12 42 42 H 1.08999 * 109.46929 * 179.97438 * 17 16 13 43 43 H 1.09002 * 109.47014 * 299.99815 * 17 16 13 44 44 H 1.09005 * 109.49861 * 181.31991 * 18 5 4 45 45 H 1.09001 * 109.49837 * 301.38784 * 18 5 4 46 46 H 1.09004 * 109.59111 * 65.15035 * 19 18 5 47 47 H 1.09008 * 109.58990 * 185.57695 * 19 18 5 48 48 H 0.97007 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7312 1.2443 5 6 3.5675 -0.8494 1.1690 6 1 4.0059 0.1461 1.0994 7 7 4.0652 -1.5187 2.3734 8 6 5.3292 -1.3050 2.7895 9 8 6.0544 -0.5583 2.1670 10 6 5.8414 -1.9939 4.0281 11 6 5.7668 -3.5101 3.8361 12 6 6.2874 -4.2095 5.0934 13 6 7.7398 -3.7977 5.3417 14 9 8.2156 -4.4368 6.4917 15 9 8.5237 -4.1679 4.2438 16 6 7.8144 -2.2816 5.5337 17 6 7.2939 -1.5821 4.2764 18 6 3.9569 -1.6655 -0.0656 19 6 3.4650 -0.9451 -1.3249 20 7 2.0225 -0.6979 -1.1954 21 6 1.1537 -1.1099 -2.1704 22 1 0.1334 -1.3558 -1.9157 23 6 1.5844 -1.2113 -3.4861 24 7 0.9110 -1.9480 -4.3440 25 14 3.1198 -0.3023 -4.0390 26 1 4.2907 -1.2116 -3.9547 27 1 2.9470 0.1535 -5.4417 28 1 3.3420 0.8740 -3.1602 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5181 0.8875 31 1 -0.3635 0.5095 -0.8925 32 1 1.6031 -1.7273 1.2888 33 1 1.7658 -0.1700 2.1364 34 1 3.4851 -2.1157 2.8713 35 1 5.2303 -1.7055 4.8833 36 1 6.3779 -3.7985 2.9809 37 1 4.7321 -3.8034 3.6587 38 1 6.2339 -5.2896 4.9568 39 1 5.6766 -3.9211 5.9489 40 1 7.2036 -1.9932 6.3892 41 1 8.8490 -1.9883 5.7111 42 1 7.3467 -0.5021 4.4134 43 1 7.9047 -1.8706 3.4209 44 1 5.0412 -1.7693 -0.1060 45 1 3.4988 -2.6529 -0.0084 46 1 3.9903 0.0040 -1.4317 47 1 3.6518 -1.5688 -2.1993 48 1 1.2118 -2.0187 -5.2636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947749922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:09 Heat of formation + Delta-G solvation = -137.123290 kcal Electronic energy + Delta-G solvation = -29704.251486 eV Core-core repulsion = 25429.337167 eV Total energy + Delta-G solvation = -4274.914319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.27238 -47.25864 -40.33017 -38.34303 -37.11230 -34.78900 -32.46844 -31.92881 -31.49367 -30.86223 -29.67863 -26.60803 -24.92831 -23.75209 -23.51987 -22.64205 -21.28107 -20.50574 -20.12233 -19.32674 -17.78646 -17.24779 -17.18737 -16.60746 -16.40505 -16.07382 -15.25866 -15.10805 -14.60490 -14.46673 -14.27858 -14.07985 -13.80569 -13.77258 -13.57752 -13.43922 -13.32848 -13.16495 -12.85144 -12.62927 -12.47650 -12.13257 -11.98624 -11.92252 -11.85133 -11.66345 -11.38324 -11.19338 -11.12927 -11.02373 -10.62525 -10.55127 -10.40735 -10.21224 -10.00420 -9.96261 -9.60391 -9.40152 -8.85710 -8.61546 -6.96469 -5.94053 -3.31423 2.60370 3.13769 3.35250 3.38939 3.50890 3.54032 3.66999 3.94159 3.97278 4.37445 4.47999 4.54430 4.62316 4.66452 4.79899 4.85668 4.91640 5.10380 5.15742 5.22712 5.28423 5.32785 5.34910 5.38013 5.53022 5.57260 5.59936 5.73578 5.74482 5.92552 5.95410 6.01924 6.07956 6.18583 6.23988 6.34189 6.39511 6.47364 6.62249 6.68272 6.78091 6.93598 7.02719 7.54891 7.97076 8.24639 8.34957 8.94012 9.73297 10.10352 11.21454 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002720 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.275710 B =10290.328092 C =10701.688794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.031 0.969 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.082 0.918 7 N -0.723 5.723 8 C 0.516 3.484 9 O -0.537 6.537 10 C -0.112 4.112 11 C -0.112 4.112 12 C -0.155 4.155 13 C 0.286 3.714 14 F -0.204 7.204 15 F -0.197 7.197 16 C -0.157 4.157 17 C -0.100 4.100 18 C -0.140 4.140 19 C 0.130 3.870 20 N -0.603 5.603 21 C -0.259 4.259 22 H 0.092 0.908 23 C 0.024 3.976 24 N -0.910 5.910 25 Si 0.879 3.121 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.396 0.604 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.027 0.973 47 H 0.074 0.926 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -2.204 23.210 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.175 4.175 5 C 0.046 3.954 6 H 0.100 0.900 7 N -0.373 5.373 8 C 0.301 3.699 9 O -0.414 6.414 10 C -0.133 4.133 11 C -0.150 4.150 12 C -0.193 4.193 13 C 0.250 3.750 14 F -0.185 7.185 15 F -0.178 7.178 16 C -0.195 4.195 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.004 3.996 20 N -0.327 5.327 21 C -0.387 4.387 22 H 0.110 0.890 23 C -0.175 4.175 24 N -0.553 5.553 25 Si 0.710 3.290 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.194 1.194 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.092 0.908 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.562 -1.729 22.570 24.573 hybrid contribution 0.790 -0.062 -0.181 0.813 sum 10.351 -1.791 22.390 24.732 Atomic orbital electron populations 1.21807 0.94990 1.01964 1.00604 1.20365 0.93730 0.93344 0.85722 0.95101 1.22375 0.93479 1.02045 0.99592 1.20998 0.94444 0.96629 0.83302 0.89980 1.46290 1.13340 1.48594 1.29067 1.20415 0.81965 0.81726 0.85790 1.90720 1.56201 1.37363 1.57096 1.21440 0.98540 0.95942 0.97383 1.21523 1.03134 0.92590 0.97755 1.22506 0.92893 1.03085 1.00855 1.21155 0.89116 0.92552 0.72214 1.93009 1.90199 1.84229 1.51079 1.93014 1.77131 1.93013 1.54664 1.22552 1.04746 0.91225 1.01014 1.21326 0.94079 1.01382 0.96995 1.22386 1.00026 0.99943 0.95703 1.21304 0.85155 0.97232 0.95949 1.44491 1.01974 1.65766 1.20482 1.18929 0.95495 1.38486 0.85826 0.89033 1.25296 0.97574 0.98752 0.95838 1.69819 1.41276 1.39369 1.04848 0.86993 0.83457 0.81446 0.77114 1.21717 1.23223 1.19386 0.92348 0.94081 0.91545 0.91329 0.92238 0.77014 0.88120 0.90002 0.89679 0.88993 0.88487 0.88690 0.89113 0.89571 0.89917 0.92445 0.91648 0.95477 0.90820 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.15 0.29 -2.07 16 2 C 0.18 3.26 3.50 -67.61 -0.24 3.02 16 3 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 4 C -0.14 -2.00 4.84 -26.61 -0.13 -2.13 16 5 C 0.15 2.30 2.42 -67.89 -0.16 2.13 16 6 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 7 N -0.72 -8.44 4.97 -53.77 -0.27 -8.71 16 8 C 0.52 6.35 7.12 -10.98 -0.08 6.27 16 9 O -0.54 -8.99 15.64 5.56 0.09 -8.90 16 10 C -0.11 -0.90 2.53 -91.77 -0.23 -1.13 16 11 C -0.11 -0.80 4.98 -26.73 -0.13 -0.94 16 12 C -0.16 -0.96 5.45 -26.73 -0.15 -1.11 16 13 C 0.29 2.35 2.10 -26.73 -0.06 2.29 16 14 F -0.20 -1.94 17.06 2.25 0.04 -1.90 16 15 F -0.20 -2.13 16.02 2.25 0.04 -2.09 16 16 C -0.16 -1.06 5.45 -26.73 -0.15 -1.21 16 17 C -0.10 -0.86 4.37 -26.73 -0.12 -0.97 16 18 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 19 C 0.13 2.84 4.19 -3.71 -0.02 2.83 16 20 N -0.60 -13.78 2.76 -164.78 -0.45 -14.23 16 21 C -0.26 -6.95 9.06 -15.06 -0.14 -7.08 16 22 H 0.09 2.57 6.37 -52.49 -0.33 2.24 16 23 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 24 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 25 Si 0.88 22.51 24.35 -169.99 -4.14 18.37 16 26 H -0.29 -7.26 6.72 56.52 0.38 -6.88 16 27 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 28 H -0.27 -6.79 6.44 56.52 0.36 -6.42 16 29 H 0.06 1.05 7.45 -51.93 -0.39 0.67 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.27 7.61 -51.93 -0.40 0.88 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.43 8.02 -40.82 -0.33 3.10 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 37 H 0.08 0.49 7.56 -51.93 -0.39 0.10 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.08 0.88 7.76 -51.93 -0.40 0.48 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.03 0.61 6.95 -51.93 -0.36 0.25 16 47 H 0.07 1.78 4.61 -51.92 -0.24 1.54 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -32.65 367.57 -7.82 -40.47 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.90 Total: 0.43 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.54 Total: -2.17 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.05 Total: -49.75 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.07 Total: -3.99 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.65 -7.82 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947749922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.649 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds