Wall clock time and date at job start Tue Mar 31 2020 17:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.58516 * 2 1 4 4 C 1.53188 * 109.58865 * 120.44004 * 2 1 3 5 5 C 1.53045 * 109.31474 * 174.43489 * 4 2 1 6 6 H 1.08994 * 109.45724 * 58.63368 * 5 4 2 7 7 N 1.46499 * 109.45847 * 178.60219 * 5 4 2 8 8 C 1.34780 * 119.99834 * 205.02446 * 7 5 4 9 9 O 1.21282 * 119.99756 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99812 * 180.02562 * 8 7 5 11 11 C 1.53006 * 109.46950 * 60.00773 * 10 8 7 12 12 C 1.52999 * 109.47069 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46957 * 300.00070 * 12 11 10 14 14 F 1.39906 * 109.47100 * 179.97438 * 13 12 11 15 15 F 1.39894 * 109.47110 * 299.99577 * 13 12 11 16 16 C 1.52999 * 109.47726 * 59.99913 * 13 12 11 17 17 C 1.52999 * 109.46974 * 300.00077 * 16 13 12 18 18 C 1.53035 * 109.52678 * 298.61754 * 5 4 2 19 19 C 1.53190 * 109.31211 * 61.37287 * 18 5 4 20 20 N 1.46925 * 108.77699 * 305.36215 * 19 18 5 21 21 C 1.36943 * 120.63341 * 233.59115 * 20 19 18 22 22 H 1.07997 * 119.99786 * 151.56124 * 21 20 19 23 23 C 1.38810 * 119.99504 * 331.56148 * 21 20 19 24 24 N 1.31618 * 119.99533 * 160.53561 * 23 21 20 25 25 Si 1.86799 * 120.00312 * 340.53205 * 23 21 20 26 26 H 1.48489 * 109.47132 * 94.84485 * 25 23 21 27 27 H 1.48501 * 109.46968 * 214.84409 * 25 23 21 28 28 H 1.48506 * 109.46932 * 334.84058 * 25 23 21 29 29 H 1.08997 * 109.47125 * 180.28257 * 1 2 3 30 30 H 1.09003 * 109.47414 * 300.27748 * 1 2 3 31 31 H 1.09006 * 109.47687 * 60.27711 * 1 2 3 32 32 H 1.09003 * 109.50495 * 54.47849 * 4 2 1 33 33 H 1.08995 * 109.49183 * 294.38626 * 4 2 1 34 34 H 0.96998 * 119.99887 * 25.03597 * 7 5 4 35 35 H 1.08995 * 109.47471 * 300.00705 * 10 8 7 36 36 H 1.08995 * 109.47089 * 59.99699 * 11 10 8 37 37 H 1.09000 * 109.46935 * 299.99835 * 11 10 8 38 38 H 1.08994 * 109.47495 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47014 * 59.99707 * 12 11 10 40 40 H 1.09002 * 109.47100 * 59.99840 * 16 13 12 41 41 H 1.08990 * 109.47456 * 179.97438 * 16 13 12 42 42 H 1.08999 * 109.46929 * 179.97438 * 17 16 13 43 43 H 1.09002 * 109.47014 * 299.99815 * 17 16 13 44 44 H 1.09005 * 109.49861 * 181.31991 * 18 5 4 45 45 H 1.09001 * 109.49837 * 301.38784 * 18 5 4 46 46 H 1.09004 * 109.59111 * 65.15035 * 19 18 5 47 47 H 1.09008 * 109.58990 * 185.57695 * 19 18 5 48 48 H 0.97007 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7312 1.2443 5 6 3.5675 -0.8494 1.1690 6 1 4.0059 0.1461 1.0994 7 7 4.0652 -1.5187 2.3734 8 6 5.3292 -1.3050 2.7895 9 8 6.0544 -0.5583 2.1670 10 6 5.8414 -1.9939 4.0281 11 6 5.7668 -3.5101 3.8361 12 6 6.2874 -4.2095 5.0934 13 6 7.7398 -3.7977 5.3417 14 9 8.2156 -4.4368 6.4917 15 9 8.5237 -4.1679 4.2438 16 6 7.8144 -2.2816 5.5337 17 6 7.2939 -1.5821 4.2764 18 6 3.9569 -1.6655 -0.0656 19 6 3.4650 -0.9451 -1.3249 20 7 2.0225 -0.6979 -1.1954 21 6 1.1537 -1.1099 -2.1704 22 1 0.1334 -1.3558 -1.9157 23 6 1.5844 -1.2113 -3.4861 24 7 0.9110 -1.9480 -4.3440 25 14 3.1198 -0.3023 -4.0390 26 1 4.2907 -1.2116 -3.9547 27 1 2.9470 0.1535 -5.4417 28 1 3.3420 0.8740 -3.1602 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5181 0.8875 31 1 -0.3635 0.5095 -0.8925 32 1 1.6031 -1.7273 1.2888 33 1 1.7658 -0.1700 2.1364 34 1 3.4851 -2.1157 2.8713 35 1 5.2303 -1.7055 4.8833 36 1 6.3779 -3.7985 2.9809 37 1 4.7321 -3.8034 3.6587 38 1 6.2339 -5.2896 4.9568 39 1 5.6766 -3.9211 5.9489 40 1 7.2036 -1.9932 6.3892 41 1 8.8490 -1.9883 5.7111 42 1 7.3467 -0.5021 4.4134 43 1 7.9047 -1.8706 3.4209 44 1 5.0412 -1.7693 -0.1060 45 1 3.4988 -2.6529 -0.0084 46 1 3.9903 0.0040 -1.4317 47 1 3.6518 -1.5688 -2.1993 48 1 1.2118 -2.0187 -5.2636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947749922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:08 Heat of formation + Delta-G solvation = -158.466335 kcal Electronic energy + Delta-G solvation = -29705.176990 eV Core-core repulsion = 25429.337167 eV Total energy + Delta-G solvation = -4275.839823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.94892 -47.95770 -41.33082 -39.69558 -37.97746 -36.15248 -34.25328 -33.34917 -32.34928 -31.94037 -30.79043 -28.06592 -26.56340 -24.78781 -24.22159 -24.08120 -22.40419 -21.55063 -21.20409 -20.60472 -18.58894 -18.37921 -18.00103 -17.86885 -17.46923 -17.20241 -16.76056 -16.36553 -16.04256 -15.41031 -15.36557 -15.15920 -15.03163 -14.86646 -14.61942 -14.40833 -14.33437 -14.25396 -14.00896 -13.86172 -13.50674 -13.39573 -13.16766 -12.91029 -12.77871 -12.72632 -12.61783 -12.60684 -12.25715 -12.19589 -11.99649 -11.88767 -11.73200 -11.70980 -11.51416 -11.32760 -11.11580 -10.82328 -10.63452 -10.00770 -8.90742 -8.13890 -5.45077 1.27560 1.38489 1.45697 1.65845 2.17951 2.41717 2.82625 3.05729 3.13310 3.27704 3.33809 3.42664 3.75025 3.79902 3.85411 3.93139 3.99902 4.08118 4.21675 4.23990 4.31134 4.33915 4.45416 4.56844 4.61122 4.63973 4.66941 4.74622 4.81323 4.83040 4.88985 4.93813 4.96931 5.00332 5.02426 5.06367 5.10042 5.15557 5.22688 5.29322 5.48729 5.55792 5.58667 5.92455 6.20871 6.63617 6.94038 7.32734 7.66067 8.06916 9.05503 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002720 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.275710 B =10290.328092 C =10701.688794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.162 3.838 3 H 0.033 0.967 4 C -0.120 4.120 5 C 0.159 3.841 6 H 0.064 0.936 7 N -0.708 5.708 8 C 0.513 3.487 9 O -0.586 6.586 10 C -0.100 4.100 11 C -0.110 4.110 12 C -0.148 4.148 13 C 0.272 3.728 14 F -0.212 7.212 15 F -0.219 7.219 16 C -0.149 4.149 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.126 3.874 20 N -0.615 5.615 21 C -0.231 4.231 22 H 0.075 0.925 23 C -0.033 4.033 24 N -0.957 5.957 25 Si 0.930 3.070 26 H -0.287 1.287 27 H -0.313 1.313 28 H -0.265 1.265 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.416 0.584 35 H 0.142 0.858 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.021 0.979 47 H 0.047 0.953 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.655 -2.049 27.283 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.050 0.950 4 C -0.159 4.159 5 C 0.054 3.946 6 H 0.082 0.918 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.466 6.466 10 C -0.121 4.121 11 C -0.147 4.147 12 C -0.186 4.186 13 C 0.237 3.763 14 F -0.193 7.193 15 F -0.200 7.200 16 C -0.187 4.187 17 C -0.137 4.137 18 C -0.169 4.169 19 C 0.000 4.000 20 N -0.340 5.340 21 C -0.361 4.361 22 H 0.093 0.907 23 C -0.227 4.227 24 N -0.604 5.604 25 Si 0.761 3.239 26 H -0.214 1.214 27 H -0.242 1.242 28 H -0.190 1.190 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.254 0.746 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.039 0.961 47 H 0.065 0.935 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.164 -1.579 26.718 28.290 hybrid contribution 0.923 -0.087 -1.364 1.650 sum 10.087 -1.666 25.354 27.337 Atomic orbital electron populations 1.21737 0.94027 1.01534 1.01371 1.20713 0.94659 0.93509 0.85408 0.94959 1.22188 0.92491 1.02404 0.98792 1.20640 0.94931 0.95459 0.83546 0.91751 1.46017 1.13644 1.48490 1.27817 1.21189 0.81391 0.80902 0.86471 1.90712 1.57408 1.39633 1.58846 1.21461 0.98366 0.95969 0.96305 1.21516 1.03973 0.91827 0.97421 1.22523 0.91512 1.03183 1.01376 1.21635 0.90007 0.93378 0.71308 1.92991 1.90441 1.84461 1.51408 1.92976 1.77945 1.93272 1.55839 1.22530 1.05328 0.89906 1.00955 1.21261 0.94253 1.01371 0.96780 1.22212 0.99519 0.99874 0.95341 1.21239 0.84867 0.96847 0.97039 1.44674 1.01832 1.66485 1.21028 1.18965 0.95229 1.35499 0.86383 0.90728 1.25801 1.00163 1.00336 0.96443 1.69921 1.43468 1.41921 1.05080 0.86154 0.81144 0.80518 0.76068 1.21445 1.24208 1.18967 0.93361 0.89823 0.94273 0.90715 0.88382 0.74642 0.84032 0.92700 0.87489 0.88707 0.85272 0.85605 0.89284 0.89882 0.93043 0.92918 0.91511 0.96111 0.93509 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.94 71.98 0.57 -3.63 16 2 C 0.16 5.68 3.50 44.97 0.16 5.84 16 3 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.12 -3.07 4.84 30.67 0.15 -2.93 16 5 C 0.16 4.48 2.42 45.02 0.11 4.59 16 6 H 0.06 2.10 7.58 -2.39 -0.02 2.09 16 7 N -0.71 -14.05 4.97 -442.41 -2.20 -16.25 16 8 C 0.51 11.36 7.12 87.66 0.62 11.98 16 9 O -0.59 -19.16 15.64 -3.04 -0.05 -19.21 16 10 C -0.10 -1.27 2.53 -11.54 -0.03 -1.30 16 11 C -0.11 -1.21 4.98 30.60 0.15 -1.06 16 12 C -0.15 -1.29 5.45 30.59 0.17 -1.13 16 13 C 0.27 3.90 2.10 30.59 0.06 3.96 16 14 F -0.21 -3.56 17.06 44.97 0.77 -2.80 16 15 F -0.22 -4.66 16.02 44.97 0.72 -3.94 16 16 C -0.15 -1.63 5.45 30.59 0.17 -1.46 16 17 C -0.10 -1.52 4.37 30.60 0.13 -1.38 16 18 C -0.13 -4.52 5.65 30.67 0.17 -4.34 16 19 C 0.13 5.51 4.19 86.36 0.36 5.87 16 20 N -0.61 -27.80 2.76 -675.23 -1.86 -29.67 16 21 C -0.23 -12.53 9.06 84.03 0.76 -11.77 16 22 H 0.08 4.27 6.37 -2.91 -0.02 4.25 16 23 C -0.03 -1.93 5.24 84.86 0.45 -1.48 16 24 N -0.96 -59.88 13.97 21.65 0.30 -59.58 16 25 Si 0.93 47.95 24.35 68.60 1.67 49.62 16 26 H -0.29 -14.45 6.72 99.48 0.67 -13.78 16 27 H -0.31 -16.42 7.11 99.48 0.71 -15.71 16 28 H -0.26 -13.25 6.44 99.48 0.64 -12.61 16 29 H 0.05 1.65 7.45 -2.39 -0.02 1.64 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.46 7.61 -2.38 -0.02 1.44 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 5.11 8.02 -92.71 -0.74 4.37 16 35 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.93 7.80 -2.39 -0.02 0.91 16 37 H 0.11 0.74 7.56 -2.39 -0.02 0.72 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 43 H 0.05 1.11 7.76 -2.39 -0.02 1.09 16 44 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.02 0.94 6.95 -2.38 -0.02 0.92 16 47 H 0.05 2.29 4.61 -2.38 -0.01 2.28 16 48 H 0.26 15.58 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -75.38 367.57 3.47 -71.91 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.11 Total: 8.16 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.01 Total: 1.74 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -3.76 Total: -105.49 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.49 Total: -6.73 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.67 Total: 49.62 kcal Total: -75.38 3.47 -71.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947749922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.554 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds