Wall clock time and date at job start Tue Mar 31 2020 17:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58746 * 2 1 4 4 C 1.53192 * 109.71674 * 120.36656 * 2 1 3 5 5 C 1.53031 * 109.31396 * 65.20080 * 4 2 1 6 6 H 1.09004 * 109.46392 * 301.37466 * 5 4 2 7 7 N 1.46501 * 109.46112 * 181.39838 * 5 4 2 8 8 C 1.34780 * 120.00029 * 154.96947 * 7 5 4 9 9 O 1.21288 * 119.99885 * 0.02562 * 8 7 5 10 10 C 1.50692 * 120.00247 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.47309 * 300.00521 * 10 8 7 12 12 C 1.53000 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47353 * 60.00296 * 12 11 10 14 14 F 1.39904 * 109.46956 * 59.99487 * 13 12 11 15 15 F 1.39901 * 109.47289 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.46863 * 299.99743 * 13 12 11 17 17 C 1.52994 * 109.47443 * 180.02562 * 10 8 7 18 18 C 1.53042 * 109.52813 * 61.38639 * 5 4 2 19 19 C 1.53194 * 109.31151 * 298.63153 * 18 5 4 20 20 N 1.46920 * 108.77804 * 54.63049 * 19 18 5 21 21 C 1.36939 * 120.63140 * 126.41018 * 20 19 18 22 22 H 1.07995 * 120.00730 * 207.67849 * 21 20 19 23 23 C 1.38814 * 119.99437 * 27.68140 * 21 20 19 24 24 N 1.31618 * 120.00491 * 17.35026 * 23 21 20 25 25 Si 1.86799 * 119.99718 * 197.35233 * 23 21 20 26 26 H 1.48498 * 109.47419 * 90.00214 * 25 23 21 27 27 H 1.48505 * 109.47529 * 209.99884 * 25 23 21 28 28 H 1.48501 * 109.47276 * 330.00085 * 25 23 21 29 29 H 1.08998 * 109.46998 * 180.27637 * 1 2 3 30 30 H 1.08995 * 109.47052 * 300.27941 * 1 2 3 31 31 H 1.09001 * 109.46869 * 60.28169 * 1 2 3 32 32 H 1.08998 * 109.48385 * 305.25358 * 4 2 1 33 33 H 1.09006 * 109.50585 * 185.16231 * 4 2 1 34 34 H 0.96991 * 120.00215 * 334.97930 * 7 5 4 35 35 H 1.09001 * 109.47027 * 60.00557 * 10 8 7 36 36 H 1.09000 * 109.46611 * 59.99912 * 11 10 8 37 37 H 1.08988 * 109.47156 * 299.99669 * 11 10 8 38 38 H 1.09004 * 109.47345 * 299.99573 * 12 11 10 39 39 H 1.09002 * 109.46750 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47056 * 180.02562 * 16 13 12 41 41 H 1.09001 * 109.47106 * 299.99671 * 16 13 12 42 42 H 1.09000 * 109.47328 * 60.00551 * 17 10 8 43 43 H 1.09002 * 109.47334 * 300.00339 * 17 10 8 44 44 H 1.09004 * 109.49654 * 58.57675 * 18 5 4 45 45 H 1.09001 * 109.49963 * 178.64578 * 18 5 4 46 46 H 1.09001 * 109.58223 * 174.42135 * 19 18 5 47 47 H 1.09004 * 109.58141 * 294.84127 * 19 18 5 48 48 H 0.97002 * 120.00369 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0468 -0.7290 1.2443 5 6 1.6473 -2.2044 1.1689 6 1 0.5624 -2.2838 1.0992 7 7 2.1111 -2.8977 2.3733 8 6 1.4860 -4.0169 2.7894 9 8 0.5398 -4.4503 2.1665 10 6 1.9626 -4.7298 4.0285 11 6 3.4163 -5.1674 3.8379 12 6 3.9003 -5.8907 5.0963 13 6 3.0259 -7.1211 5.3455 14 9 3.1128 -7.9850 4.2485 15 9 3.4689 -7.7828 6.4959 16 6 1.5722 -6.6835 5.5362 17 6 1.0884 -5.9606 4.2770 18 6 2.2857 -2.8448 -0.0658 19 6 1.7719 -2.1398 -1.3251 20 7 2.0225 -0.6979 -1.1954 21 6 2.7019 -0.0174 -2.1703 22 1 3.2656 0.8685 -1.9178 23 6 2.6659 -0.4662 -3.4834 24 7 1.7346 -1.3150 -3.8636 25 14 3.9395 0.1343 -4.7109 26 1 5.1122 -0.7766 -4.6933 27 1 3.3461 0.1508 -6.0721 28 1 4.3730 1.5063 -4.3432 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5181 0.8874 31 1 -0.3633 0.5095 -0.8925 32 1 1.6111 -0.2792 2.1364 33 1 3.1329 -0.6479 1.2888 34 1 2.8679 -2.5513 2.8713 35 1 1.8948 -4.0571 4.8835 36 1 4.0393 -4.2908 3.6607 37 1 3.4841 -5.8401 2.9830 38 1 3.8327 -5.2176 5.9510 39 1 4.9361 -6.2020 4.9606 40 1 0.9493 -7.5601 5.7143 41 1 1.5045 -6.0105 6.3909 42 1 1.1566 -6.6333 3.4220 43 1 0.0527 -5.6493 4.4127 44 1 3.3695 -2.7436 -0.0088 45 1 2.0205 -3.9013 -0.1058 46 1 2.2970 -2.5248 -2.1992 47 1 0.7016 -2.3166 -1.4318 48 1 1.7093 -1.6283 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947749924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:15 Heat of formation + Delta-G solvation = -161.946534 kcal Electronic energy + Delta-G solvation = -29723.803438 eV Core-core repulsion = 25447.812702 eV Total energy + Delta-G solvation = -4275.990735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.94178 -47.94787 -41.30369 -39.58050 -37.92501 -36.00733 -34.31616 -32.62468 -32.10608 -31.71513 -30.64185 -28.48245 -26.24625 -24.82320 -24.13411 -23.65919 -23.01813 -21.62516 -20.85433 -20.01071 -18.86593 -18.37012 -17.87028 -17.86000 -17.32777 -17.15884 -16.60954 -15.99298 -15.76139 -15.50594 -15.21870 -15.11432 -14.82646 -14.69852 -14.48556 -14.30435 -14.18599 -14.12043 -13.98051 -13.84429 -13.38757 -13.19401 -13.14205 -12.89422 -12.76638 -12.66430 -12.61032 -12.52960 -12.28221 -12.19027 -12.01950 -11.98277 -11.74765 -11.71538 -11.47054 -11.13660 -11.08229 -10.65618 -10.54992 -9.93859 -8.68380 -7.85133 -5.30121 1.47472 1.48931 1.57477 1.69133 2.23221 2.52238 2.83294 3.14132 3.29442 3.33589 3.43507 3.63250 3.76379 3.84601 3.87446 4.00991 4.08957 4.13065 4.31719 4.32361 4.35304 4.46589 4.53508 4.62093 4.68276 4.71974 4.78271 4.82529 4.85811 4.89550 4.91895 4.97889 5.02264 5.11541 5.16242 5.17723 5.18394 5.30297 5.35444 5.45555 5.52615 5.63973 5.69193 5.77063 6.41348 6.67584 7.16339 7.37250 7.88833 8.40679 9.21278 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.002609 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.962830 B =10730.180314 C =11236.884542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.061 0.939 7 N -0.709 5.709 8 C 0.511 3.489 9 O -0.588 6.588 10 C -0.100 4.100 11 C -0.109 4.109 12 C -0.148 4.148 13 C 0.273 3.727 14 F -0.219 7.219 15 F -0.211 7.211 16 C -0.149 4.149 17 C -0.099 4.099 18 C -0.131 4.131 19 C 0.185 3.815 20 N -0.599 5.599 21 C -0.256 4.256 22 H 0.073 0.927 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.265 1.265 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.039 0.961 46 H 0.050 0.950 47 H -0.012 1.012 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 -5.653 25.033 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.156 4.156 5 C 0.056 3.944 6 H 0.079 0.921 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.468 6.468 10 C -0.120 4.120 11 C -0.147 4.147 12 C -0.185 4.185 13 C 0.237 3.763 14 F -0.201 7.201 15 F -0.192 7.192 16 C -0.187 4.187 17 C -0.137 4.137 18 C -0.172 4.172 19 C 0.058 3.942 20 N -0.322 5.322 21 C -0.386 4.386 22 H 0.091 0.909 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.794 3.206 26 H -0.214 1.214 27 H -0.227 1.227 28 H -0.189 1.189 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.006 0.994 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.601 -6.026 24.440 25.428 hybrid contribution 0.478 -0.301 -1.530 1.631 sum 4.078 -6.326 22.910 24.115 Atomic orbital electron populations 1.22187 0.98328 1.00199 1.00537 1.20729 0.92101 0.95563 0.86395 0.91200 1.22114 1.01931 0.92798 0.98733 1.20676 0.98125 0.92141 0.83484 0.92128 1.46051 1.35192 1.26836 1.27917 1.21227 0.82046 0.80361 0.86535 1.90718 1.30545 1.66658 1.58918 1.21457 0.96443 0.97935 0.96212 1.21512 0.93833 1.01925 0.97437 1.22524 0.99889 0.94810 1.01300 1.21632 0.98046 0.85324 0.71309 1.92978 1.97484 1.73661 1.55935 1.92989 1.91322 1.83578 1.51359 1.22537 0.91886 1.03390 1.00858 1.21265 1.00070 0.95578 0.96786 1.22312 1.00316 0.98043 0.96495 1.20397 0.95260 0.83774 0.94736 1.44383 1.64257 1.03504 1.20034 1.19555 1.21784 1.09957 0.87343 0.90906 1.25810 0.99528 1.00820 0.98735 1.70211 1.33733 1.37593 1.16803 0.85294 0.78821 0.78527 0.77981 1.21434 1.22735 1.18912 0.94841 0.90571 0.95458 0.88825 0.90671 0.74761 0.84002 0.87475 0.92795 0.85210 0.88612 0.89269 0.85547 0.93139 0.89977 0.92093 0.94210 0.93110 0.99428 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 9.03 71.98 0.65 -5.04 16 2 C 0.16 6.02 3.28 44.97 0.15 6.17 16 3 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 4 C -0.12 -3.30 5.02 30.67 0.15 -3.15 16 5 C 0.16 5.08 2.21 45.02 0.10 5.18 16 6 H 0.06 2.28 5.94 -2.38 -0.01 2.26 16 7 N -0.71 -15.98 4.97 -442.41 -2.20 -18.18 16 8 C 0.51 12.67 7.12 87.65 0.62 13.30 16 9 O -0.59 -21.20 15.65 -3.05 -0.05 -21.25 16 10 C -0.10 -1.44 2.53 -11.54 -0.03 -1.47 16 11 C -0.11 -1.36 4.98 30.60 0.15 -1.21 16 12 C -0.15 -1.42 5.45 30.59 0.17 -1.25 16 13 C 0.27 4.15 2.10 30.59 0.06 4.22 16 14 F -0.22 -4.89 16.02 44.97 0.72 -4.17 16 15 F -0.21 -3.69 17.06 44.97 0.77 -2.92 16 16 C -0.15 -1.80 5.46 30.61 0.17 -1.63 16 17 C -0.10 -1.69 4.37 30.61 0.13 -1.56 16 18 C -0.13 -5.16 5.65 30.67 0.17 -4.99 16 19 C 0.18 9.20 4.90 86.36 0.42 9.62 16 20 N -0.60 -29.09 2.70 -675.24 -1.82 -30.91 16 21 C -0.26 -13.72 9.59 84.03 0.81 -12.92 16 22 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 23 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 24 N -0.94 -56.45 11.19 21.65 0.24 -56.20 16 25 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 29 H 0.03 1.33 5.74 -2.39 -0.01 1.32 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.42 5.97 8.02 -92.71 -0.74 5.22 16 35 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.87 7.56 -2.39 -0.02 0.85 16 37 H 0.05 1.00 7.80 -2.39 -0.02 0.98 16 38 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 1.19 7.76 -2.39 -0.02 1.17 16 43 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 2.89 6.04 -2.39 -0.01 2.88 16 47 H -0.01 -0.68 7.50 -2.38 -0.02 -0.70 16 48 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -74.28 373.25 4.05 -70.23 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.22 Total: 13.88 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.15 Total: 2.69 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.78 Total: -105.29 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.49 Total: -7.10 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.28 4.05 -70.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947749924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.721 kcal (2) G-P(sol) polarization free energy of solvation -74.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds